Parvularcula bermudensis

Taxonomy
Taxonomy database identifier: 208216
Superkingdom Bacteria
Phylum Proteobacteria
Class Alphaproteobacteria
Order Parvularculales
Family Parvularculaceae
Genus Parvularcula
Species bermudensis
Peptidase View peptidase sequences from Parvularcula bermudensis
Count of known and putative peptidases: 83, non-peptidase homologues 34
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 unassigned family A32 unassigned peptidases MER0241975 PB2503_04147
AC A8 unassigned family A8 unassigned peptidases MER0063312 lspA PB2503_02707
AD A24 unassigned subfamily A24A unassigned peptidases MER0184780 PB2503_08559
AD A24 unassigned subfamily A24B unassigned peptidases MER0063009
CO C40 C40.001 dipeptidyl-peptidase VI (bacteria) MER0119931 PB2503_03942
CO C40 unassigned family C40 unassigned peptidases MER0222895 PB2503_08124
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0314583 PB2503_04632
MA M1 unassigned family M1 unassigned peptidases MER0083265
MA M3 unassigned subfamily M3A unassigned peptidases MER0103274 PB2503_08254
MA M13 unassigned family M13 unassigned peptidases MER0063004 PB2503_02032
MA M36 unassigned family M36 unassigned peptidases MER0107925 PB2503_04017
MA M41 M41.001 FtsH peptidase MER0105472
MA M48 unassigned subfamily M48B unassigned peptidases MER0222877 htpX PB2503_04352
MA M48 unassigned subfamily M48C unassigned peptidases MER0222917 PB2503_11744
MA M48 unassigned family M48 unassigned peptidases MER0222900 PB2503_09789
MC M14 unassigned subfamily M14D unassigned peptidases MER0083262 PB2503_03307
MD M15 unassigned subfamily M15B unassigned peptidases MER0222869 PB2503_00787
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0063005 PB2503_04687
ME M16 unassigned subfamily M16B unassigned peptidases MER0063006 PB2503_04687
MF M17 unassigned family M17 unassigned peptidases MER0083258
MF M17 unassigned family M17 unassigned peptidases MER0083268
MG M24 M24.009 aminopeptidase P1 MER0222909 PB2503_10779
MG M24 unassigned subfamily M24A unassigned peptidases MER0083263
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0222912 PB2503_11514
MH M20 unassigned subfamily M20A unassigned peptidases MER0125734
MH M20 unassigned family M20 unassigned peptidases MER0123344 PB2503_11044
MH M28 unassigned family M28 unassigned peptidases MER0117091 PB2503_12124
MH M28 unassigned family M28 unassigned peptidases MER0100891 PB2503_09129
MJ M19 unassigned family M19 unassigned peptidases MER0189241 PB2503_03792
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0222907 PB2503_10574
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0222913 PB2503_11574
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0222914 PB2503_11584
MM M50 unassigned family M50 unassigned peptidases MER0222872 PB2503_02452
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0479913 PB2503_00887
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0222908 PB2503_10704
MO M23 non-peptidase homologue family M23 non-peptidase homologues MER0222880 PB2503_05157
MO M23 unassigned subfamily M23B unassigned peptidases MER0063642 PB2503_09334
MO M23 unassigned subfamily M23B unassigned peptidases MER0063487 PB2503_10569
MO M23 unassigned subfamily M23B unassigned peptidases MER0063488
MO M23 unassigned subfamily M23B unassigned peptidases MER0189724 PB2503_01047
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0119117
MU M103 M103.UNW family M103 non-peptidase homologues MER0105764 PB2503_06732
NB N6 unassigned family N6 unassigned peptide lyases MER0222893 PB2503_07979
PA S1 unassigned subfamily S1C unassigned peptidases MER0060790
PA S1 unassigned subfamily S1C unassigned peptidases MER0060793
PA S1 unassigned subfamily S1C unassigned peptidases MER0222898 PB2503_09059
PA S46 S46.003 dipeptidyl-peptidase BII (Pseudoxanthomonas mexicana) MER0108988 PB2503_00100
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0122689 PB2503_02787
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0222920 PB2503_13084
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0458225 PB2503_11474
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0222906 glmS PB2503_10424
PB T1 T01.006 HslV component of HslUV peptidase MER0060794
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0107456 PB2503_07999
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0107455 PB2503_11509
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0222923 PB2503_13264
PC C26 C26.957 GMP synthase MER0222904 guaA PB2503_10069
PC C26 C26.964 CTP synthetase MER0451440 pyrG PB2503_12044
PC C26 C26.A05 gamma-glutamyl peptidase 1 (Arabidopsis thaliana) MER0222871 PB2503_01757
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0222911 PB2503_11454
PC C26 unassigned family C26 unassigned peptidases MER0448957 hisH PB2503_05497
PC C26 unassigned family C26 unassigned peptidases MER0222921 carA PB2503_13089
PC C56 C56.001 PfpI peptidase MER0059341 PB2503_07092
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0222916 PB2503_11724
PE P1 P01.101 pantetheinyl hydrolase ThnT precursor MER0222894 PB2503_08004
SB S8 unassigned subfamily S8A unassigned peptidases MER0062548 PB2503_11684
SC S9 S09.009 dipeptidyl-peptidase 4 (bacteria-type 1) MER0063485 PB2503_12059
SC S9 S09.010 oligopeptidase B MER0063007 PB2503_04937
SC S9 S09.940 S-formylglutathione hydrolase FrmB (Escherichi coli) MER0222876 PB2503_03847
SC S9 S09.986 carboxylesterase-related protein MER0222919 PB2503_12744
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0214493 PB2503_10749
SC S9 unassigned subfamily S9A unassigned peptidases MER0083267 PB2503_04472
SC S9 unassigned subfamily S9B unassigned peptidases MER0083257 PB2503_11399 PB2503_11399
SC S9 unassigned family S9 unassigned peptidases MER0222878 PB2503_04857
SC S9 unassigned family S9 unassigned peptidases MER0222881 PB2503_05212
SC S9 unassigned family S9 unassigned peptidases MER0222886 PB2503_06087
SC S9 unassigned family S9 unassigned peptidases MER0222890 PB2503_06617
SC S9 unassigned family S9 unassigned peptidases MER0222897 PB2503_08784
SC S9 unassigned family S9 unassigned peptidases MER0222901 PB2503_09879
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1019388 PB2503_09879
SC S33 S33.001 prolyl aminopeptidase MER0100501 PB2503_00987
SC S33 S33.990 haloalkane dehalogenase MER0214899
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0222884 PB2503_06057
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0222885 PB2503_06062
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0222899 PB2503_09779
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0213626
SC S33 unassigned family S33 unassigned peptidases MER0222889 PB2503_06557
SC S33 unassigned family S33 unassigned peptidases MER0222891 PB2503_06967
SC S33 unassigned family S33 unassigned peptidases MER0222892 PB2503_07499
SC S33 unassigned family S33 unassigned peptidases MER0222922 PB2503_13219
SE S11 unassigned family S11 unassigned peptidases MER0083256 PB2503_11124
SE S11 unassigned family S11 unassigned peptidases MER0083259
SE S12 S12.006 class C beta-lactamase MER0222925 PB2503_13554
SE S12 S12.950 esterase EstB MER0222905 PB2503_10374
SE S12 unassigned family S12 unassigned peptidases MER0222888 PB2503_06507
SE S12 unassigned family S12 unassigned peptidases MER0222902 PB2503_10024
SE S12 unassigned family S12 unassigned peptidases MER0222903 PB2503_10029
SE S12 unassigned family S12 unassigned peptidases MER0222924 PB2503_13309
SE S13 S13.002 D-Ala-D-Ala carboxypeptidase (Actinomadura-type) MER0139946 PB2503_00120
SF S24 S24.001 repressor LexA MER0143149 lexA PB2503_13279
SF S26 S26.001 signal peptidase I MER0062115 PB2503_08389
SF S26 S26.014 TraF peptidase MER0117092
SF S26 S26.014 TraF peptidase MER0122690
SF S26 S26.014 TraF peptidase MER0175844 PB2503_05627
SF S26 unassigned subfamily S26C unassigned peptidases MER0222868 PB2503_00677
SH S78 unassigned family S78 unassigned peptidases MER0061969
SJ S16 S16.001 Lon-A peptidase MER0060791
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0222873 PB2503_02777
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0222874 PB2503_02957
SK S14 S14.001 peptidase Clp (type 1) MER0060715 clpP PB2503_01152
SK S41 S41.004 C-terminal processing peptidase-3 MER0063008 PB2503_05162
SK S41 S41.012 Pep putative peptidase (Vibrio-type) MER0222870 PB2503_01492
SK S49 non-peptidase homologue subfamily S49A unassigned non-peptidase homologues MER0063486
SK S49 non-peptidase homologue subfamily S49C non-peptidase homologues MER1071605 PB2503_03302
SK S49 non-peptidase homologue subfamily S49C non-peptidase homologues MER1071495 PB2503_12749
SK S49 unassigned subfamily S49A unassigned peptidases MER1349350
SK S49 unassigned subfamily S49B unassigned peptidases MER0060713 PB2503_13019
SS S66 S66.001 murein tetrapeptidase LD-carboxypeptidase (Pseudomonas-type) MER0083264
ST S54 S54.004 AarA peptidase MER0222918 PB2503_12659

GENOME ANALYSIS: Comparison with 571 completely sequenced genomes from class Alphaproteobacteria
Family Comment
M13 significant presence (1 homologues)
M14 significant presence (1 homologues)
M28 significant presence (2 homologues)
M36 significant presence (1 homologues)
S13 significant presence (1 homologues)
S46 significant presence (1 homologues)
S66 significant presence (1 homologues)