Oligotropha carboxidovorans

Taxonomy
Taxonomy database identifier: 40137
Superkingdom Bacteria
Phylum Proteobacteria
Class Alphaproteobacteria
Order Rhizobiales
Family Bradyrhizobiaceae
Genus Oligotropha
Species carboxidovorans
Peptidase View peptidase sequences from Oligotropha carboxidovorans
Count of known and putative peptidases: 111, non-peptidase homologues 48
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 A32.001 PerP peptidase (Caulobacter sp.) MER0233563 OCAR_6544
AA A32 unassigned family A32 unassigned peptidases MER0241639 OCAR_7563
AC A8 unassigned family A8 unassigned peptidases MER0134249 lspA OCAR_7236
AD A24 unassigned subfamily A24A unassigned peptidases MER0134261 cpaA OCAR_7418
AE A31 A31.002 HyaD peptidase MER0137208 hoxM OCA5_pHCG300610
CA C93 unassigned family C93 unassigned peptidases MER0394259 OCAR_6039
CA C96 non-peptidase homologue family C96 non-peptidase homologues MER0745862 OCA5_c06460
CD C14 non-peptidase homologue family C14 non-peptidase homologues MER0134186 OCAR_5954
CF C15 unassigned family C15 unassigned peptidases MER0134219 pcp OCAR_6647
CL C82 C82.003 ykuD transpeptidase MER0134120 OCAR_4332
CL C82 C82.003 ykuD transpeptidase MER0134133 OCAR_4636
CL C82 C82.003 ykuD transpeptidase MER0134230 OCAR_6915
CL C82 C82.003 ykuD transpeptidase MER0134247 OCAR_7123
CL C82 C82.003 ykuD transpeptidase MER0134254 OCAR_7267
CL C82 C82.003 ykuD transpeptidase MER0134260 OCAR_7397
CL C82 unassigned subfamily C82A unassigned peptidases MER0134242 OCAR_7050
CL C82 unassigned subfamily C82A unassigned peptidases MER0243899 OCAR_4080
CL C82 unassigned subfamily C82A unassigned peptidases MER0134204 OCAR_6329
CL C82 unassigned subfamily C82A unassigned peptidases MER0134157 OCAR_5261
CO C40 C40.001 dipeptidyl-peptidase VI (bacteria) MER0134263 OCAR_7427
CO C40 unassigned family C40 unassigned peptidases MER0134144 OCAR_4842
CO C40 unassigned family C40 unassigned peptidases MER0903004
CO C40 unassigned family C40 unassigned peptidases MER0134215 OCAR_6588
G- G5 G05.007 MroQ peptidase (Staphylococcus aureus) MER0134179 OCAR_5792
MA M3 unassigned subfamily M3A unassigned peptidases MER0134146 dcp OCAR_4921
MA M3 unassigned subfamily M3B unassigned peptidases MER0134153 pepF OCAR_5090
MA M41 M41.001 FtsH peptidase MER0134255 ftsH OCAR_7286
MA M48 unassigned subfamily M48B unassigned peptidases MER0134237 htpX OCAR_6989
MA M48 unassigned subfamily M48C unassigned peptidases MER0134115 OCAR_4057
MA M48 unassigned family M48 unassigned peptidases MER0134189 OCAR_5983
MD M74 unassigned family M74 unassigned peptidases MER0134266 mepA OCAR_7583
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0134251 OCAR_7239
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0134252 OCAR_7239
ME M16 unassigned subfamily M16B unassigned peptidases MER0134137 OCAR_4694
ME M16 unassigned subfamily M16B unassigned peptidases MER0134250 OCAR_7238
MF M17 unassigned family M17 unassigned peptidases MER0134205 pepA OCA5_c16900
MF M17 unassigned family M17 unassigned peptidases MER0134262 pepA1 OCAR_7426
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0134267 map OCAR_7594
MG M24 M24.009 aminopeptidase P1 MER0134156 OCAR_5256
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0134257 OCAR_7356
MH M20 unassigned subfamily M20A unassigned peptidases MER0134265 dapE OCA5_c06040
MH M20 unassigned subfamily M20B unassigned peptidases MER0134185 pepT OCAR_5917
MH M20 unassigned family M20D unassigned peptidases MER0134220 OCAR_6660
MH M20 unassigned subfamily M20F unassigned peptidases MER0134218 OCAR_6639
MH M20 unassigned family M20 unassigned peptidases MER0134221 amaB OCAR_6699
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0134132 codA OCAR_4627
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0134178 pyrC2 OCAR_5787
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0134232 pyrC1 OCAR_6931
MJ M38 unassigned family M38 unassigned peptidases MER0134264 OCAR_7510
MM M50 unassigned subfamily M50B unassigned peptidases MER0134187 rseP OCAR_5962
MO M23 M23.009 Mername-AA292 peptidase MER0134142 OCAR_4781
MO M23 M23.009 Mername-AA292 peptidase MER0134190 OCA4_c20320
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0134200 OCAR_6260
MO M23 non-peptidase homologue family M23 non-peptidase homologues MER0134130 OCAR_4601
MO M23 unassigned subfamily M23B unassigned peptidases MER0478991 OCA4_pHCG3B00210
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0134136 OCAR_4682
MU M103 M103.950 microcin-processing peptidase 1 homologue MER0134253 pmbA OCAR_7256
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0273772 flhB OCAR_5400
PA S1 unassigned subfamily S1A unassigned peptidases MER0134216 OCAR_6598
PA S1 unassigned subfamily S1C unassigned peptidases MER0134158 degP2 OCAR_5281
PA S1 unassigned subfamily S1C unassigned peptidases MER0134171 degP1 OCAR_5708
PA S1 unassigned subfamily S1C unassigned peptidases MER0134214 OCAR_6572
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0134207 purF OCAR_6382
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0134147 gltB OCAR_4939
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0134197 glmS OCAR_6216
PB C59 unassigned family C59 unassigned peptidases MER0134240 OCAR_7036
PB T1 T01.006 HslV component of HslUV peptidase MER0134122 hslV OCA5_c01370
PB T1 unassigned family T1 unassigned peptidases MER0134167 OCAR_5506
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0134121 ggt1 OCA5_c01880
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0134131 ggt3/ggt5 OCAR_4626
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0134176 ggt OCAR_5746
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0134234 ggt4 OCAR_6970
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0134258 ggt2 OCAR_7358
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0134155 pabB OCAR_5217
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0134238 OCAR_6993
PC C26 C26.964 CTP synthetase MER0134201 pyrG OCAR_6300
PC C26 C26.A07 At1g63660 (Arabidopsis thaliana) MER0134212 guaA OCA5_c15850
PC C26 unassigned family C26 unassigned peptidases MER0134123 hisH OCAR_4397
PC C26 unassigned family C26 unassigned peptidases MER0134228 OCAR_6887
PC C26 unassigned family C26 unassigned peptidases MER0134154 carA OCAR_5135
PC C56 C56.001 PfpI peptidase MER0134199 pfpI OCAR_6248
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0134139 OCAR_4713
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0134164 purQ OCAR_5451
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0134225 OCAR_6811
PE P1 P01.101 pantetheinyl hydrolase ThnT precursor MER0134165 dmpA OCAR_5473
PE T5 T05.001 ornithine acetyltransferase precursor MER0134116 argJ OCAR_4085
SB S8 unassigned subfamily S8A unassigned peptidases MER0134210 OCAR_6418
SB S8 unassigned subfamily S8A unassigned peptidases MER0134268 OCAR_7655
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0134149 OCAR_4970
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0134172 OCAR_5723
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0134173 OCAR_5724
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0134227 OCAR_6853
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0134239 OCAR_6994
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0134243 OCAR_7059
SC S9 unassigned family S9 unassigned peptidases MER0134118 OCAR_4313
SC S9 unassigned family S9 unassigned peptidases MER0134126 OCAR_4445
SC S9 unassigned family S9 unassigned peptidases MER0134191 OCAR_5997
SC S9 unassigned family S9 unassigned peptidases MER0134244 OCAR_7093
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0134140 OCAR_4737
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0134145 phbC OCAR_4862
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0134174 OCAR_5732
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0134181 OCAR_5828
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0134192 OCAR_6012
SC S33 unassigned family S33 unassigned peptidases MER0134125 OCAR_4430
SC S33 unassigned family S33 unassigned peptidases MER0134141 metX OCAR_4776
SC S33 unassigned family S33 unassigned peptidases MER0134148 pldB OCAR_4944
SC S33 unassigned family S33 unassigned peptidases MER0134166 pcaD OCAR_5483
SC S33 unassigned family S33 unassigned peptidases MER0134168 OCAR_5517
SC S33 unassigned family S33 unassigned peptidases MER0134224 OCAR_6762
SC S33 unassigned family S33 unassigned peptidases MER0134241 OCAR_7038
SE S11 unassigned family S11 unassigned peptidases MER0134177 dacA2 OCAR_5762
SE S11 unassigned family S11 unassigned peptidases MER0134195 OCAR_6128
SE S11 unassigned family S11 unassigned peptidases MER0134222 OCAR_6709
SE S11 unassigned family S11 unassigned peptidases MER0134259 dacA1 OCAR_7377
SF S24 S24.001 repressor LexA MER0134202 lexA OCA5_c17250
SF S24 unassigned family S24 unassigned peptidases MER0134134 OCAR_4671
SF S24 unassigned family S24 unassigned peptidases MER0273776 OCA5_c24450
SF S26 S26.001 signal peptidase I MER0134135 lepB OCAR_4681
SF S26 S26.001 signal peptidase I MER0134182 lepB OCAR_5841
SF S26 S26.014 TraF peptidase MER0134113 traF2 OCA4_c05000
SF S26 S26.014 TraF peptidase MER0134117 traF1 OCAR_4199
SF S26 S26.014 TraF peptidase MER0134211 traF3 OCAR_6448
SF S26 S26.014 TraF peptidase MER0140690 traF OCA5_pHCG301080
SH S78 S78.001 prohead peptidase (bacteriophage HK97) MER0134196 OCAR_6166
SH S78 S78.001 prohead peptidase (bacteriophage HK97) MER0134217 OCAR_6606
SJ S16 S16.001 Lon-A peptidase MER0134184 lon OCAR_5911
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0134206 radA OCAR_6379
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0134124 OCAR_4405
SK S14 S14.001 peptidase Clp (type 1) MER0134183 clpP OCA5_c21110
SK S41 S41.004 C-terminal processing peptidase-3 MER0134129 ctpA OCAR_4600
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER0134114 OCAR_4016
SK S49 S49.003 protein C (bacteriophage lambda) MER0134143 OCAR_4828
SK S49 unassigned subfamily S49B unassigned peptidases MER0134127 OCAR_4473
SK S49 unassigned subfamily S49B unassigned peptidases MER0134233 OCAR_6955
SK S49 unassigned subfamily S49B unassigned peptidases MER1354148
SK S49 unassigned subfamily S49B unassigned peptidases MER0134169 OCAR_5580
ST S54 unassigned family S54 unassigned peptidases MER0134170 OCAR_5608
U- U32 U32.A01 YhbV protein (Escherichia coli) MER0134151 OCAR_5038
U- U32 unassigned family U32 unassigned peptidases MER0134150 OCAR_5037
U- U69 unassigned family U69 unassigned peptidases MER0273778 OCA5_c19890
U- U69 unassigned family U69 unassigned peptidases MER0273779 OCA5_c19890
U- U69 unassigned family U69 unassigned peptidases MER0273780 OCA5_c19890
U- U69 unassigned family U69 unassigned peptidases MER0273781 OCA5_c19890
U- U69 unassigned family U69 unassigned peptidases MER0273782 OCA5_c19890
U- U69 unassigned family U69 unassigned peptidases MER0273783 OCA5_c19890

GENOME ANALYSIS: Comparison with 27 completely sequenced genomes from family Bradyrhizobiaceae
Family Comment
C14 significant decrease in homologues (1 homologues)
C96 significant presence (1 homologues)
S14 significant decrease in homologues (1 homologues)
U32 significant presence (2 homologues)
U69 significant presence (6 homologues)