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rat HEV P domain in complex with glycan-sensitive nAb p60.12

X-ray diffraction
3.922Å resolution
PDB entry 8pmx coloured by chain, front view.
PDB entry 8pmx coloured by chain, side view.
PDB entry 8pmx coloured by chain, top view.
Source organisms:
Assembly composition:
hetero tetramer (preferred)
Entry contents: 3 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Pro-secreted protein ORF2 and IG-heavy chain and IG-light lambda chain
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Multimeric state: hetero tetramer
Accessible surface area: 32990.24 Å2
Buried surface area: 8166.86 Å2
Dissociation area: 1,008.99 Å2
Dissociation energy (ΔGdiss): -3.03 kcal/mol
Dissociation entropy (TΔSdiss): 13.06 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-246867

Macromolecules

Pro-secreted protein ORF2
Chains: A, B
Length: 165 amino acids
Theoretical weight: 17.98 KDa
Source organism: Hepatitis E virus rat/R63/DEU/2009
Expression system: Drosophila melanogaster
UniProt:
  • Canonical: E0XL23 (Residues: 445-603; Coverage: 25%)
Pfam: Structural protein 2 C-terminal domain
Pro-secreted protein ORF2 in PDB entry 8pmx, assembly 1, front view.
Pro-secreted protein ORF2 in PDB entry 8pmx, assembly 1, side view.
Pro-secreted protein ORF2 in PDB entry 8pmx, assembly 1, top view.
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Fab p60.12-HC
Chain: H
Length: 233 amino acids
Theoretical weight: 24.86 KDa
Source organism: Homo sapiens
Expression system: Drosophila melanogaster
Fab p60.12-HC in PDB entry 8pmx, assembly 1, front view.
Fab p60.12-HC in PDB entry 8pmx, assembly 1, side view.
Fab p60.12-HC in PDB entry 8pmx, assembly 1, top view.
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Fab p60.12-LC
Chain: L
Length: 217 amino acids
Theoretical weight: 22.9 KDa
Source organism: Homo sapiens
Expression system: Drosophila melanogaster
Fab p60.12-LC in PDB entry 8pmx, assembly 1, front view.
Fab p60.12-LC in PDB entry 8pmx, assembly 1, side view.
Fab p60.12-LC in PDB entry 8pmx, assembly 1, top view.
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