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MEROPS SUBMISSIONS

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information

Pedobacter heparinus

Taxonomy
Taxonomy database identifier: 984
Superkingdom Bacteria
Phylum Bacteroidetes
Class Sphingobacteria
Order Sphingobacteriales
Family Sphingobacteriaceae
Genus Pedobacter
Species heparinus
Peptidase View peptidase sequences from Pedobacter heparinus
Count of known and putative peptidases: 127, non-peptidase homologues 66
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0129310 lspA Phep_0418
CA C1 unassigned subfamily C1A unassigned peptidases MER0129372 Phep_3630
CA C39 C39.001 bacteriocin-processing peptidase MER0302291 Phep_0558
CA C39 C39.001 bacteriocin-processing peptidase MER0129355 Phep_3347
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0243969 Phep_0696
CO C40 C40.004 spr peptidase MER0129411
CO C40 C40.004 spr peptidase MER0129276 Phep_0170
CO C40 C40.009 NLP/P60 (Nostoc punctiforme)-like putative peptidase MER0129458 Phep_3201
CO C40 unassigned family C40 unassigned peptidases MER0129359
G- G5 G05.A04 At3g26085 (Arabidopsis thaliana) MER0129482
MA M1 M01.031 cold-active aminopeptidase (Colwellia psychrerythraea)-type peptidase MER0129494
MA M1 unassigned family M1 unassigned peptidases MER0129293
MA M1 unassigned family M1 unassigned peptidases MER0129316
MA M1 unassigned family M1 unassigned peptidases MER0129357
MA M1 unassigned family M1 unassigned peptidases MER0129364
MA M1 unassigned family M1 unassigned peptidases MER0129410 Phep_1889
MA M3 unassigned subfamily M3C unassigned peptidases MER0129402
MA M13 unassigned family M13 unassigned peptidases MER0129368 Phep_3687
MA M13 unassigned family M13 unassigned peptidases MER0129439 Phep_1239
MA M41 M41.007 Afg3-like protein 2 MER0129483
MA M48 unassigned subfamily M48C unassigned peptidases MER0129387
MA M56 unassigned family M56 unassigned peptidases MER0129279
MA M56 unassigned family M56 unassigned peptidases MER0129417
MA M61 unassigned family M61 unassigned peptidases MER0129362 Phep_3734
MA M90 unassigned family M90 unassigned peptidases MER0286978 Phep_0178
MA M97 unassigned family M97 unassigned peptidases MER0486825 Phep_0727
MC M14 non-peptidase homologue subfamily M14A non-peptidase homologues MER0129347
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0835550 Phep_0255
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0129475
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0469336 Phep_3110
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0129259
MD M15 unassigned subfamily M15D unassigned peptidases MER0129375 Phep_4285
ME M16 non-peptidase homologue subfamily M16A non-peptidase homologues MER0129288 Phep_3516
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0129431
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0129433
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0129289
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0129312
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0129432
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0129484
ME M16 unassigned subfamily M16A unassigned peptidases MER0129485 Phep_2676
ME M16 unassigned subfamily M16B unassigned peptidases MER0129255
ME M16 unassigned subfamily M16B unassigned peptidases MER0129256
ME M16 unassigned subfamily M16B unassigned peptidases MER0129437
ME M16 unassigned subfamily M16B unassigned peptidases MER0129311 Phep_0438
MG M24 unassigned subfamily M24A unassigned peptidases MER0129333
MG M24 unassigned subfamily M24A unassigned peptidases MER0129382
MG M24 unassigned subfamily M24B unassigned peptidases MER0129326
MH M20 unassigned subfamily M20B unassigned peptidases MER0129264
MH M20 unassigned subfamily M20C unassigned peptidases MER0129442 Phep_2364
MH M20 unassigned family M20D unassigned peptidases MER0129283 Phep_0273
MH M20 unassigned subfamily M20F unassigned peptidases MER0129315
MH M28 unassigned subfamily M28A unassigned peptidases MER0129322 Phep_4102
MH M28 unassigned subfamily M28B unassigned peptidases MER0190115 Phep_3822
MH M28 unassigned subfamily M28F unassigned peptidases MER0129262 Phep_0092
MH M28 unassigned subfamily M28F unassigned peptidases MER0129434 Phep_1583
MH M28 unassigned subfamily M28F unassigned peptidases MER0129378 Phep_3007
MH M42 unassigned family M42 unassigned peptidases MER0129334
MJ M19 unassigned family M19 unassigned peptidases MER0189227 Phep_2434
MJ M38 M38.978 dihydropyrimidinase related protein-5 MER0129469
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0129271
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0129374
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0129407
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0129425
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0129457
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0129487
MJ M38 unassigned family M38 unassigned peptidases MER0129300
MJ M38 unassigned family M38 unassigned peptidases MER0129308
MJ M38 unassigned family M38 unassigned peptidases MER0129351
MM M50 unassigned family M50 unassigned peptidases MER0129426
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0129332
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0129443
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0479990 Phep_3838
MO M23 unassigned family M23 unassigned peptidases MER0129303
MT M81 unassigned family M81 unassigned peptidases MER0223205 Phep_3571
PA S1 unassigned subfamily S1C unassigned peptidases MER0129278 Phep_0209
PA S1 unassigned subfamily S1C unassigned peptidases MER0129498 Phep_2930
PA S46 S46.002 dipeptidyl-peptidase 11 (Porphyromonas gingivalis-type) MER0129379 Phep_2984
PA S46 S46.003 dipeptidyl-peptidase BII (Pseudoxanthomonas mexicana) MER0129448 Phep_2038
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0129444
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0129273
PB C44 unassigned family C44 unassigned peptidases MER0129400
PB S45 S45.003 cephalosporin C acylase precursor MER0129358 Phep_3311
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0129363 Phep_3731
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0438840 Phep_4169
PC C26 C26.957 GMP synthase MER0129399
PC C26 C26.964 CTP synthetase MER0129349
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0129503 hisH Phep_3195
PC C26 unassigned family C26 unassigned peptidases MER0129324
PC C26 unassigned family C26 unassigned peptidases MER0129335
PC C26 unassigned family C26 unassigned peptidases MER0129440
PC C26 unassigned family C26 unassigned peptidases MER0129441
PC C56 C56.001 PfpI peptidase MER0129339 Phep_2626
PC C56 C56.972 phosphoribosylformylglycinamidine synthase MER0129380
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0129305
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0129356
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0129360
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0129386
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0129389
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0129467
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0129468
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0129480
PE P1 unassigned family P01 unassigned peptidases MER0129464 Phep_2046
SB S8 S08.026 nasp peptidase MER0129476 Phep_3598
SB S8 unassigned subfamily S8A unassigned peptidases MER0129361 Phep_3748
SB S8 unassigned subfamily S8A unassigned peptidases MER0129319 Phep_1319
SC S9 S09.017 prolyl tripeptidyl peptidase MER0129438 Phep_1241 Phep_1241
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER1002740 Phep_3711
SC S9 non-peptidase homologue subfamily S9C non-peptidase homologues MER0129309 Phep_0365
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0129406
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0129423
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0129428
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0129460
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0129491
SC S9 unassigned subfamily S9A unassigned peptidases MER0129501 Phep_2458
SC S9 unassigned subfamily S9B unassigned peptidases MER0129461 Phep_2346
SC S9 unassigned subfamily S9B unassigned peptidases MER0129452 Phep_2549
SC S9 unassigned subfamily S9C unassigned peptidases MER0129348 Phep_2588
SC S9 unassigned family S9 unassigned peptidases MER0129261
SC S9 unassigned family S9 unassigned peptidases MER0129290
SC S9 unassigned family S9 unassigned peptidases MER0129294
SC S9 unassigned family S9 unassigned peptidases MER0129304
SC S9 unassigned family S9 unassigned peptidases MER0129307
SC S9 unassigned family S9 unassigned peptidases MER0129352
SC S9 unassigned family S9 unassigned peptidases MER0129370
SC S9 unassigned family S9 unassigned peptidases MER0129391
SC S9 unassigned family S9 unassigned peptidases MER0129466
SC S9 unassigned family S9 unassigned peptidases MER0129486
SC S9 unassigned family S9 unassigned peptidases MER0129492
SC S9 unassigned family S9 unassigned peptidases MER0215353 Phep_1505
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1024008 Phep_2346
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1023078 Phep_3166
SC S15 unassigned family S15 unassigned peptidases MER0129365
SC S15 unassigned family S15 unassigned peptidases MER0129435
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0129497
SC S33 unassigned family S33 unassigned peptidases MER0129277
SC S33 unassigned family S33 unassigned peptidases MER0129401
SC S33 unassigned family S33 unassigned peptidases MER0129414
SC S33 unassigned family S33 unassigned peptidases MER0129445
SC S33 unassigned family S33 unassigned peptidases MER0129456
SC S33 unassigned family S33 unassigned peptidases MER0129465
SC S33 unassigned family S33 unassigned peptidases MER0129495
SE S11 non-peptidase homologue family S11 non-peptidase homologues MER0982573 Phep_2343
SE S11 unassigned family S11 unassigned peptidases MER0129496
SE S12 unassigned family S12 unassigned peptidases MER0129447
SE S12 unassigned family S12 unassigned peptidases MER0129462
SE S12 unassigned family S12 unassigned peptidases MER0129490
SE S12 unassigned family S12 unassigned peptidases MER0129274 Phep_0159
SE S12 unassigned family S12 unassigned peptidases MER0129314 Phep_0479
SE S12 unassigned family S12 unassigned peptidases MER0129403 Phep_0971
SE S12 unassigned family S12 unassigned peptidases MER0421951 Phep_2098
SE S12 unassigned family S12 unassigned peptidases MER0129446 Phep_2113
SE S12 unassigned family S12 unassigned peptidases MER0129420 Phep_2736
SE S12 unassigned family S12 unassigned peptidases MER0129381 Phep_2968
SE S12 unassigned family S12 unassigned peptidases MER0129474 Phep_3062
SE S13 unassigned family S13 unassigned peptidases MER0129369 Phep_3655
SE S13 unassigned family S13 unassigned peptidases MER0129376 Phep_4287
SF S26 unassigned subfamily S26A unassigned peptidases MER0129287
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0129272 Phep_0125
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0129258
SJ S16 unassigned family S16 unassigned peptidases MER0129388 lon Phep_1193
SK S14 S14.001 peptidase Clp (type 1) MER0129471
SK S14 S14.001 peptidase Clp (type 1) MER0129479
SK S41 S41.001 C-terminal processing peptidase-1 MER0129275 Phep_0166
SK S41 S41.004 C-terminal processing peptidase-3 MER0129430 Phep_3779
SK S41 S41.012 Pep putative peptidase (Vibrio-type) MER0129377
SK S41 unassigned subfamily S41A unassigned peptidases MER0129320 Phep_4121
SK S49 unassigned family S49 unassigned peptidases MER0129472 Phep_3074
SS S66 unassigned family S66 unassigned peptidases MER0129260 Phep_0082
SS S66 unassigned family S66 unassigned peptidases MER0129404 Phep_2200
ST S54 S54.025 At5g25752 rhomboid peptidase MER0129263
ST S54 S54.025 At5g25752 rhomboid peptidase MER0129454
ST S54 unassigned family S54 unassigned peptidases MER0129325 Phep_4044
ST S54 unassigned family S54 unassigned peptidases MER0129455

GENOME ANALYSIS: Comparison with 17 completely sequenced genomes from family Sphingobacteriaceae
Family Comment
C26 lineage specific expansion (8 homologues)
C39 significant decrease in homologues (2 homologues)
C56 lineage specific expansion (10 homologues)
M3 significant decrease in homologues (1 homologues)
M16 lineage specific expansion (12 homologues)
M48 significant decrease in homologues (1 homologues)
M81 significant presence (1 homologues)
P1 significant presence (1 homologues)
S9 lineage specific expansion (24 homologues)
S33 lineage specific expansion (8 homologues)

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Page created 8-September-2023

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