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Photobacterium sp. SKA34

Taxonomy
Taxonomy database identifier: 121723
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Vibrionales
Family Vibrionaceae
Genus Photobacterium
Species sp. SKA34
Peptidase View peptidase sequences from Photobacterium sp. SKA34
Count of known and putative peptidases: 87, non-peptidase homologues 18
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 A08.001 signal peptidase II MER0064037 lspA SKA34_18559
AD A24 A24.001 type 4 prepilin peptidase 1 MER0064034 SKA34_22362
AE A31 A31.003 HycI peptidase MER0062567 SKA34_09573
AE A31 unassigned family A31 unassigned peptidases MER0122190 SKA34_13040
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0243983 SKA34_07229
CL C82 C82.A03 YnhG protein (Escherichia coli) MER0461957
CO C40 C40.004 spr peptidase MER0181002 SKA34_10403
CO C40 C40.004 spr peptidase MER0181087
CO C40 unassigned family C40 unassigned peptidases MER0118722 SKA34_12310
G- G5 unassigned family G5 unassigned peptidases MER0062217 SKA34_04345
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0084029 SKA34_13855
MA M3 M03.004 oligopeptidase A MER0084040 SKA34_17100
MA M4 M04.010 vimelysin MER0110034 SKA34_08938
MA M9 M09.004 VMC peptidase MER0139947 SKA34_08318
MA M32 unassigned family M32 unassigned peptidases MER0084025 SKA34_14030
MA M36 unassigned family M36 unassigned peptidases MER0107932 SKA34_08063
MA M41 M41.001 FtsH peptidase MER0105480 ftsH SKA34_18629
MA M48 M48.002 HtpX peptidase MER0118721 htpX SKA34_15250
MA M48 M48.023 BepA (Escherichia coli) MER0062218 SKA34_21052
MC M14 unassigned subfamily M14A unassigned peptidases MER0107604 SKA34_20317
MC M14 unassigned subfamily M14D unassigned peptidases MER0309071 SKA34_04325
MC M14 unassigned family M14 unassigned peptidases MER0084027 SKA34_10900
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER0180518
MD M74 unassigned family M74 unassigned peptidases MER0084044 mepA SKA34_19004
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0062565 SKA34_21710
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0062566 SKA34_21710
ME M16 unassigned subfamily M16A unassigned peptidases MER0084042 SKA34_02429
MF M17 M17.003 PepA aminopeptidase MER0084032 pepA SKA34_18177
MF M17 M17.004 PepB aminopeptidase MER0084045 SKA34_19239
MF M17 M17.004 PepB aminopeptidase MER0084046 SKA34_19244
MG M24 unassigned subfamily M24A unassigned peptidases MER0084033 SKA34_21364
MG M24 unassigned subfamily M24B unassigned peptidases MER0084037 SKA34_00400
MH M20 M20.003 peptidase T MER0084026 pepT SKA34_14085
MH M20 M20.007 Xaa-His dipeptidase MER0092173 SKA34_01722 SKA34_01722
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0369220 SKA34_20302
MH M20 unassigned subfamily M20A unassigned peptidases MER0845139 dapE
MH M20 unassigned subfamily M20B unassigned peptidases MER0092172 SKA34_04385
MH M42 non-peptidase homologue family M42 non-peptidase homologues MER0880957 SKA34_01722 SKA34_01722
MJ M19 non-peptidase homologue family M19 non-peptidase homologues MER0084030 SKA34_04495
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0871476 SKA34_10850
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0860024 hutI
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0873758 SKA34_07958
MM M50 M50.004 RseP peptidase MER0062563 SKA34_21324
MM M50 unassigned subfamily M50B unassigned peptidases MER0118886 SKA34_14820
MO M23 M23.011 YebA peptidase MER0125644 SKA34_02769
MO M23 M23.014 ShyA D,D-endopeptidase (Vibrio cholerae) MER0140045 SKA34_18294
MO M23 M23.014 ShyA D,D-endopeptidase (Vibrio cholerae) MER0180689 SKA34_07289
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0084028 SKA34_00997
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0477797
MO M23 unassigned subfamily M23B unassigned peptidases MER0126638 SKA34_18784
MS M75 M75.001 imelysin MER0109828 SKA34_15425
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0062564 SKA34_22694
MU M103 M103.UNW family M103 non-peptidase homologues MER0105675 SKA34_22684
MU M103 M103.UNW family M103 non-peptidase homologues MER0125468 SKA34_03990
MU M103 M103.UPW family M103 unassigned peptidases MER0116988 SKA34_03985
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0405594
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0327294
PA S1 S01.275 DegS peptidase MER0062450 SKA34_22589
PA S1 S01.B70 try-3 g.p. (Caenorhabditis elegans) MER0090654 SKA34_11250
PA S1 unassigned subfamily S1A unassigned peptidases MER0488509
PA S1 unassigned subfamily S1A unassigned peptidases MER0488510
PA S1 unassigned subfamily S1A unassigned peptidases MER0062338 SKA34_10635
PA S1 unassigned subfamily S1C unassigned peptidases MER0062449 SKA34_22584
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0136463 SKA34_19650
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0458762
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0458763 asnB
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0180721
PB C59 C59.001 penicillin V acylase precursor MER0142671 SKA34_03590
PB C59 unassigned family C59 unassigned peptidases MER0913862 SKA34_08198
PB C59 unassigned family C59 unassigned peptidases MER0330158 SKA34_08203
PB C69 C69.001 dipeptidase A MER0109660 SKA34_04435
PB C69 C69.001 dipeptidase A MER0084039 SKA34_15170
PB T1 T01.006 HslV component of HslUV peptidase MER0060871 hslV SKA34_00060
PB T2 unassigned family T2 unassigned peptidases MER0126639 SKA34_08158
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0107480 SKA34_00570
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0435987
PC C26 C26.957 GMP synthase MER0442394 guaA
PC C26 C26.960 TrpD protein (anthranilate synthase component II) MER0440670
PC C26 C26.964 CTP synthetase MER0448563
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0444978
PC C26 unassigned family C26 unassigned peptidases MER0441140
PC C26 unassigned family C26 unassigned peptidases MER0450017
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0896226 SKA34_09193
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0161815 SKA34_05255
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0161937 SKA34_05410
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0162063
PC S51 unassigned family S51 unassigned peptidases MER0064036 SKA34_20437
SB S8 S08.050 secreted peptidase A MER0062572 SKA34_08608
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER0982421 SKA34_01267
SB S8 unassigned subfamily S8A unassigned peptidases MER1285827
SC S9 S09.010 oligopeptidase B MER0062223 SKA34_05585
SC S9 S09.952 acyl-protein thioesterase 1 (Schizosaccharomyces pombe) MER0212936
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER1003131 SKA34_01437
SC S9 unassigned subfamily S9A unassigned peptidases MER0161875 SKA34_05370 SKA34_05370
SC S33 unassigned family S33 unassigned peptidases MER0084041 SKA34_13120
SC S33 unassigned family S33 unassigned peptidases MER0210035
SC S33 unassigned family S33 unassigned peptidases MER0209588
SC S33 unassigned family S33 unassigned peptidases MER0210725
SC S33 unassigned family S33 unassigned peptidases MER0215402
SC S33 unassigned family S33 unassigned peptidases MER0209909
SE S11 S11.002 murein-DD-endopeptidase MER0084035 SKA34_14190
SE S11 unassigned family S11 unassigned peptidases MER0084024 SKA34_14025
SE S11 unassigned family S11 unassigned peptidases MER0084034 SKA34_20882
SE S11 unassigned family S11 unassigned peptidases MER0949520 SKA34_03034
SE S11 unassigned family S11 unassigned peptidases MER0987304 SKA34_13605
SE S11 unassigned family S11 unassigned peptidases MER0084036 SKA34_09713
SE S13 S13.001 D-Ala-D-Ala peptidase C MER0100519 SKA34_18594
SF S24 S24.001 repressor LexA MER0139359 lexA SKA34_16675
SF S24 S24.003 UmuD protein MER0138718 SKA34_03705
SF S24 unassigned family S24 unassigned peptidases MER1045253 SKA34_16043
SF S26 S26.001 signal peptidase I MER0064035 SKA34_11540
SF S26 S26.001 signal peptidase I MER0064033 SKA34_21875
SJ S16 S16.001 Lon-A peptidase MER0062222 SKA34_19705
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0473326
SJ S16 S16.A10 ycbZ (Escherichia coli) MER0062216 SKA34_13910
SJ S16 unassigned family S16 unassigned peptidases MER0062224 SKA34_09103
SK S14 S14.001 peptidase Clp (type 1) MER0062221 clpP SKA34_19695
SK S41 S41.001 C-terminal processing peptidase-1 MER0062215 SKA34_13840
SK S41 non-peptidase homologue family S41 non-peptidase homologues MER0062219 SKA34_13835
SK S49 unassigned subfamily S49B unassigned peptidases MER0062568 SKA34_19920
SK S49 unassigned subfamily S49B unassigned peptidases MER0084038 SKA34_03409
SK S49 unassigned subfamily S49C unassigned peptidases MER1072832 SKA34_11285
SS S66 unassigned family S66 unassigned peptidases MER0141282 SKA34_14710
ST S54 unassigned family S54 unassigned peptidases MER1083061 SKA34_16700
ST S54 unassigned family S54 unassigned peptidases MER1083206 SKA34_19725
ST S54 unassigned family S54 unassigned peptidases MER1081687 SKA34_05265
U- U32 U32.002 collagenase (Helicobacter-type) MER0062569 SKA34_19014
U- U32 U32.A01 YhbV protein (Escherichia coli) MER0062570 SKA34_18689
U- U32 unassigned family U32 unassigned peptidases MER0062571 SKA34_18694
U- U32 unassigned family U32 unassigned peptidases MER0142672 SKA34_11835

GENOME ANALYSIS: Comparison with 9 completely sequenced genomes from genus Photobacterium
Family Comment
M9 significant decrease in homologues (1 homologues)
M15 significant decrease in homologues (1 homologues)
M20 significant decrease in homologues (5 homologues)
M23 significant decrease in homologues (6 homologues)
M24 significant decrease in homologues (2 homologues)
M42 significant decrease in homologues (1 homologues)
M74 significant decrease in homologues (1 homologues)
S1 significant decrease in homologues (6 homologues)
S14 significant decrease in homologues (1 homologues)
S49 significant decrease in homologues (3 homologues)
T2 significant decrease in homologues (1 homologues)

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