Silicibacter sp. TM1040

Taxonomy
Taxonomy database identifier: 292414
Superkingdom Bacteria
Phylum Proteobacteria
Class Alphaproteobacteria
Order Rhodobacterales
Family Rhodobacteraceae
Genus Silicibacter
Species sp. TM1040
Peptidase View peptidase sequences from Silicibacter sp. TM1040
Count of known and putative peptidases: 96, non-peptidase homologues 52
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 A32.002 RC1339 g.p. (Rickettsia conorii) MER0241699 TM1040_0952
AC A8 unassigned family A8 unassigned peptidases MER0055511 lspA TM1040_0092
AC A8 unassigned family A8 unassigned peptidases MER1155750
AD A24 unassigned subfamily A24B unassigned peptidases MER0068681 TM1040_2354
CA C1 unassigned subfamily C1B unassigned peptidases MER0049041 TM1040_0842
CD C14 unassigned subfamily C14B unassigned peptidases MER0068867 TM1040_0843
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0461892 TM1040_3505
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0244036 TM1040_2896
CL C82 unassigned subfamily C82A unassigned peptidases MER0463406 TM1040_1105
CL C82 unassigned subfamily C82A unassigned peptidases MER0463407 TM1040_2898
CO C40 C40.001 dipeptidyl-peptidase VI (bacteria) MER0068840 TM1040_3454
CO C40 unassigned family C40 unassigned peptidases MER0068870 TM1040_1071
G- G5 G05.004 microcystinase MlrA MER0068677 TM1040_2149
G- G5 unassigned family G5 unassigned peptidases MER0068688 TM1040_2677
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0345916 TM1040_0594
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0055526 TM1040_0706
MA M3 unassigned subfamily M3A unassigned peptidases MER0068857 TM1040_0465
MA M3 unassigned family M3 unassigned peptidases MER0055520 TM1040_0569
MA M32 unassigned family M32 unassigned peptidases MER0068877 TM1040_1334
MA M41 unassigned family M41 unassigned peptidases MER0049030 ftsH TM1040_2361
MA M48 unassigned subfamily M48C unassigned peptidases MER0055523 TM1040_0591
MA M48 unassigned subfamily M48C unassigned peptidases MER0055525 TM1040_0698
MA M48 unassigned subfamily M48C unassigned peptidases MER0055532 TM1040_0890
MA M48 unassigned family M48 unassigned peptidases MER0055531 TM1040_0864
MA M56 unassigned family M56 unassigned peptidases MER0055510 TM1040_2423
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER0068873 TM1040_1217
MD M74 unassigned family M74 unassigned peptidases MER0055517 TM1040_2663
ME M16 M16.019 YMXG peptidase MER0055512 TM1040_0094
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0055513 TM1040_0095
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0065718 TM1040_2329
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0068852
ME M16 unassigned subfamily M16B unassigned peptidases MER0055507 TM1040_2329
MF M17 unassigned family M17 unassigned peptidases MER0068841 TM1040_3455
MF M17 unassigned family M17 unassigned peptidases MER0068868 pepA TM1040_0950
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0055509 TM1040_2469
MG M24 non-peptidase homologue subfamily M24B non-peptidase homologues MER0049034 TM1040_2710
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0049026 TM1040_1921
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0049029 TM1040_2491
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0049042 TM1040_1016
MG M24 unassigned subfamily M24B unassigned peptidases MER0049035 TM1040_2712
MG M24 unassigned subfamily M24B unassigned peptidases MER0049040 TM1040_0641
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0068689 TM1040_2689
MH M20 unassigned subfamily M20A unassigned peptidases MER0055516 dapE2 TM1040_3116
MH M20 unassigned subfamily M20A unassigned peptidases MER0068697 dapE1 TM1040_2996
MH M20 unassigned subfamily M20B unassigned peptidases MER0055524 TM1040_0648
MH M20 unassigned family M20D unassigned peptidases MER0049039 TM1040_0512
MH M20 unassigned family M20D unassigned peptidases MER0055527 TM1040_0718
MH M20 unassigned family M20D unassigned peptidases MER0055528 TM1040_0719
MH M20 unassigned family M20D unassigned peptidases MER0055533 TM1040_0937
MH M20 unassigned subfamily M20F unassigned peptidases MER0055530 TM1040_0859
MH M20 unassigned family M20 unassigned peptidases MER0049032 TM1040_3265
MH M20 unassigned family M20 unassigned peptidases MER0052499 TM1040_3597
MH M20 unassigned family M20 unassigned peptidases MER0055537 TM1040_1370
MH M20 unassigned family M20 unassigned peptidases MER0068865 TM1040_0717
MH M20 unassigned family M20 unassigned peptidases MER0068882 TM1040_1498
MJ M19 non-peptidase homologue family M19 non-peptidase homologues MER0049033 TM1040_3382
MJ M19 unassigned family M19 unassigned peptidases MER0049031 TM1040_0039
MJ M19 unassigned family M19 unassigned peptidases MER0049038 TM1040_0564
MJ M38 M38.973 dihydropyrimidinase MER0068881 TM1040_1497
MJ M38 M38.982 urease MER0068853 ureC TM1040_0385
MJ M38 M38.A02 PyrC protein (Escherichia coli) MER0068666 pyrC TM1040_1776
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068834 TM1040_3072
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068835 TM1040_3148
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068842 TM1040_3479
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068849 TM1040_3695
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068672 TM1040_1905
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068673 TM1040_1906
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068693 ade TM1040_2799
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068698 TM1040_3003
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068699 hutI TM1040_3004
MM M50 unassigned family M50 unassigned peptidases MER0055536 TM1040_1409
MO M23 M23.009 Mername-AA292 peptidase MER0055535 TM1040_1089
MO M23 non-peptidase homologue family M23 non-peptidase homologues MER0055505 TM1040_1793
MO M23 unassigned family M23 unassigned peptidases MER0055514 TM1040_3387
MS M75 M75.001 imelysin MER0042595 TM1040_2199
MT M81 unassigned family M81 unassigned peptidases MER0223245 TM1040_2751
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0049028 TM1040_2337
MU M103 M103.UNW family M103 non-peptidase homologues MER0049025 TM1040_2639
NB N6 unassigned family N6 unassigned peptide lyases MER0405858 flhB TM1040_2955
PA S1 S01.260 B1598 peptidase MER0068859 TM1040_0527
PA S1 S01.260 B1598 peptidase MER0068684 TM1040_2499
PA S1 unassigned subfamily S1C unassigned peptidases MER0051789 TM1040_1953
PA S1 unassigned subfamily S1C unassigned peptidases MER0055522 TM1040_0287
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0068668 TM1040_1787
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0068695 TM1040_2823
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0068866 TM1040_0727
PB C44 unassigned family C44 unassigned peptidases MER0068874 TM1040_1234
PB S45 S45.003 cephalosporin C acylase precursor MER0068878 TM1040_1354
PB T1 T01.006 HslV component of HslUV peptidase MER0049036 hslV TM1040_2849
PB T1 unassigned family T1 unassigned peptidases MER0068676 TM1040_2117
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0068858 TM1040_0482
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0068851 TM1040_0064
PB T3 unassigned family T3 unassigned peptidases MER0068846 TM1040_3598
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0068872 TM1040_1141
PC C26 C26.957 GMP synthase MER0068879 guaA TM1040_1375
PC C26 C26.964 CTP synthetase MER0449375 pyrG TM1040_1973
PC C26 C26.A05 gamma-glutamyl peptidase 1 (Arabidopsis thaliana) MER0068670 TM1040_1837
PC C26 unassigned family C26 unassigned peptidases MER0068833 TM1040_3054
PC C26 unassigned family C26 unassigned peptidases MER0068850 TM1040_3722
PC C26 unassigned family C26 unassigned peptidases MER0068864 TM1040_0710
PC C26 unassigned family C26 unassigned peptidases MER0444559 hisH TM1040_2034
PC C26 unassigned family C26 unassigned peptidases MER0441750 carA TM1040_2294
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068837 TM1040_3293
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068838 TM1040_3379
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068848 TM1040_3678
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068876 TM1040_1270
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068884 TM1040_1528
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068891 TM1040_1750
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068678 TM1040_2189
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068692 TM1040_2797
PE P1 P01.101 pantetheinyl hydrolase ThnT precursor MER0051790 TM1040_2667
PE T5 T05.001 ornithine acetyltransferase precursor MER0068696 argJ TM1040_2915
SB S8 unassigned subfamily S8B unassigned peptidases MER0049027 TM1040_3847
SC S9 S09.A39 YeiG protein (Escherichi coli) MER0068839 TM1040_3448
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0068883 TM1040_1525
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0068683 TM1040_2492
SC S9 unassigned subfamily S9B unassigned peptidases MER0068869 TM1040_1013
SC S9 unassigned subfamily S9C unassigned peptidases MER0068855 TM1040_0451
SC S9 unassigned subfamily S9C unassigned peptidases MER0068875 TM1040_1239
SC S9 unassigned family S9 unassigned peptidases MER0068890 TM1040_1720
SC S9 unassigned family S9 unassigned peptidases MER0068669 TM1040_1826
SC S15 unassigned family S15 unassigned peptidases MER0055521 TM1040_0391
SC S33 S33.001 prolyl aminopeptidase MER0049037 TM1040_2907
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0068836 TM1040_3227
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0068847 TM1040_3670
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0068861 TM1040_0570
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0068889 TM1040_1718
SC S33 unassigned family S33 unassigned peptidases MER0068843 TM1040_3567
SC S33 unassigned family S33 unassigned peptidases MER0068844 TM1040_3569
SC S33 unassigned family S33 unassigned peptidases MER0068860 TM1040_0560
SC S33 unassigned family S33 unassigned peptidases MER0068880 TM1040_1380
SC S33 unassigned family S33 unassigned peptidases MER0068885 TM1040_1586
SC S33 unassigned family S33 unassigned peptidases MER0068888 TM1040_1702
SC S33 unassigned family S33 unassigned peptidases MER0068674 TM1040_1964
SC S33 unassigned family S33 unassigned peptidases MER0068675 TM1040_2073
SC S33 unassigned family S33 unassigned peptidases MER0068687 TM1040_2671
SE S11 unassigned family S11 unassigned peptidases MER0068845 TM1040_3590
SE S11 unassigned family S11 unassigned peptidases MER0068686 TM1040_2536
SE S12 unassigned family S12 unassigned peptidases MER0068671 TM1040_1900
SE S12 unassigned family S12 unassigned peptidases MER0068694 TM1040_2807
SE S13 unassigned family S13 unassigned peptidases MER0055506 TM1040_2259
SF S24 S24.001 repressor LexA MER0068871 lexA TM1040_1135
SF S26 S26.001 signal peptidase I MER0055508 TM1040_2560
SH S78 S78.001 prohead peptidase (bacteriophage HK97) MER0055534 gp35 TM1040_1060
SH S78 S78.001 prohead peptidase (bacteriophage HK97) MER0049043 TM1040_1669
SJ S16 S16.001 Lon-A peptidase MER0055529 TM1040_0775
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0068667 TM1040_1784
SK S14 S14.001 peptidase Clp (type 1) MER0049044 clpP TM1040_1527
SK S41 S41.004 C-terminal processing peptidase-3 MER0068690 TM1040_2755
SK S49 non-peptidase homologue subfamily S49A unassigned non-peptidase homologues MER0068886 gp18 TM1040_1623
SK S49 non-peptidase homologue subfamily S49A unassigned non-peptidase homologues MER0068685 TM1040_2523
ST S54 S54.027 RhoII peptidase (Haloferax volcanii) and similar MER0068887 TM1040_1696
ST S54 non-peptidase homologue family S54 non-peptidase homologues MER0068854 TM1040_0444

GENOME ANALYSIS: Comparison with 100 completely sequenced genomes from family Rhodobacteraceae
Family Comment
C1 significant presence (1 homologues)
G4 significant presence (1 homologues)