Structure analysis

Complex structure of Neuropeptide Y Y2 receptor in complex with NPY and Gi

Electron Microscopy
3.11Å resolution
Source organisms:
Assembly composition:
hetero hexamer (preferred)
Entry contents: 6 distinct polypeptide molecules

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero hexamer
Accessible surface area: 54349.8 Å2
Buried surface area: 13119.98 Å2
Dissociation area: 879.99 Å2
Dissociation energy (ΔGdiss): -5.04 kcal/mol
Dissociation entropy (TΔSdiss): 13.63 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-224952

Macromolecules

Chain: A
Length: 354 amino acids
Theoretical weight: 40.42 KDa
Source organism: Homo sapiens
Expression system: Trichoplusia ni
UniProt:
  • Canonical: P63096 (Residues: 1-354; Coverage: 100%)
Pfam: G-protein alpha subunit
InterPro:
PDBe-KB: UniProt Coverage View: P63096  
135450100150200250300350
 
100200300
UniProt
P63096
Chains
Domains
Interaction interfaces

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Chain: B
Length: 345 amino acids
Theoretical weight: 37.73 KDa
Source organism: Homo sapiens
Expression system: Trichoplusia ni
UniProt:
  • Canonical: P62873 (Residues: 2-340; Coverage: 100%)
Pfam: WD domain, G-beta repeat
InterPro:
PDBe-KB: UniProt Coverage View: P62873  
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Chain: G
Length: 71 amino acids
Theoretical weight: 7.86 KDa
Source organism: Homo sapiens
Expression system: Trichoplusia ni
UniProt:
  • Canonical: P59768 (Residues: 1-71; Coverage: 100%)
Pfam: GGL domain
InterPro:
PDBe-KB: UniProt Coverage View: P59768  
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Chain: L
Length: 36 amino acids
Theoretical weight: 4.28 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P01303 (Residues: 29-64; Coverage: 52%)
Pfam: Pancreatic hormone peptide
InterPro:
PDBe-KB: UniProt Coverage View: P01303  
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Chain: R
Length: 391 amino acids
Theoretical weight: 43.78 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P49146 (Residues: 2-381; Coverage: 100%)
Pfam: 7 transmembrane receptor (rhodopsin family)
InterPro:
PDBe-KB: UniProt Coverage View: P49146  
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Chain: S
Length: 259 amino acids
Theoretical weight: 27.78 KDa
Source organism: Mus musculus
Expression system: Trichoplusia ni
InterPro:
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