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Photobacterium profundum

Taxonomy
Taxonomy database identifier: 74109
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Vibrionales
Family Vibrionaceae
Genus Photobacterium
Species profundum
Peptidase View peptidase sequences from Photobacterium profundum
Count of known and putative peptidases: 123, non-peptidase homologues 46
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1378282
A- A39 unassigned family A39 unassigned peptidases MER1368219
AC A8 A08.001 signal peptidase II MER0041334 lspA P3TCK_13883
AD A24 A24.001 type 4 prepilin peptidase 1 MER0041335 PSPTO092 PBPRA3203
AD A24 unassigned subfamily A24A unassigned peptidases MER0643094 RB13062
AD A24 unassigned subfamily A24A unassigned peptidases MER0427062
AE A31 A31.003 HycI peptidase MER0062818 P3TCK_26877
CA C39 C39.005 colicin V processing peptidase MER0041340 PD0499 PBPRA0247
CA C39 unassigned family C39 unassigned peptidases MER0446018 RS04457 PBPRB0438
CA C93 unassigned family C93 unassigned peptidases MER0395044
CD C25 non-peptidase homologue family C25 non-peptidase homologues MER0185443 PBPRB1950
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0243978 CBU1157 PBPRB0511
CL C82 C82.A03 YnhG protein (Escherichia coli) MER0461832 Z1752 PBPRB0743
CO C40 C40.004 spr peptidase MER0172495
CO C40 unassigned family C40 unassigned peptidases MER0723711 P3TCK_05907
CO C40 unassigned family C40 unassigned peptidases MER0041341 LYTE PBPRA1436
G- G5 unassigned family G5 unassigned peptidases MER0910679 ECS1085/P3TCK_09008
MA M3 M03.004 oligopeptidase A MER0041988 PRLC PBPRA3544
MA M3 unassigned family M3 unassigned peptidases MER0199162 CV0315 PBPRB0702
MA M32 unassigned family M32 unassigned peptidases MER0042274 YPO2310 PBPRA1843
MA M41 M41.001 FtsH peptidase MER0042313 ftsH P3TCK_13943
MA M48 M48.002 HtpX peptidase MER0042353 PLU2681 PBPRA2322
MA M48 M48.023 BepA (Escherichia coli) MER0042407 C3011 PBPRA2902
MA M48 unassigned subfamily M48C unassigned peptidases MER0889684 XCC0006
MA M48 unassigned family M48 unassigned peptidases MER0062248 P3TCK_01554
MA M66 M66.001 StcE peptidase MER0042496 PBPRA2288
MA M78 unassigned family M78 unassigned peptidases MER0909017 LP_2003
MC M14 non-peptidase homologue subfamily M14D non-peptidase homologues MER0309072 RSC2008 PBPRB1073
MC M14 unassigned subfamily M14A unassigned peptidases MER0107593 PBPRB0708
MD M15 non-peptidase homologue family M15 non-peptidase homologues MER0042065 Y2762 PBPRA2350
MD M15 unassigned subfamily M15B unassigned peptidases MER0042076 Y1426 PBPRA0843
MD M74 unassigned family M74 unassigned peptidases MER1262503
MD M74 unassigned family M74 unassigned peptidases MER0042502 T0481 PBPRA0715
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0163078 PBPRB1337
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0923329 P3TCK_10403
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0061714 SO3560 PBPRA3048
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0163077 PBPRB1337
ME M16 unassigned subfamily M16A unassigned peptidases MER0041345 P3TCK_15584
ME M16 unassigned subfamily M16B unassigned peptidases MER0041346 SO3560 PBPRA3048
ME M16 unassigned subfamily M16B unassigned peptidases MER0063205 PBPRB0732
ME M16 unassigned subfamily M16B unassigned peptidases MER0048274 P3TCK_10408
MF M17 M17.003 PepA aminopeptidase MER0041347 pepA PBPRA0484
MF M17 M17.004 PepB aminopeptidase MER0041349 SF2570 PBPRA0757
MF M17 M17.004 PepB aminopeptidase MER0041348 P3TCK_14585
MG M24 non-peptidase homologue subfamily M24B non-peptidase homologues MER0081062 P3TCK_03061
MG M24 unassigned subfamily M24A unassigned peptidases MER0042243 PLU0671 PBPRA2969
MG M24 unassigned subfamily M24B unassigned peptidases MER0081067 P3TCK_09233
MG M24 unassigned subfamily M24B unassigned peptidases MER0041360 P3TCK_22725
MH M18 unassigned family M18 unassigned peptidases MER0084653 TTE1680 PBPRB1552
MH M20 M20.003 peptidase T MER0041350 pepT PBPRA1848
MH M20 M20.007 Xaa-His dipeptidase MER0015325 SF0285 PBPRA0833
MH M20 M20.A08 YgeY protein (Escherichia coli) MER0041353 PBPRA1992
MH M20 unassigned subfamily M20A unassigned peptidases MER0041351 dapE PBPRA0844
MH M20 unassigned subfamily M20A unassigned peptidases MER0041352 PSPTO257 PBPRA2427
MH M20 unassigned subfamily M20A unassigned peptidases MER0041355 SPYM3_11 PBPRA2746
MH M20 unassigned subfamily M20A unassigned peptidases MER0041354 DR2493 PBPRA2583
MH M20 unassigned subfamily M20B unassigned peptidases MER0048273 P3TCK_08061
MH M20 unassigned subfamily M20B unassigned peptidases MER0084652 P3TCK_02686
MH M20 unassigned family M20D unassigned peptidases MER0093731 P3TCK_02911
MH M20 unassigned family M20D unassigned peptidases MER0093728 ATU3303 PBPRB0403
MH M20 unassigned family M20D unassigned peptidases MER0041357 Z2425 PBPRA1556
MH M20 unassigned family M20D unassigned peptidases MER0093730 P3TCK_03041
MH M20 unassigned family M20D unassigned peptidases MER0041356 PBPRA2474
MH M20 unassigned family M20D unassigned peptidases MER0373776
MH M20 unassigned family M20 unassigned peptidases MER0084647 PBPRB0711
MH M28 unassigned subfamily M28C unassigned peptidases MER0080177 P3TCK_15714
MJ M19 non-peptidase homologue family M19 non-peptidase homologues MER0084649 P3TCK_22335
MJ M38 M38.001 isoaspartyl dipeptidase (metallo-type) MER0042276 SF4190 PBPRA1536
MJ M38 M38.982 urease MER0871997 ureC
MJ M38 M38.A02 PyrC protein (Escherichia coli) MER0042697 pyrC PBPRA2405
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0107998 NAGA PBPRB0147
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0871344 P3TCK_08191
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0859919 P3TCK_09528
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0874313 P3TCK_03661
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0872424 SPYM3_14
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0872985 SSNA
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0863572 PBPRB0063
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0042695 T2192 PBPRA1030
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0042746 SO0990 PBPRA1472
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0042289 DHT PBPRA1991
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0042696 hutI PBPRA2170
MJ M38 unassigned family M38 unassigned peptidases MER0108009 P3TCK_21200
MJ M38 unassigned family M38 unassigned peptidases MER0108010 P3TCK_04661
MJ M38 unassigned family M38 unassigned peptidases MER0042745 RSP1187 PBPRA1272
MJ M38 unassigned family M38 unassigned peptidases MER0042709 SMB21293 PBPRA1930
MJ M38 unassigned family M38 unassigned peptidases MER0042747 ECS3752 PBPRA1942
MJ M38 unassigned family M38 unassigned peptidases MER0042748 GUAD PBPRA2246
MM M50 unassigned subfamily M50B unassigned peptidases MER0042468 VV20250 PBPRA2032
MM M50 unassigned subfamily M50B unassigned peptidases MER0042426 P3TCK_25465
MO M23 M23.009 Mername-AA292 peptidase MER0042193 CJ1087C PBPRA0654
MO M23 M23.011 YebA peptidase MER0042191 PA0667 PBPRA0532
MO M23 M23.011 YebA peptidase MER0042194 ECS2566 PBPRA1057
MO M23 M23.014 ShyA D,D-endopeptidase (Vibrio cholerae) MER0042195 YPO2062 PBPRA2365
MO M23 M23.950 YibP g.p. (Escherichia sp.) MER0042647 P3TCK_22155
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0042119 ECS3596 PBPRA3072
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0480144
MO M23 unassigned subfamily M23B unassigned peptidases MER0042192 HP1543 PBPRA0638
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0041399 STY3548 PBPRA3263
MU M103 M103.UNW family M103 non-peptidase homologues MER0119913 VVA0969 PBPRB1171
MU M103 M103.UNW family M103 non-peptidase homologues MER0041398 PLU4060 PBPRA3261
MU M103 M103.UPW family M103 unassigned peptidases MER0122584 PRO0995 PBPRB1170
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0405340 VP2236 PBPRA0013
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0327378
PA S1 S01.275 DegS peptidase MER0041362 P3TCK_24215
PA S1 S01.B70 try-3 g.p. (Caenorhabditis elegans) MER0090532 PBPRB0875
PA S1 non-peptidase homologue subfamily S1B non-peptidase homologues MER0217359
PA S1 unassigned subfamily S1A unassigned peptidases MER0041363 P3TCK_14494
PA S1 unassigned subfamily S1A unassigned peptidases MER0062289 VV10447 PBPRB1376
PA S1 unassigned subfamily S1A unassigned peptidases MER0216806 PBPRB1619
PA S1 unassigned subfamily S1A unassigned peptidases MER0062339 P3TCK_10553
PA S1 unassigned subfamily S1C unassigned peptidases MER0902704 P3TCK_24225
PA S1 unassigned subfamily S1C unassigned peptidases MER0061715 Y0137 P3TCK_24225
PA S1 unassigned subfamily S1C unassigned peptidases MER0217776 PBPRA0472
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0041929 YPO2772 PBPRA2648
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0458607 BH1728 PBPRA0542
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0041928 Y1198 PBPRA1027
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0041931 glmS PBPRA3599
PB C44 unassigned family C44 unassigned peptidases MER0041930 YPO3242 PBPRA2912
PB C59 unassigned family C59 unassigned peptidases MER0122927 P3TCK_18147
PB C69 C69.001 dipeptidase A MER0038283 LP_1711 PBPRA1233
PB T1 T01.006 HslV component of HslUV peptidase MER0042520 hslV PBPRA0254
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0041393 RSC2921 PBPRA3512
PC C26 C26.954 carA protein MER0041336 carA PBPRA0596
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0041338 PLU0393 PBPRA0288
PC C26 C26.960 TrpD protein (anthranilate synthase component II) MER0041337 S1352 PBPRA2487
PC C26 C26.964 CTP synthetase MER0448693
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0444608 hisH PBPRA1088
PC C26 C26.A07 At1g63660 (Arabidopsis thaliana) MER0041339 guaA PBPRA0781
PC C26 unassigned family C26 unassigned peptidases MER0446935 CC0409 PBPRB0859
PC C26 unassigned family C26 unassigned peptidases MER0446286
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0062247 P3TCK_18479
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0050425 CAC3350 PBPRB0494
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0041342 STY0472 PBPRA0811
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0041343 XCC3360 PBPRA2760
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0167812 STY2140 PBPRB0160
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0186148 CAC3350 PBPRB0494
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0171146 VCA0455 PBPRB1243
PC S51 unassigned family S51 unassigned peptidases MER0041390 P3TCK_27519
SB S8 S08.134 Apa1 peptidase (Pseudoalteromonas sp. strain AS-11) MER0016635 APRE PBPRA1453
SB S8 unassigned subfamily S8A unassigned peptidases MER0050428 BPRB PBPRB1588
SC S9 S09.010 oligopeptidase B MER0050426 VVA0361 PBPRB0979
SC S9 non-peptidase homologue subfamily S9C non-peptidase homologues MER0041365 SSO2521 PBPRA2526
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0209966
SC S9 unassigned subfamily S9B unassigned peptidases MER0996494 P3TCK_14675
SC S9 unassigned subfamily S9B unassigned peptidases MER0996565 ECS3046/P3TCK_05361
SC S9 unassigned subfamily S9C unassigned peptidases MER0017253 PBPRA1449
SC S9 unassigned family S9 unassigned peptidases MER0210608 RB1395 PBPRA2989
SC S9 unassigned family S9 unassigned peptidases MER0214393 CV0172 PBPRB0075
SC S33 S33.010 SCO7095-type peptidase MER0041382 T3336 PBPRA0137
SC S33 S33.010 SCO7095-type peptidase MER0041384 ORFC374- PBPRA1642
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0039343 PD0836 PBPRA1463
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0214062
SC S33 unassigned family S33 unassigned peptidases MER0144039 P3TCK_14454
SC S33 unassigned family S33 unassigned peptidases MER0041381 bioH PBPRA0179
SC S33 unassigned family S33 unassigned peptidases MER0041379 STY0734 PBPRA1038
SC S33 unassigned family S33 unassigned peptidases MER0041383 SO2582 PBPRA1074
SC S33 unassigned family S33 unassigned peptidases MER0041378 SCO0805 PBPRA1517
SC S33 unassigned family S33 unassigned peptidases MER0041380 STM2308 PBPRA2623
SC S33 unassigned family S33 unassigned peptidases MER0214556 P3TCK_10398
SE S11 S11.002 murein-DD-endopeptidase MER0041366 YPO1176 PBPRA1875
SE S11 unassigned family S11 unassigned peptidases MER0084650 P3TCK_08156
SE S11 unassigned family S11 unassigned peptidases MER0084651 P3TCK_12711
SE S11 unassigned family S11 unassigned peptidases MER0041367 P3TCK_19730
SE S11 unassigned family S11 unassigned peptidases MER0041368 P3TCK_25790
SE S12 unassigned family S12 unassigned peptidases MER1006337 P3TCK_18965
SE S12 unassigned family S12 unassigned peptidases MER0162968 PBPRB0809
SE S12 unassigned family S12 unassigned peptidases MER0421706 PBPRB1966
SE S13 S13.001 D-Ala-D-Ala peptidase C MER0100526 P3TCK_13918
SE S13 S13.001 D-Ala-D-Ala peptidase C MER0041369 S3440 PBPRA0599
SE S13 unassigned family S13 unassigned peptidases MER1314039
SF S24 S24.001 repressor LexA MER0041376 lexA PBPRA0165
SF S24 S24.003 UmuD protein MER0118059 P3TCK_08893
SF S24 unassigned family S24 unassigned peptidases MER1328647
SF S26 S26.001 signal peptidase I MER0041377 P3TCK_24906
SF S26 S26.014 TraF peptidase MER0269157 TIORF110 PBPRB1620
SJ S16 S16.001 Lon-A peptidase MER0041372 S0390 PBPRA2635
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0041374 PM0252 PBPRA0637
SJ S16 S16.A10 ycbZ (Escherichia coli) MER0041375 YCBZ PBPRA1774
SJ S16 unassigned family S16 unassigned peptidases MER0050424 LONB PBPRB0364
SK S14 S14.001 peptidase Clp (type 1) MER0041370 clpP PBPRA2637
SK S14 non-peptidase homologue family S14 non-peptidase homologues MER0050427 PI323 PBPRB1287
SK S14 non-peptidase homologue family S14 non-peptidase homologues MER0062249 P3TCK_17617
SK S14 non-peptidase homologue family S14 non-peptidase homologues MER0041371 BA4092 PBPRA1356
SK S14 unassigned family S14 unassigned peptidases MER1316342
SK S41 S41.001 C-terminal processing peptidase-1 MER0041385 P3TCK_20275
SK S49 non-peptidase homologue subfamily S49A unassigned non-peptidase homologues MER1065861 P3TCK_17617
SK S49 non-peptidase homologue subfamily S49A unassigned non-peptidase homologues MER1066728 PI323
SK S49 non-peptidase homologue subfamily S49A unassigned non-peptidase homologues MER1069822 BA4092
SK S49 unassigned subfamily S49A unassigned peptidases MER0041388 P3TCK_27312
SK S49 unassigned subfamily S49B unassigned peptidases MER0041389 P3TCK_27889
SK S49 unassigned subfamily S49C unassigned peptidases MER1071571 P3TCK_08321/PBPRB0890
ST S54 S54.016 GlpG peptidase (Escherichia-type) MER0041391 PLU0196 PBPRA0157
ST S54 unassigned family S54 unassigned peptidases MER1076229 P3TCK_10178/SEN0012
ST S54 unassigned family S54 unassigned peptidases MER0041392 VV10016 PBPRA2630
U- U32 U32.002 collagenase (Helicobacter-type) MER0041394 S2271 PBPRA0717
U- U32 U32.003 collagenase (Salmonella-type) MER0041397 P3TCK_19310
U- U32 U32.A01 YhbV protein (Escherichia coli) MER0041395 P3TCK_14003
U- U32 unassigned family U32 unassigned peptidases MER0041396 STM3274 PBPRA0619

GENOME ANALYSIS: Comparison with 9 completely sequenced genomes from genus Photobacterium
Family Comment
C25 significant presence (1 homologues)
C26 lineage specific expansion (8 homologues)
C44 lineage specific expansion (5 homologues)
C56 lineage specific expansion (7 homologues)
C59 significant decrease in homologues (1 homologues)
M14 significant decrease in homologues (2 homologues)
M16 lineage specific expansion (8 homologues)
M18 significant presence (1 homologues)
M20 lineage specific expansion (16 homologues)
M23 lineage specific expansion (8 homologues)
M24 lineage specific expansion (4 homologues)
M28 significant presence (1 homologues)
M38 lineage specific expansion (20 homologues)
M48 lineage specific expansion (4 homologues)
M78 significant presence (1 homologues)
S1 lineage specific expansion (10 homologues)
S9 lineage specific expansion (8 homologues)
S11 significant decrease in homologues (5 homologues)
S14 lineage specific expansion (5 homologues)
S33 lineage specific expansion (11 homologues)
S41 significant decrease in homologues (1 homologues)

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