› › Structure analysis

Rat Kidney V1 complex with SidK and NCOA7B, State 1

Electron Microscopy
3.3Å resolution
PDB entry 7uzj coloured by chain, front view.
PDB entry 7uzj coloured by chain, side view.
PDB entry 7uzj coloured by chain, top view.
Source organisms:
Assembly composition:
hetero icosamer (preferred)
Entry contents: 10 distinct polypeptide molecules

Quick links

Assemblies

Assembly 1 (preferred)
Download    3D Visualisation
Multimeric state: hetero icosamer
Accessible surface area: 259188.09 Å2
Buried surface area: 87821.31 Å2
Dissociation area: 1,709.79 Å2
Dissociation energy (ΔGdiss): 4.71 kcal/mol
Dissociation entropy (TΔSdiss): 15.93 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-235502

Macromolecules

H(+)-transporting two-sector ATPase
Chains: A, B, C
Length: 617 amino acids
Theoretical weight: 68.34 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: D4A133 (Residues: 31-647; Coverage: 95%)
Gene name: Atp6v1a
Pfam:
H(+)-transporting two-sector ATPase in PDB entry 7uzj, assembly 1, front view.
H(+)-transporting two-sector ATPase in PDB entry 7uzj, assembly 1, side view.
H(+)-transporting two-sector ATPase in PDB entry 7uzj, assembly 1, top view.
Molecule details ›

Search similar proteins

V-type proton ATPase subunit B, brain isoform
Chains: D, E, F
Length: 511 amino acids
Theoretical weight: 56.61 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62815 (Residues: 1-511; Coverage: 100%)
Gene names: Atp6b2, Atp6v1b2, Vat2
Pfam:
V-type proton ATPase subunit B, brain isoform in PDB entry 7uzj, assembly 1, front view.
V-type proton ATPase subunit B, brain isoform in PDB entry 7uzj, assembly 1, side view.
V-type proton ATPase subunit B, brain isoform in PDB entry 7uzj, assembly 1, top view.
Molecule details ›

Search similar proteins

V-type proton ATPase subunit C 1
Chain: G
Length: 382 amino acids
Theoretical weight: 43.96 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: Q5FVI6 (Residues: 1-382; Coverage: 100%)
Gene name: Atp6v1c1
Pfam: V-ATPase subunit C
V-type proton ATPase subunit C 1 in PDB entry 7uzj, assembly 1, front view.
V-type proton ATPase subunit C 1 in PDB entry 7uzj, assembly 1, side view.
V-type proton ATPase subunit C 1 in PDB entry 7uzj, assembly 1, top view.
Molecule details ›

Search similar proteins

V-type proton ATPase subunit D
Chain: H
Length: 247 amino acids
Theoretical weight: 28.36 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: Q6P503 (Residues: 1-247; Coverage: 100%)
Gene name: Atp6v1d
Pfam: ATP synthase subunit D
V-type proton ATPase subunit D in PDB entry 7uzj, assembly 1, front view.
V-type proton ATPase subunit D in PDB entry 7uzj, assembly 1, side view.
V-type proton ATPase subunit D in PDB entry 7uzj, assembly 1, top view.
Molecule details ›

Search similar proteins

V-type proton ATPase subunit E 1
Chains: I, J, K
Length: 226 amino acids
Theoretical weight: 26.17 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: Q6PCU2 (Residues: 1-226; Coverage: 100%)
Gene name: Atp6v1e1
Pfam: ATP synthase (E/31 kDa) subunit
V-type proton ATPase subunit E 1 in PDB entry 7uzj, assembly 1, front view.
V-type proton ATPase subunit E 1 in PDB entry 7uzj, assembly 1, side view.
V-type proton ATPase subunit E 1 in PDB entry 7uzj, assembly 1, top view.
Molecule details ›

Search similar proteins

V-type proton ATPase subunit F
Chain: L
Length: 119 amino acids
Theoretical weight: 13.39 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P50408 (Residues: 1-119; Coverage: 100%)
Gene names: Atp6s14, Atp6v1f, Vatf
Pfam: ATP synthase (F/14-kDa) subunit
V-type proton ATPase subunit F in PDB entry 7uzj, assembly 1, front view.
V-type proton ATPase subunit F in PDB entry 7uzj, assembly 1, side view.
V-type proton ATPase subunit F in PDB entry 7uzj, assembly 1, top view.
Molecule details ›

Search similar proteins

V-type proton ATPase subunit G
Chains: M, N, O
Length: 118 amino acids
Theoretical weight: 13.73 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: B2GUV5 (Residues: 1-118; Coverage: 100%)
Gene names: Atp6v1g1, rCG_55259
Pfam: Vacuolar (H+)-ATPase G subunit
V-type proton ATPase subunit G in PDB entry 7uzj, assembly 1, front view.
V-type proton ATPase subunit G in PDB entry 7uzj, assembly 1, side view.
V-type proton ATPase subunit G in PDB entry 7uzj, assembly 1, top view.
Molecule details ›

Search similar proteins

V-type proton ATPase subunit H
Chain: P
Length: 483 amino acids
Theoretical weight: 55.94 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A0G2K9J2 (Residues: 1-428; Coverage: 98%)
Gene name: Atp6v1h
Pfam:
V-type proton ATPase subunit H in PDB entry 7uzj, assembly 1, front view.
V-type proton ATPase subunit H in PDB entry 7uzj, assembly 1, side view.
V-type proton ATPase subunit H in PDB entry 7uzj, assembly 1, top view.
Molecule details ›

Search similar proteins

Type IV secretion protein Dot
Chains: Q, R, S
Length: 280 amino acids
Theoretical weight: 32.15 KDa
Source organism: Legionella pneumophila
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5ZWW6 (Residues: 1-280; Coverage: 49%)
Gene name: lpg0968
Type IV secretion protein Dot in PDB entry 7uzj, assembly 1, front view.
Type IV secretion protein Dot in PDB entry 7uzj, assembly 1, side view.
Type IV secretion protein Dot in PDB entry 7uzj, assembly 1, top view.
Molecule details ›

Search similar proteins

Nuclear receptor coactivator 7B
Chain: T
Length: 221 amino acids
Theoretical weight: 25.6 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
Nuclear receptor coactivator 7B in PDB entry 7uzj, assembly 1, front view.
Nuclear receptor coactivator 7B in PDB entry 7uzj, assembly 1, side view.
Nuclear receptor coactivator 7B in PDB entry 7uzj, assembly 1, top view.
Molecule details ›

Search similar proteins

Quick links