Cryo-EM structure of the Nup98(298-327) fibril
Resolution: 2.67 Å
EM Method: Helical reconstruction
Fitted PDBs: 8ci8
Q-score: 0.609
Ibanez de Opakua A, Pantoja CF, Cima-Omori MS, Dienemann C, Zweckstetter M
Nat Commun (2024) 15 pp. 3797-3797 [ DOI: doi:10.1038/s41467-024-48194-4 Pubmed: 38714656 ]
- Nuclear pore complex protein nup98 (3 kDa, Protein from Homo sapiens)
- Nup98(298-327) (Complex from Homo sapiens)
The cryo-EM map of the core region from the X. laevis NPC CR subunit
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7fik
Q-score: 0.346
Zhu X, Huang G, Zeng C, Zhan X, Liang K, Xu Q, Zhao Y, Wang P, Wang Q, Zhou Q, Tao Q, Liu M, Lei J, Yan C, Shi Y
Science (2022) 376 pp. eabl8280-eabl8280 [ Pubmed: 35679404 DOI: doi:10.1126/science.abl8280 ]
- Nucleoporin seh1-b (39 kDa, Protein from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Xenopus laevis)
- Outer nup160 (162 kDa, Protein from Xenopus laevis)
- Mgc154553 protein (41 kDa, Protein from Xenopus laevis)
- Outer nup133 (127 kDa, Protein from Xenopus laevis)
- Mgc83926 protein (36 kDa, Protein from Xenopus laevis)
- Nup155-prov protein (154 kDa, Protein from Xenopus laevis)
- Xenopus laevis nuclear pore complex (npc) (Complex from Xenopus laevis)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Xenopus laevis)
- Nucleoporin nup88a (82 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup133 (111 kDa, Protein from Xenopus laevis)
- Nup98 (13 kDa, Protein from Xenopus laevis)
- Nup358 complex, clamps (322 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup98-nup96 (191 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein (105 kDa, Protein from Xenopus laevis)
- Protein sec13 homolog (35 kDa, Protein from Xenopus laevis)
Cryo-em structure of the Nup98 fibril polymorph 1
Resolution: 2.76 Å
EM Method: Helical reconstruction
Fitted PDBs: 7q64
Q-score: 0.535
Ibanez de Opakua A, Geraets JA, Frieg B, Dienemann C, Savastano A, Rankovic M, Cima-Omori MS, Schroder GF, Zweckstetter M
Nat Chem (2022) 14 pp. 1278-1285 [ DOI: doi:10.1038/s41557-022-01035-7 Pubmed: 36138110 ]
Cryo-em structure of the Nup98 fibril polymorph 2
Resolution: 3.32 Å
EM Method: Helical reconstruction
Fitted PDBs: 7q65
Q-score: 0.567
Ibanez de Opakua A, Geraets JA, Frieg B, Dienemann C, Savastano A, Rankovic M, Cima-Omori MS, Schroder GF, Zweckstetter M
Nat Chem (2022) 14 pp. 1278-1285 [ Pubmed: 36138110 DOI: doi:10.1038/s41557-022-01035-7 ]
Cryo-em structure of the Nup98 fibril polymorph 3
Resolution: 2.79 Å
EM Method: Helical reconstruction
Fitted PDBs: 7q66
Q-score: 0.607
Ibanez de Opakua A, Geraets JA, Frieg B, Dienemann C, Savastano A, Rankovic M, Cima-Omori MS, Schroder GF, Zweckstetter M
Nat Chem (2022) 14 pp. 1278-1285 [ DOI: doi:10.1038/s41557-022-01035-7 Pubmed: 36138110 ]
Cryo-em structure of the Nup98 fibril polymorph 4
Resolution: 3.37 Å
EM Method: Helical reconstruction
Fitted PDBs: 7q67
Q-score: 0.457
Ibanez de Opakua A, Geraets JA, Frieg B, Dienemann C, Savastano A, Rankovic M, Cima-Omori MS, Schroder GF, Zweckstetter M
Nat Chem (2022) 14 pp. 1278-1285 [ DOI: doi:10.1038/s41557-022-01035-7 Pubmed: 36138110 ]
Human nuclear pore complex (dilated)
Mosalaganti S, Obarska-Kosinska A, Siggel M, Taniguchi R, Turonova B, Zimmerli CE, Buczak K, Schmidt FH, Margiotta E, Mackmull MT, Hagen WJH, Hummer G, Kosinski J, Beck M
Science (2022) 376 pp. eabm9506-eabm9506 [ Pubmed: 35679397 DOI: doi:10.1126/science.abm9506 ]
- Aladin (59 kDa, Protein from human)
- Nucleoporin p58/p45 (60 kDa, Protein from human)
- Nuclear pore complex protein nup133 (129 kDa, Protein from human)
- Nucleoporin nup188 homolog (196 kDa, Protein from human)
- Protein sec13 homolog (35 kDa, Protein from human)
- Nucleoporin nup43 (42 kDa, Protein from human)
- Nuclear pore complex protein nup160 (162 kDa, Protein from human)
- Human nuclear pore complex from hek cells (Cellular component from Homo sapiens)
- Nucleoporin nup37 (36 kDa, Protein from human)
- Nucleoporin nup35 (34 kDa, Protein from human)
- Nuclear pore complex protein nup205 (228 kDa, Protein from human)
- Nuclear pore complex protein nup98 (91 kDa, Protein from human)
- E3 sumo-protein ligase ranbp2 (358 kDa, Protein from human)
- Nuclear pore complex protein nup93 (93 kDa, Protein from human)
- Protein elys (252 kDa, Protein from human)
- Nuclear pore membrane glycoprotein 210 (205 kDa, Protein from human)
- Nucleoporin ndc1 (76 kDa, Protein from human)
- Nuclear pore complex protein nup155 (155 kDa, Protein from human)
- Nuclear pore complex protein nup214 (213 kDa, Protein from human)
- Nuclear pore complex protein nup96 (106 kDa, Protein from human)
- Nucleoporin seh1 (39 kDa, Protein from human)
- Nuclear pore complex protein nup107 (106 kDa, Protein from human)
- Nuclear pore complex protein nup88 (83 kDa, Protein from human)
- Nuclear pore complex protein nup85 (75 kDa, Protein from human)
- Nucleoporin p54 (55 kDa, Protein from human)
- Nuclear pore glycoprotein p62 (53 kDa, Protein from human)
Human nuclear pore complex (constricted)
Resolution: 12.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7r5k
Q-score: 0.034
Mosalaganti S, Obarska-Kosinska A, Siggel M, Taniguchi R, Turonova B, Zimmerli CE, Buczak K, Schmidt FH, Margiotta E, Mackmull MT, Hagen WJH, Hummer G, Kosinski J, Beck M
Science (2022) 376 pp. eabm9506-eabm9506 [ Pubmed: 35679397 DOI: doi:10.1126/science.abm9506 ]
- Aladin (59 kDa, Protein from human)
- Nuclear pore complex (120 MDa, Cellular component from Homo sapiens)
- Nucleoporin p58/p45 (60 kDa, Protein from human)
- Nuclear pore complex protein nup133 (129 kDa, Protein from human)
- Nucleoporin nup188 homolog (196 kDa, Protein from human)
- Protein sec13 homolog (35 kDa, Protein from human)
- Nucleoporin nup43 (42 kDa, Protein from human)
- Nuclear pore complex protein nup160 (162 kDa, Protein from human)
- Nucleoporin nup37 (36 kDa, Protein from human)
- Nucleoporin nup35 (34 kDa, Protein from human)
- Nuclear pore complex protein nup205 (228 kDa, Protein from human)
- Nuclear pore complex protein nup98 (91 kDa, Protein from human)
- E3 sumo-protein ligase ranbp2 (358 kDa, Protein from human)
- Nuclear pore complex protein nup93 (93 kDa, Protein from human)
- Protein elys (252 kDa, Protein from human)
- Nuclear pore membrane glycoprotein 210 (205 kDa, Protein from human)
- Nucleoporin ndc1 (76 kDa, Protein from human)
- Nuclear pore complex protein nup155 (155 kDa, Protein from human)
- Nuclear pore complex protein nup214 (213 kDa, Protein from human)
- Nuclear pore complex protein nup96 (106 kDa, Protein from human)
- Nucleoporin seh1 (39 kDa, Protein from human)
- Nuclear pore complex protein nup107 (106 kDa, Protein from human)
- Nuclear pore complex protein nup88 (83 kDa, Protein from human)
- Nuclear pore complex protein nup85 (75 kDa, Protein from human)
- Nucleoporin p54 (55 kDa, Protein from human)
- Nuclear pore glycoprotein p62 (53 kDa, Protein from human)