Shewanella benthica

Taxonomy
Taxonomy database identifier: 43661
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Alteromonadales
Genus Shewanella
Family Shewanellaceae
Species benthica
Peptidase View peptidase sequences from Shewanella benthica
Count of known and putative peptidases: 88, non-peptidase homologues 18
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 A08.001 signal peptidase II MER0140153 lspA KT99_03829
AD A24 A24.001 type 4 prepilin peptidase 1 MER0120307 KT99_07429
AD A24 A24.019 ComC peptidase MER0427075
AE A31 unassigned family A31 unassigned peptidases MER0141120 KT99_11143
CA C39 C39.005 colicin V processing peptidase MER0136475 KT99_05417
CA C93 unassigned family C93 unassigned peptidases MER0394849 KT99_18837
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0244098 KT99_14104
CL C82 C82.A03 YnhG protein (Escherichia coli) MER0463528 KT99_01257
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0361885
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0180521 KT99_13697
MA M1 M01.031 cold-active aminopeptidase (Colwellia psychrerythraea)-type peptidase MER0180319 KT99_04717
MA M1 non-peptidase homologue family M1 non-peptidase homologues MER0164588 KT99_07179
MA M1 unassigned family M1 unassigned peptidases MER0118909 KT99_12859
MA M2 unassigned family M2 unassigned peptidases MER0140052 KT99_11720
MA M3 M03.004 oligopeptidase A MER0141861 KT99_02947
MA M3 unassigned subfamily M3A unassigned peptidases MER0122240 KT99_10648
MA M3 unassigned subfamily M3A unassigned peptidases MER0137922 KT99_11008
MA M6 unassigned family M6 unassigned peptidases MER0126371 KT99_01871
MA M9 unassigned subfamily M9A unassigned peptidases MER0141024 KT99_16766
MA M9 unassigned subfamily M9A unassigned peptidases MER1202309
MA M9 unassigned subfamily M9A unassigned peptidases MER0124628 KT99_04712
MA M9 unassigned subfamily M9A unassigned peptidases MER0138888 KT99_19429
MA M12 unassigned family M12 unassigned peptidases MER0823491 KT99_10473
MA M13 unassigned family M13 unassigned peptidases MER0140319 KT99_20821
MA M13 unassigned family M13 unassigned peptidases MER0117016 KT99_07523
MA M32 non-peptidase homologue family M32 non-peptidase homologues MER0857600 KT99_01017
MA M41 M41.001 FtsH peptidase MER0118366 ftsH KT99_21409
MA M43 M43.008 Mername-AA293 peptidase MER0140242 KT99_06779
MA M43 unassigned subfamily M43A unassigned peptidases MER0117882 KT99_11999
MA M48 M48.002 HtpX peptidase MER0180596 KT99_10658
MA M61 unassigned family M61 unassigned peptidases MER0138644 KT99_04674
MA M90 unassigned family M90 unassigned peptidases MER0286887 KT99_16164
MC M14 non-peptidase homologue subfamily M14D non-peptidase homologues MER0835551 KT99_02812
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0468994
MC M14 unassigned subfamily M14D unassigned peptidases MER0309101 KT99_12499
MD M15 unassigned subfamily M15B unassigned peptidases MER0469552
MD M74 unassigned family M74 unassigned peptidases MER0313113 KT99_19274
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0470679 KT99_02487
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0179162 KT99_19924
ME M16 unassigned subfamily M16A unassigned peptidases MER0143961 KT99_09908
ME M16 unassigned subfamily M16B unassigned peptidases MER0178898 KT99_02492
ME M16 unassigned subfamily M16B unassigned peptidases MER0392772 KT99_17071
MF M17 M17.003 PepA aminopeptidase MER0144873 pepA KT99_20596
MF M17 M17.004 PepB aminopeptidase MER0180175 KT99_09204
MF M17 unassigned family M17 unassigned peptidases MER0180085 KT99_21304
MF M17 unassigned family M17 unassigned peptidases MER0142687 KT99_05517
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0318962 map KT99_05017
MG M24 M24.003 Xaa-Pro dipeptidase (bacteria-type) MER0142600 pepQ KT99_03357
MG M24 unassigned subfamily M24B unassigned peptidases MER0165321 KT99_01042
MG M24 unassigned subfamily M24B unassigned peptidases MER0165376 KT99_01052
MG M24 unassigned subfamily M24B unassigned peptidases MER0139569 KT99_14385
MH M20 M20.007 Xaa-His dipeptidase MER0139760 KT99_21299
MH M20 M20.A08 YgeY protein (Escherichia coli) MER0473806
MH M20 non-peptidase homologue subfamily M20D non-peptidase homologues MER0374172 KT99_04767
MH M20 unassigned subfamily M20A unassigned peptidases MER0165577 KT99_07249
MH M20 unassigned subfamily M20A unassigned peptidases MER0475011
MH M28 non-peptidase homologue subfamily M28E non-peptidase homologues MER0322381 KT99_08158
MH M28 unassigned subfamily M28D unassigned peptidases MER0120471 KT99_03799
MH M28 unassigned subfamily M28E unassigned peptidases MER0125957 KT99_14054
MH M28 unassigned family M28 unassigned peptidases MER0120083 KT99_10468
MJ M19 non-peptidase homologue family M19 non-peptidase homologues MER0341749 KT99_06844
MJ M38 M38.982 urease MER0874128 KT99_03387
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0865451 hutI
MM M50 unassigned subfamily M50B unassigned peptidases MER0896235 KT99_05057
MM M50 unassigned subfamily M50B unassigned peptidases MER0120549 KT99_19584
MO M23 M23.011 YebA peptidase MER0180379 KT99_09688
MO M23 M23.014 ShyA D,D-endopeptidase (Vibrio cholerae) MER0158973 KT99_01329
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0478337
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0478285
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0477521
MO M23 unassigned subfamily M23B unassigned peptidases MER0165727 KT99_18165
MP M67 unassigned subfamily M67B unassigned peptidases MER0155636 KT99_12009
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0122944 KT99_07808
MU M103 M103.UNW family M103 non-peptidase homologues MER0123762 KT99_07843
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0327266
PA S1 S01.275 DegS peptidase MER0408517
PA S1 unassigned subfamily S1C unassigned peptidases MER0206078 KT99_08503
PA S46 S46.003 dipeptidyl-peptidase BII (Pseudoxanthomonas mexicana) MER0136575 KT99_19784
PA S46 S46.003 dipeptidyl-peptidase BII (Pseudoxanthomonas mexicana) MER0125033 KT99_08593
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0142248 KT99_10033
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0180459
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0458871 asnB
PB S45 S45.003 cephalosporin C acylase precursor MER1064304 KT99_04792
PB S45 S45.004 acyl-homoserine lactone acylase MER1063578 KT99_20239
PB S45 non-peptidase homologue family S45 non-peptidase homologues MER1064379 KT99_20234
PB S45 non-peptidase homologue family S45 non-peptidase homologues MER1063948 KT99_04802
PB T1 T01.006 HslV component of HslUV peptidase MER0138818 hslV KT99_07633
PB T2 unassigned family T2 unassigned peptidases MER1094682 KT99_11093
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0136378 KT99_09528
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0436047
PC C26 C26.960 TrpD protein (anthranilate synthase component II) MER0439422
PC C26 C26.961 PuuD protein MER0449075
PC C26 C26.964 CTP synthetase MER0449740
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0444666
PC C26 C26.A07 At1g63660 (Arabidopsis thaliana) MER0443341 guaA
PC C26 unassigned family C26 unassigned peptidases MER0441360
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0178845
SB S8 unassigned subfamily S8A unassigned peptidases MER0985460 KT99_18207
SB S8 unassigned subfamily S8A unassigned peptidases MER0191945 KT99_05927
SB S8 unassigned subfamily S8A unassigned peptidases MER0164201 KT99_04474
SC S9 S09.009 dipeptidyl-peptidase 4 (bacteria-type 1) MER0140823 KT99_05902 KT99_05902
SC S9 S09.010 oligopeptidase B MER0123379 KT99_02146
SC S9 S09.012 dipeptidyl-peptidase 5 MER0143864 KT99_12329
SC S9 S09.071 trilobed protease MER0122241 KT99_10173
SC S9 S09.074 tyrosyl aminopeptidase (Raphanus-type) MER0137528 KT99_05497
SC S9 S09.A40 YqiA protein (Escherichi coli) MER0215510 KT99_08703
SC S9 S09.A77 dpf-6 g.p. (Caenorhabditis elegans) MER0139177 KT99_18507 KT99_18507
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0210187
SC S9 unassigned subfamily S9A unassigned peptidases MER0123624 KT99_13972
SC S9 unassigned subfamily S9B unassigned peptidases MER0124808 KT99_08843 KT99_08843
SC S9 unassigned subfamily S9B unassigned peptidases MER0999493 KT99_21284
SC S9 unassigned subfamily S9B unassigned peptidases MER1299326
SC S9 unassigned family S9 unassigned peptidases MER0123144 KT99_04639
SC S9 unassigned family S9 unassigned peptidases MER0123380 KT99_18307
SC S9 unassigned family S9 unassigned peptidases MER0123907 KT99_17975
SC S9 unassigned family S9 unassigned peptidases MER0209245 KT99_05572
SC S33 S33.001 prolyl aminopeptidase MER0118537 KT99_17715
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0208686
SC S33 unassigned family S33 unassigned peptidases MER0213167
SC S33 unassigned family S33 unassigned peptidases MER0209761
SE S11 unassigned family S11 unassigned peptidases MER0125663 KT99_20953
SE S12 unassigned family S12 unassigned peptidases MER1028507 KT99_20786
SE S12 unassigned family S12 unassigned peptidases MER0119296 KT99_13747
SE S13 S13.001 D-Ala-D-Ala peptidase C MER0137042 KT99_12619
SF S24 S24.001 repressor LexA MER0124736 lexA KT99_02702
SF S24 non-peptidase homologue family S24 non-peptidase homologues MER0137923 KT99_13149
SF S26 S26.001 signal peptidase I MER0117118 KT99_03529
SJ S16 S16.001 Lon-A peptidase MER0144609 KT99_00600
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0472484
SJ S16 S16.A10 ycbZ (Escherichia coli) MER0165489 KT99_13627
SJ S16 unassigned family S16 unassigned peptidases MER0471869
SK S14 S14.001 peptidase Clp (type 1) MER0117422 clpP KT99_00590
SK S41 S41.001 C-terminal processing peptidase-1 MER0123142 KT99_13702
SK S41 S41.001 C-terminal processing peptidase-1 MER0123143 KT99_13702
SK S41 S41.004 C-terminal processing peptidase-3 MER0125664 KT99_01691
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER1062411 KT99_16996
SK S49 unassigned subfamily S49B unassigned peptidases MER0140318 KT99_10253
SK S49 unassigned subfamily S49B unassigned peptidases MER0179016 KT99_12519
SK S49 unassigned subfamily S49C unassigned peptidases MER1073223 KT99_09408
ST S54 non-peptidase homologue family S54 non-peptidase homologues MER1083229 KT99_11670
ST S54 unassigned family S54 unassigned peptidases MER1075209 KT99_03167
U- U32 U32.002 collagenase (Helicobacter-type) MER0137237 KT99_03994
U- U32 unassigned family U32 unassigned peptidases MER0144476 KT99_05337
U- U32 unassigned family U32 unassigned peptidases MER0122945 KT99_09968
U- U32 unassigned family U32 unassigned peptidases MER0122334 KT99_03944

GENOME ANALYSIS: Comparison with 24 completely sequenced genomes from family Shewanellaceae
Family Comment
S33 significant decrease in homologues (4 homologues)
S45 lineage specific expansion (4 homologues)