Planctopirus limnophila

Taxonomy
Taxonomy database identifier: 120
Superkingdom Bacteria
Phylum Planctomycetes
Class Planctomycetacia
Order Planctomycetales
Family Planctomycetaceae
Genus Planctomyces
Species limnophilus
Peptidase View peptidase sequences from Planctopirus limnophila
Count of known and putative peptidases: 128, non-peptidase homologues 62
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0130330
AD A24 A24.019 ComC peptidase MER0130274
AD A24 A24.A01 PppA protein (Escherichia coli) MER0333032 Plim_1574
AD A24 non-peptidase homologue family A24 non-peptidase homologues MER0130314
AD A24 unassigned subfamily A24A unassigned peptidases MER0130356
AD A24 unassigned subfamily A24A unassigned peptidases MER0130297 Plim_1841
AD A24 unassigned family A24 unassigned peptidases MER0130298 Plim_1819
CA C1 unassigned subfamily C1A unassigned peptidases MER0130214 Plim_3607
CA C2 non-peptidase homologue subfamily C2A non-peptidase homologues MER0707260 Plim_0619
CD C14 unassigned subfamily C14B unassigned peptidases MER0130242
CL C82 unassigned subfamily C82A unassigned peptidases MER0130195 Plim_0123
G- G5 unassigned family G5 unassigned peptidases MER0940166 Plim_3105
G- G5 unassigned family G5 unassigned peptidases MER0130230
G- G5 unassigned family G5 unassigned peptidases MER0130278
G- G5 unassigned family G5 unassigned peptidases MER0130357
MA M1 unassigned family M1 unassigned peptidases MER0130302
MA M3 M03.A01 TOP1 peptidase (Arabidopsis thaliana) MER0130211 Plim_3689
MA M3 M03.A08 BSSC8_09230 g.p. (Bacillus subtilis) MER0130292 Plim_1955
MA M8 unassigned family M8 unassigned peptidases MER0130179
MA M32 unassigned family M32 unassigned peptidases MER0130363 Plim_0595
MA M41 unassigned family M41 unassigned peptidases MER0130196
MA M41 unassigned family M41 unassigned peptidases MER0130311
MA M41 unassigned family M41 unassigned peptidases MER0130336
MA M48 unassigned subfamily M48C unassigned peptidases MER0130241
MA M56 unassigned family M56 unassigned peptidases MER0130346
MA M61 non-peptidase homologue family M61 non-peptidase homologues MER0901040 Plim_1811
MA M90 unassigned family M90 unassigned peptidases MER0286942 Plim_1447
MA M98 unassigned family M98 unassigned peptidases MER0261196 Plim_2078
MC M14 non-peptidase homologue subfamily M14A non-peptidase homologues MER0130192 Plim_0192
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0835924 Plim_0782
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0130187
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0130190
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0130264
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0130265
ME M16 unassigned subfamily M16B unassigned peptidases MER0130263
ME M16 unassigned subfamily M16B unassigned peptidases MER0130189 Plim_0240
MF M17 unassigned family M17 unassigned peptidases MER0130202 pepA Plim_3886
MG M24 non-peptidase homologue subfamily M24B non-peptidase homologues MER0130310
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0130227
MG M24 unassigned subfamily M24A unassigned peptidases MER0130267
MG M24 unassigned subfamily M24A unassigned peptidases MER0130303 map Plim_1766
MH M20 unassigned subfamily M20B unassigned peptidases MER0130207
MH M20 unassigned subfamily M20B unassigned peptidases MER0130319 Plim_1507
MH M20 unassigned subfamily M20F unassigned peptidases MER0130354
MH M20 unassigned family M20 unassigned peptidases MER0130199
MH M28 unassigned subfamily M28E unassigned peptidases MER1249690
MH M28 unassigned subfamily M28F unassigned peptidases MER0130201 Plim_3899
MH M28 unassigned family M28 unassigned peptidases MER0130353
MH M42 unassigned family M42 unassigned peptidases MER0130329 Plim_1376
MJ M19 unassigned family M19 unassigned peptidases MER0130266 Plim_2477
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0130188
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0130229
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0130239
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0130275
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0130286
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0130287
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0130288
MM M50 unassigned subfamily M50B unassigned peptidases MER0130285
MM M50 unassigned subfamily M50B unassigned peptidases MER0130318
MM M50 unassigned family M50 unassigned peptidases MER0130184
MM M50 unassigned family M50 unassigned peptidases MER0130221
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0326993
PA S1 S01.472 Deg1 chloroplast peptidase MER0130291 Plim_2015
PA S1 non-peptidase homologue subfamily S1B non-peptidase homologues MER0130300
PA S1 non-peptidase homologue subfamily S1C non-peptidase homologues MER0966862 Plim_0166
PA S1 non-peptidase homologue subfamily S1C non-peptidase homologues MER0130299
PA S1 unassigned subfamily S1B unassigned peptidases MER0130206
PA S1 unassigned subfamily S1C unassigned peptidases MER0130213 Plim_3620 Plim_3620
PA S1 unassigned subfamily S1C unassigned peptidases MER0130209 Plim_3737
PA S1 unassigned subfamily S1C unassigned peptidases MER0130256
PA S1 unassigned subfamily S1C unassigned peptidases MER0130273
PA S1 unassigned subfamily S1C unassigned peptidases MER0130334
PA S1 unassigned subfamily S1C unassigned peptidases MER0130348
PA S1 unassigned subfamily S1C unassigned peptidases MER0130328 Plim_1379
PA S1 unassigned subfamily S1C unassigned peptidases MER0130301 Plim_1809
PA S1 unassigned subfamily S1C unassigned peptidases MER0130245 Plim_2772
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0130253
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0455611 Plim_1264
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0130248
PB C44 C44.A08 glutamine-fructose-6-phosphate transaminase precursor (Dictyostelium discoideum) MER0130331
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0130219
PB C59 C59.001 penicillin V acylase precursor MER0130361 Plim_0690
PB C59 unassigned family C59 unassigned peptidases MER0411047 Plim_1884
PB T2 unassigned family T2 unassigned peptidases MER0130347 Plim_1012
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0130228 Plim_3208
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0130198
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0130289
PC C26 C26.957 GMP synthase MER0130193
PC C26 C26.964 CTP synthetase MER0130306
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0130355
PC C26 unassigned family C26 unassigned peptidases MER0130290
PC C26 unassigned family C26 unassigned peptidases MER0130284 hisH Plim_2081
PC C56 C56.A06 DDB_G0276405 (Dictyostelium discoideum) MER0130186
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0130203
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0130317 Plim_1524
PC C56 unassigned family C56 unassigned peptidases MER0130308
PC S51 S51.003 cyanophycinase MER0130379
PC S51 unassigned family S51 unassigned peptidases MER0130238
PC S51 unassigned family S51 unassigned peptidases MER0130243
PC S51 unassigned family S51 unassigned peptidases MER0130244
PE T5 unassigned family T5 unassigned peptidases MER0130312
SB S8 unassigned subfamily S8A unassigned peptidases MER0130283
SB S8 unassigned subfamily S8A unassigned peptidases MER0130345
SC S9 S09.021 glutamyl endopeptidase C MER0130350 Plim_0915
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER0130200
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0130205
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0130237
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0130277
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0130281
SC S9 unassigned subfamily S9A unassigned peptidases MER0130365 Plim_0588
SC S9 unassigned subfamily S9B unassigned peptidases MER0130258
SC S9 unassigned subfamily S9B unassigned peptidases MER0130233
SC S9 unassigned subfamily S9C unassigned peptidases MER0130259
SC S9 unassigned subfamily S9C unassigned peptidases MER0130268
SC S9 unassigned family S9 unassigned peptidases MER0130191
SC S9 unassigned family S9 unassigned peptidases MER0130208
SC S9 unassigned family S9 unassigned peptidases MER0130218
SC S9 unassigned family S9 unassigned peptidases MER0130220
SC S9 unassigned family S9 unassigned peptidases MER0130236
SC S9 unassigned family S9 unassigned peptidases MER0130240
SC S9 unassigned family S9 unassigned peptidases MER0130246
SC S9 unassigned family S9 unassigned peptidases MER0130252
SC S9 unassigned family S9 unassigned peptidases MER0130255
SC S9 unassigned family S9 unassigned peptidases MER0130260
SC S9 unassigned family S9 unassigned peptidases MER0130270
SC S9 unassigned family S9 unassigned peptidases MER0130280
SC S9 unassigned family S9 unassigned peptidases MER0130294
SC S9 unassigned family S9 unassigned peptidases MER0130295
SC S9 unassigned family S9 unassigned peptidases MER0130305
SC S9 unassigned family S9 unassigned peptidases MER0130315
SC S9 unassigned family S9 unassigned peptidases MER0130321
SC S9 unassigned family S9 unassigned peptidases MER0130351
SC S9 unassigned family S9 unassigned peptidases MER0130360
SC S9 unassigned family S9 unassigned peptidases MER0130364
SC S9 unassigned family S9 unassigned peptidases MER0489374 Plim_2589
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1025343 Plim_3438
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0130249
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0130251
SC S33 unassigned family S33 unassigned peptidases MER0130257
SC S33 unassigned family S33 unassigned peptidases MER0130309
SC S33 unassigned family S33 unassigned peptidases MER0130324
SC S33 unassigned family S33 unassigned peptidases MER0130332
SC S33 unassigned family S33 unassigned peptidases MER0130343
SC S33 unassigned family S33 unassigned peptidases MER0130352
SE S12 S12.006 class C beta-lactamase MER0130231 Plim_3141
SE S12 unassigned family S12 unassigned peptidases MER0130247
SE S12 unassigned family S12 unassigned peptidases MER0130316
SE S12 unassigned family S12 unassigned peptidases MER0130279 Plim_2171
SE S12 unassigned family S12 unassigned peptidases MER0130226 Plim_3257
SF S24 S24.001 repressor LexA MER0130276
SF S26 unassigned subfamily S26A unassigned peptidases MER0130344
SF S26 unassigned subfamily S26A unassigned peptidases MER0247008 Plim_0434
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0130194
SK S14 S14.001 peptidase Clp (type 1) MER0130223
SK S14 non-peptidase homologue family S14 non-peptidase homologues MER0130380 Plim_4252
SK S14 unassigned family S14 unassigned peptidases MER0130224 clpP Plim_3337
SK S41 S41.001 C-terminal processing peptidase-1 MER0130341 Plim_1152
SK S41 S41.004 C-terminal processing peptidase-3 MER0130261 Plim_2514
SK S41 unassigned subfamily S41A unassigned peptidases MER1348798
SK S41 unassigned subfamily S41A unassigned peptidases MER0130362 Plim_0662
SK S41 unassigned subfamily S41A unassigned peptidases MER0130215 Plim_3471
SK S49 non-peptidase homologue subfamily S49A unassigned non-peptidase homologues MER0130282
SK S49 non-peptidase homologue subfamily S49B non-peptidase homologues MER1071416 Plim_4252
SK S49 unassigned subfamily S49B unassigned peptidases MER0130359
SK S49 unassigned subfamily S49B unassigned peptidases MER0130325 Plim_1402
ST S54 S54.025 At5g25752 rhomboid peptidase MER0130313
ST S54 S54.028 rhomboid peptidase (Pseudomonas sp.) MER0130327
ST S54 unassigned family S54 unassigned peptidases MER0130225
ST S54 unassigned family S54 unassigned peptidases MER0130293
U- U32 unassigned family U32 unassigned peptidases MER0130234
U- U32 unassigned family U32 unassigned peptidases MER0130235

GENOME ANALYSIS: Comparison with 11 completely sequenced genomes from order Planctomycetales
Family Comment
A24 lineage specific expansion (6 homologues)
C1 significant presence (1 homologues)
C2 significant presence (1 homologues)
C14 significant decrease in homologues (1 homologues)
M8 significant presence (1 homologues)
M24 lineage specific expansion (4 homologues)
M38 lineage specific expansion (7 homologues)
M61 significant presence (1 homologues)
M98 significant presence (1 homologues)
S9 lineage specific expansion (32 homologues)
S15 significant presence (1 homologues)
S33 lineage specific expansion (8 homologues)
S51 lineage specific expansion (4 homologues)