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information

Rhodoferax ferrireducens

Taxonomy
Taxonomy database identifier: 192843
Superkingdom Bacteria
Phylum Proteobacteria
Class Betaproteobacteria
Order Burkholderiales
Family Comamonadaceae
Genus Rhodoferax
Species ferrireducens
Peptidase View peptidase sequences from Rhodoferax ferrireducens
Count of known and putative peptidases: 105, non-peptidase homologues 35
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 unassigned family A32 unassigned peptidases MER0241976 Rfer_1207
AC A8 unassigned family A8 unassigned peptidases MER0055606 lspA Rfer_1431
AC A8 unassigned family A8 unassigned peptidases MER1152757
AD A24 A24.001 type 4 prepilin peptidase 1 MER0055587 Rfer_2904
AD A24 unassigned subfamily A24A unassigned peptidases MER0055602 Rfer_0790
AD A24 unassigned subfamily A24A unassigned peptidases MER1157168
AE A31 A31.001 HybD peptidase MER0060045 Rfer_4092
AE A31 A31.004 hoxW peptidase MER0060043 Rfer_3854
CA C93 unassigned family C93 unassigned peptidases MER0393339 Rfer_3763
CD C14 C14.048 bacterial metacaspase MER0059967 Rfer_1229
CF C15 C15.001 pyroglutamyl-peptidase I (prokaryote) MER0055605 pcp Rfer_0871
CO C40 C40.006 PgpA peptidase MER0059956 Rfer_0741
CO C40 C40.006 PgpA peptidase MER0059991 Rfer_2100
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0068397 Rfer_2703
MA M3 unassigned subfamily M3A unassigned peptidases MER0059963 Rfer_1048
MA M3 unassigned subfamily M3A unassigned peptidases MER0059995 Rfer_2208
MA M32 M32.003 TcMCP1 carboxypeptidase MER0060026 Rfer_3175
MA M41 M41.001 FtsH peptidase MER0055584 ftsH1 Rfer_2011
MA M41 unassigned family M41 unassigned peptidases MER0055590 ftsH2 Rfer_2418
MA M41 unassigned family M41 unassigned peptidases MER0055601 Rfer_0117
MA M48 M48.002 HtpX peptidase MER0055591 htpX Rfer_3463
MA M48 unassigned subfamily M48A unassigned peptidases MER0055607 Rfer_1411
MA M48 unassigned subfamily M48C unassigned peptidases MER0055611 Rfer_4041
MA M48 unassigned subfamily M48C unassigned peptidases MER0055616 Rfer_0517
MA M61 unassigned family M61 unassigned peptidases MER0055579 Rfer_1574
MA M90 unassigned family M90 unassigned peptidases MER0228845 Rfer_3456
MC M14 non-peptidase homologue subfamily M14D non-peptidase homologues MER0055569 Rfer_3575
MC M14 unassigned family M14 unassigned peptidases MER0059987 Rfer_2025
ME M16 M16.019 YMXG peptidase MER0055594 Rfer_1671
ME M16 unassigned subfamily M16B unassigned peptidases MER0055593 Rfer_1670
MF M17 M17.003 PepA aminopeptidase MER0059992 pepA Rfer_2116
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0055589 Rfer_2421
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0055604 Rfer_0852
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER1241425
MG M24 unassigned subfamily M24B unassigned peptidases MER0055582 Rfer_0086
MG M24 unassigned subfamily M24B unassigned peptidases MER1244030
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0059934 Rfer_0166
MH M20 unassigned subfamily M20A unassigned peptidases MER0059988 dapE Rfer_2044
MH M20 unassigned family M20D unassigned peptidases MER0055571 Rfer_3615
MH M20 unassigned family M20 unassigned peptidases MER0059933 Rfer_0165
MH M20 unassigned family M20 unassigned peptidases MER0055615 Rfer_0403
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068385 Rfer_0139
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068390 Rfer_1381
MM M50 unassigned subfamily M50B unassigned peptidases MER0055585 Rfer_1995
MM M50 unassigned subfamily M50B unassigned peptidases MER0055620 Rfer_3239
MN M55 unassigned family M55 unassigned peptidases MER0055621 Rfer_3107
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0055581 Rfer_2780
MO M23 unassigned subfamily M23B unassigned peptidases MER0055588 Rfer_2912
MO M23 unassigned subfamily M23B unassigned peptidases MER0055613 Rfer_0727
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0055618 Rfer_3369
MU M103 M103.UNW family M103 non-peptidase homologues MER0055586 Rfer_2887
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0405829 Rfer_3706
PA S1 S01.477 AlgW peptidase MER0055573 Rfer_2959
PA S1 unassigned subfamily S1C unassigned peptidases MER0055610 Rfer_3822
PA S1 unassigned subfamily S1C unassigned peptidases MER0055614 Rfer_0710
PA S1 unassigned subfamily S1C unassigned peptidases MER1272721
PA S1 unassigned subfamily S1C unassigned peptidases MER0055595 Rfer_1739 Rfer_1739
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0060007 Rfer_2683
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0060040 Rfer_3652
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0060018 Rfer_2933
PB C44 C44.A08 glutamine-fructose-6-phosphate transaminase precursor (Dictyostelium discoideum) MER0059964 Rfer_1074
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0059950 Rfer_0671
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0059951 Rfer_0683
PB C44 unassigned family C44 unassigned peptidases MER0059949 Rfer_0669
PB C44 unassigned family C44 unassigned peptidases MER0059957 Rfer_0766
PB S45 S45.003 cephalosporin C acylase precursor MER0059973 Rfer_1547
PB T1 T01.007 CodW component of CodWX peptidase MER0055592 hslV Rfer_3436
PB T2 unassigned family T2 unassigned peptidases MER0055617 Rfer_3409
PB T2 unassigned family T2 unassigned peptidases MER0055623 Rfer_3101
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0060032 Rfer_3386
PC C26 C26.954 carA protein MER0059985 Rfer_2004
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0060038 Rfer_3605
PC C26 C26.957 GMP synthase MER0059999 guaA Rfer_2287
PC C26 C26.961 PuuD protein MER0059942 Rfer_0349
PC C26 unassigned family C26 unassigned peptidases MER0060008 Rfer_2694
PC C56 C56.972 phosphoribosylformylglycinamidine synthase MER0068394 Rfer_2420
PC C56 C56.A06 DDB_G0276405 (Dictyostelium discoideum) MER0055580 Rfer_2768
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0059926 Rfer_0019
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068395 Rfer_2521
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068396 Rfer_2523
PC S51 non-peptidase homologue family S51 non-peptidase homologues MER1059171 Rfer_3268
PE P1 unassigned family P01 unassigned peptidases MER0055622 Rfer_3106
PE T5 T05.001 ornithine acetyltransferase precursor MER0060016 argJ Rfer_2910
SB S53 unassigned family S53 unassigned peptidases MER0055578 Rfer_1577
SC S9 S09.940 S-formylglutathione hydrolase FrmB (Escherichi coli) MER0059929 Rfer_0122
SC S9 S09.A47 aes protein (acetyl esterase) (Escherichi coli) MER0059972 Rfer_1444
SC S9 S09.B04 BSU23640 g.p. (Bacillus subtilis) MER0068387 Rfer_0395
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0059952 Rfer_0694
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0059953 Rfer_0697
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0060004 Rfer_2416
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0060029 Rfer_3313
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0210392 Rfer_3810
SC S9 unassigned subfamily S9C unassigned peptidases MER0059965 Rfer_1129
SC S9 unassigned subfamily S9C unassigned peptidases MER0068388 Rfer_1105
SC S9 unassigned family S9 unassigned peptidases MER0059940 Rfer_0323
SC S9 unassigned family S9 unassigned peptidases MER0060002 Rfer_2383
SC S9 unassigned family S9 unassigned peptidases MER0215444 Rfer_3991
SC S33 S33.001 prolyl aminopeptidase MER0055583 Rfer_0089
SC S33 S33.009 Mername-AA086 putative peptidase MER0060001 Rfer_2371
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0059998 Rfer_2286
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0060027 Rfer_3189
SC S33 unassigned family S33 unassigned peptidases MER0059937 Rfer_0215
SC S33 unassigned family S33 unassigned peptidases MER0059938 Rfer_0307
SC S33 unassigned family S33 unassigned peptidases MER0059939 Rfer_0311
SC S33 unassigned family S33 unassigned peptidases MER0059943 Rfer_0402
SC S33 unassigned family S33 unassigned peptidases MER0059945 metX Rfer_0406
SC S33 unassigned family S33 unassigned peptidases MER0059983 Rfer_1830
SC S33 unassigned family S33 unassigned peptidases MER0059990 Rfer_2070
SC S33 unassigned family S33 unassigned peptidases MER0060009 Rfer_2699
SC S33 unassigned family S33 unassigned peptidases MER0060013 Rfer_2846
SC S33 unassigned family S33 unassigned peptidases MER0060025 Rfer_3159
SC S33 unassigned family S33 unassigned peptidases MER1340574
SC S33 unassigned family S33 unassigned peptidases MER0059941 Rfer_0334
SE S11 S11.002 murein-DD-endopeptidase MER0060000 Rfer_2346
SE S11 S11.002 murein-DD-endopeptidase MER0055572 Rfer_1156
SE S11 unassigned family S11 unassigned peptidases MER0059962 Rfer_0920
SE S11 unassigned family S11 unassigned peptidases MER0060041 Rfer_3801
SE S12 S12.950 esterase EstB MER0059994 Rfer_2189
SE S12 unassigned family S12 unassigned peptidases MER0060036 Rfer_3570
SE S13 S13.003 D-Ala-D-Ala carboxypeptidase PBP3 MER0055597 Rfer_0191
SE S13 unassigned family S13 unassigned peptidases MER1314823
SF S24 S24.001 repressor LexA MER0055574 lexA Rfer_2994
SF S24 S24.003 UmuD protein MER0055567 Rfer_4342
SF S26 S26.001 signal peptidase I MER0055596 Rfer_1741
SJ S16 S16.001 Lon-A peptidase MER0055576 Rfer_1556
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0059947 Rfer_0500
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0060047 Rfer_4298
SJ S16 unassigned family S16 unassigned peptidases MER0059959 Rfer_0831
SJ S16 unassigned family S16 unassigned peptidases MER0055619 Rfer_3315
SJ S16 unassigned family S16 unassigned peptidases MER0055575 Rfer_3006
SK S14 S14.001 peptidase Clp (type 1) MER0055577 clpP Rfer_1554
SK S14 unassigned family S14 unassigned peptidases MER1319018
SK S41 S41.004 C-terminal processing peptidase-3 MER0055609 Rfer_1308
SK S49 unassigned subfamily S49B unassigned peptidases MER0059980 Rfer_1724
SK S49 unassigned subfamily S49B unassigned peptidases MER0059993 Rfer_2149
SK S49 unassigned subfamily S49B unassigned peptidases MER1355511
SK S49 unassigned subfamily S49B unassigned peptidases MER1355778
SS S66 S66.002 murein tetrapeptidase LD-carboxypeptidase (Escherichia-type) MER0059996 Rfer_2285
U- U32 U32.002 collagenase (Helicobacter-type) MER0055608 Rfer_1385
U- U32 U32.003 collagenase (Salmonella-type) MER0055570 Rfer_2414
U- U32 U32.A01 YhbV protein (Escherichia coli) MER0055600 Rfer_0135
U- U32 unassigned family U32 unassigned peptidases MER0055599 Rfer_0136

GENOME ANALYSIS: Comparison with 31 completely sequenced genomes from family Comamonadaceae
Family Comment
A31 significant presence (2 homologues)
C14 significant presence (1 homologues)
C44 lineage specific expansion (8 homologues)
C93 significant presence (1 homologues)
M32 significant presence (1 homologues)
S53 significant presence (1 homologues)

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