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Parasitella parasitica Fanzor (PpFz) State 1

Electron Microscopy
3.47Å resolution
PDB entry 9cf0 coloured by chain, front view.
PDB entry 9cf0 coloured by chain, side view.
PDB entry 9cf0 coloured by chain, top view.
Source organisms:
Assembly composition:
hetero pentamer (preferred)
Entry contents: 2 distinct polypeptide molecules
2 distinct DNA molecules
1 distinct RNA molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Peptidyl-prolyl cis-trans isomerase and Maltose/maltodextrin-binding periplasmic protein and RNA and DNA
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Multimeric state: hetero pentamer
Accessible surface area: 53023.95 Å2
Buried surface area: 14026.67 Å2
Dissociation area: 2,370.39 Å2
Dissociation energy (ΔGdiss): 4.33 kcal/mol
Dissociation entropy (TΔSdiss): 24.11 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-251586

Macromolecules

Peptidyl-prolyl cis-trans isomerase
Chain: C
Length: 162 amino acids
Theoretical weight: 17.41 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Saccharomyces cerevisiae
UniProt:
  • Canonical: P14832 (Residues: 1-162; Coverage: 100%)
Gene names: CPH1, CPR1, CYP1, SCC1, YD8358.10C, YDR155C
Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Peptidyl-prolyl cis-trans isomerase in PDB entry 9cf0, assembly 1, front view.
Peptidyl-prolyl cis-trans isomerase in PDB entry 9cf0, assembly 1, side view.
Peptidyl-prolyl cis-trans isomerase in PDB entry 9cf0, assembly 1, top view.
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Maltose/maltodextrin-binding periplasmic protein
Chain: P
Length: 1259 amino acids
Theoretical weight: 144.41 KDa
Source organisms: Expression system: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0AEX9 (Residues: 27-392; Coverage: 99%)
  • Canonical: A0A0B7NJM7 (Residues: 2-849; Coverage: 100%)
    • nullnull
Gene names: JW3994, PARPA_09356.1 scaffold 36248, b4034, malE
Pfam: Bacterial extracellular solute-binding protein
Maltose/maltodextrin-binding periplasmic protein in PDB entry 9cf0, assembly 1, front view.
Maltose/maltodextrin-binding periplasmic protein in PDB entry 9cf0, assembly 1, side view.
Maltose/maltodextrin-binding periplasmic protein in PDB entry 9cf0, assembly 1, top view.
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DNA chain N
Name: DNA non-target strand
Representative chains: N
Length: 57 nucleotides
Theoretical weight: 17.45 KDa
DNA non-target strand in PDB entry 9cf0, assembly 1, front view.
DNA non-target strand in PDB entry 9cf0, assembly 1, side view.
DNA non-target strand in PDB entry 9cf0, assembly 1, top view.
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DNA chain T
Name: DNA target strand
Representative chains: T
Length: 57 nucleotides
Theoretical weight: 17.68 KDa
DNA target strand in PDB entry 9cf0, assembly 1, front view.
DNA target strand in PDB entry 9cf0, assembly 1, side view.
DNA target strand in PDB entry 9cf0, assembly 1, top view.
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RNA chain W
Name: Parasitella parasitica Fanzor 1 omegaRNA
Representative chains: W
Length: 61 nucleotides
Theoretical weight: 19.51 KDa
Parasitella parasitica Fanzor 1 omegaRNA in PDB entry 9cf0, assembly 1, front view.
Parasitella parasitica Fanzor 1 omegaRNA in PDB entry 9cf0, assembly 1, side view.
Parasitella parasitica Fanzor 1 omegaRNA in PDB entry 9cf0, assembly 1, top view.
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