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Verrucomicrobiae bacterium DG1235

Taxonomy
Taxonomy database identifier: 382464
Superkingdom Bacteria
Phylum Verrucomicrobia
Class Verrucomicrobiae
Order Verrucomicrobiales
Common Name Verrucomicrobiae bacterium DG1235
Peptidase View peptidase sequences from Verrucomicrobiae bacterium DG1235
Count of known and putative peptidases: 55, non-peptidase homologues 27
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0232452 lspA VDG1235_3877
AD A24 A24.019 ComC peptidase MER0136822 VDG1235_1916
AE A31 unassigned family A31 unassigned peptidases MER0141753 VDG1235_4258
CA C1 unassigned subfamily C1A unassigned peptidases MER0702486 VDG1235_2630
CD C14 unassigned subfamily C14B unassigned peptidases MER0241368
CF C15 non-peptidase homologue family C15 non-peptidase homologues MER0140472 VDG1235_4763
CL C82 unassigned subfamily C82A unassigned peptidases MER0462197
G- G5 unassigned family G5 unassigned peptidases MER0911512 VDG1235_3243
G- G5 unassigned family G5 unassigned peptidases MER0938480 VDG1235_4724
MA M3 unassigned subfamily M3A unassigned peptidases MER0138690 VDG1235_1559
MA M3 unassigned subfamily M3A unassigned peptidases MER1186431
MA M32 unassigned family M32 unassigned peptidases MER0136338 VDG1235_2459
MA M41 unassigned family M41 unassigned peptidases MER0362595 ftsH VDG1235_3233
MA M48 M48.019 GSU1437 putative peptidase MER0886692 VDG1235_262
MA M48 unassigned subfamily M48A unassigned peptidases MER0143617 VDG1235_1464
MA M54 unassigned family M54 unassigned peptidases MER0137575 VDG1235_987
MA M56 unassigned family M56 unassigned peptidases MER0934480 VDG1235_3112
MA M56 unassigned family M56 unassigned peptidases MER0899529 VDG1235_4758
MA M61 unassigned family M61 unassigned peptidases MER0138519 VDG1235_2240
MA M61 unassigned family M61 unassigned peptidases MER0179769 VDG1235_3375
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0140090 VDG1235_345
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0179759 VDG1235_2971
ME M16 unassigned subfamily M16B unassigned peptidases MER0140089 VDG1235_345
ME M16 unassigned subfamily M16B unassigned peptidases MER0179757 VDG1235_2686
ME M16 unassigned subfamily M16B unassigned peptidases MER0179763 VDG1235_3179
ME M16 unassigned subfamily M16B unassigned peptidases MER0164289 VDG1235_4680
ME M16 unassigned family M16 unassigned peptidases MER0391207 VDG1235_2570
MG M24 unassigned subfamily M24A unassigned peptidases MER0179773 VDG1235_3578
MG M24 unassigned subfamily M24B unassigned peptidases MER0178220 VDG1235_567
MH M20 non-peptidase homologue subfamily M20F non-peptidase homologues MER0854840 VDG1235_4757
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0845487 VDG1235_4606
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0302765
MH M20 unassigned subfamily M20F unassigned peptidases MER0854091 VDG1235_3218
MH M20 unassigned family M20 unassigned peptidases MER0144100 VDG1235_2106
MH M28 non-peptidase homologue family M28 non-peptidase homologues MER0141545 VDG1235_527
MH M28 unassigned subfamily M28F unassigned peptidases MER0179755 VDG1235_2684
MH M42 unassigned family M42 unassigned peptidases MER0179761 VDG1235_3044
MJ M19 unassigned family M19 unassigned peptidases MER0179741 VDG1235_2266
MJ M38 M38.982 urease MER0865876 ureC
MM M50 unassigned family M50 unassigned peptidases MER0892528 VDG1235_3517
MQ M29 unassigned family M29 unassigned peptidases MER0143618 VDG1235_4332
MQ M29 unassigned family M29 unassigned peptidases MER0142019 VDG1235_4671
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0405704
PA S1 S01.500 HtrA peptidase (Helicobacter-type) MER0407709
PA S1 non-peptidase homologue subfamily S1B non-peptidase homologues MER0217945 VDG1235_1423
PA S1 unassigned subfamily S1A unassigned peptidases MER0178948 VDG1235_844
PA S1 unassigned subfamily S1A unassigned peptidases MER0179776 VDG1235_3604
PA S1 unassigned subfamily S1A unassigned peptidases MER0487064
PA S1 unassigned subfamily S1C unassigned peptidases MER0208453 VDG1235_4230
PA S1 unassigned subfamily S1C unassigned peptidases MER0407834
PA S1 unassigned subfamily S1C unassigned peptidases MER0408315
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0459271
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0177235 VDG1235_157
PB C44 unassigned family C44 unassigned peptidases MER0459272
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0136823 VDG1235_2546
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0436227
PC C26 C26.957 GMP synthase MER0440647
PC C26 C26.959 TRP3 protein MER0436226
PC C26 C26.964 CTP synthetase MER0449599
PC C26 unassigned family C26 unassigned peptidases MER0446938
PC C26 unassigned family C26 unassigned peptidases MER0445035
PC C26 unassigned family C26 unassigned peptidases MER0442652
PC C56 C56.975 ES1 protein homolog, mitochondrial MER0179786 VDG1235_3980
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0176999 VDG1235_22
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0141916 VDG1235_2617
PC S51 non-peptidase homologue family S51 non-peptidase homologues MER1060666 VDG1235_3362
PC S51 non-peptidase homologue family S51 non-peptidase homologues MER0141451 VDG1235_2218
PE T5 unassigned family T5 unassigned peptidases MER0179735 argJ VDG1235_2070
SB S8 unassigned subfamily S8A unassigned peptidases MER0978475 VDG1235_3988
SB S8 unassigned subfamily S8A unassigned peptidases MER0136713 VDG1235_1003
SB S8 unassigned subfamily S8A unassigned peptidases MER0179548 VDG1235_1449
SB S8 unassigned subfamily S8A unassigned peptidases MER0179732 VDG1235_1939
SB S8 unassigned subfamily S8A unassigned peptidases MER0179750 VDG1235_2538
SB S8 unassigned subfamily S8A unassigned peptidases MER0179781 VDG1235_3642
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0210779
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0216216 VDG1235_4381
SC S9 unassigned subfamily S9B unassigned peptidases MER1002015 VDG1235_848
SC S9 unassigned subfamily S9C unassigned peptidases MER0177649 VDG1235_273 VDG1235_273
SC S9 unassigned subfamily S9C unassigned peptidases MER0136714 VDG1235_3750
SC S9 unassigned family S9 unassigned peptidases MER0479159 VDG1235_475
SC S9 unassigned family S9 unassigned peptidases MER0141450 VDG1235_533
SC S9 unassigned family S9 unassigned peptidases MER0140967 VDG1235_881
SC S9 unassigned family S9 unassigned peptidases MER0209580 VDG1235_399
SC S9 unassigned family S9 unassigned peptidases MER0211536
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1026557 VDG1235_881
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0211127
SC S33 unassigned family S33 unassigned peptidases MER0211068 VDG1235_2000
SE S11 non-peptidase homologue family S11 non-peptidase homologues MER0975747 VDG1235_3667
SE S12 S12.950 esterase EstB MER0178772 VDG1235_588
SE S12 S12.950 esterase EstB MER0420297
SE S12 S12.950 esterase EstB MER0420393
SE S12 unassigned family S12 unassigned peptidases MER1027555 VDG1235_2314
SE S12 unassigned family S12 unassigned peptidases MER1011174 VDG1235_1563
SE S12 unassigned family S12 unassigned peptidases MER0179296 VDG1235_1350
SE S12 unassigned family S12 unassigned peptidases MER0139303 VDG1235_1580
SE S12 unassigned family S12 unassigned peptidases MER0137682 VDG1235_3468
SE S12 unassigned family S12 unassigned peptidases MER0164267 VDG1235_4557
SF S26 S26.026 PA1303 peptidase (Pseudomonas sp.) MER0136523 VDG1235_1159
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1051660 VDG1235_615
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER0139603 VDG1235_1146
SF S26 unassigned subfamily S26A unassigned peptidases MER0246823 VDG1235_1452
SK S14 S14.001 peptidase Clp (type 1) MER0143301 clpP2 VDG1235_4701
SK S14 S14.005 peptidase Clp (type 5) MER0179758 clpP1 VDG1235_2722
SK S41 S41.001 C-terminal processing peptidase-1 MER0141072 VDG1235_111
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER0178480 VDG1235_585
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER0164163 VDG1235_4501
SK S49 non-peptidase homologue subfamily S49B non-peptidase homologues MER1071343 VDG1235_2671
SK S49 unassigned subfamily S49A unassigned peptidases MER0142195 VDG1235_4202
ST S54 non-peptidase homologue family S54 non-peptidase homologues MER1080668 VDG1235_2951
ST S54 unassigned family S54 unassigned peptidases MER1076520 VDG1235_3849
ST S54 unassigned family S54 unassigned peptidases MER1082918 VDG1235_3770
ST S54 unassigned family S54 unassigned peptidases MER1083487 VDG1235_4026
ST S54 unassigned family S54 unassigned peptidases MER1080499 VDG1235_216
U- U32 U32.001 collagenase (Porphyromonas-type) MER0142648 VDG1235_485
U- U32 unassigned family U32 unassigned peptidases MER0179737 VDG1235_2261
U- U32 unassigned family U32 unassigned peptidases MER0179738 VDG1235_2261

GENOME ANALYSIS: Comparison with 12 completely sequenced genomes from phylum Verrucomicrobia
Family Comment
C1 significant presence (1 homologues)
C14 significant presence (1 homologues)
C15 significant presence (1 homologues)
M38 significant decrease in homologues (1 homologues)
M50 significant decrease in homologues (1 homologues)
M54 significant presence (1 homologues)
M61 significant presence (2 homologues)
S51 significant presence (2 homologues)

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