Parabacteroides johnsonii

Taxonomy
Taxonomy database identifier: 387661
Superkingdom Bacteria
Phylum Bacteroidetes
Order Bacteriodales
Family Porphyromonadaceae
Species johnsonii
Genus Parabacteroides
Peptidase View peptidase sequences from Parabacteroides johnsonii
Count of known and putative peptidases: 63, non-peptidase homologues 12
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AE A31 unassigned family A31 unassigned peptidases MER0184845 BN560_01430 PRABACTJOHN_01433
CA C1 non-peptidase homologue subfamily C1A non-peptidase homologues MER0703470 BN560_02146
CA C1 unassigned subfamily C1A unassigned peptidases MER0428510
CA C1 unassigned subfamily C1A unassigned peptidases MER0428511 BN560_02605
CA C1 unassigned subfamily C1B unassigned peptidases MER0170392 BN560_01066 PRABACTJOHN_03336
CD C11 unassigned family C11 unassigned peptidases MER0297773 BN560_00035/HMPREF1077_01839
CD C13 unassigned family C13 unassigned peptidases MER0358490 HMPREF1077_02110
CD C14 unassigned subfamily C14B unassigned peptidases MER0241283
CD C25 C25.004 PG0026 peptidase (Porphyromonas-type) MER0436090
CF C15 non-peptidase homologue family C15 non-peptidase homologues MER0697862 HMPREF1077_02317
CO C40 C40.004 spr peptidase MER0176911 PRABACTJOHN_02800
G- G5 unassigned family G5 unassigned peptidases MER0936782 HMPREF1077_0182/HMPREF1077_01829/PRABACTJOHN_00359
G- G5 unassigned family G5 unassigned peptidases MER0937499 PRABACTJOHN_02505
G- G5 unassigned family G5 unassigned peptidases MER0936324 HMPREF1077_02217
MA M1 unassigned family M1 unassigned peptidases MER0176396 PRABACTJOHN_01374
MA M3 unassigned subfamily M3A unassigned peptidases MER0199206 PRABACTJOHN_01848
MA M3 unassigned subfamily M3A unassigned peptidases MER0199205 HMPREF1077_03310
MA M6 unassigned family M6 unassigned peptidases MER0299845 HMPREF1077_00756
MA M13 M13.017 oligopeptidase O (Porphyromonas gingivalis) MER0311845 PRABACTJOHN_01301
MA M13 non-peptidase homologue family M13 non-peptidase homologues MER0339250 PRABACTJOHN_01304
MA M13 unassigned family M13 unassigned peptidases MER0468534
MA M41 M41.007 Afg3-like protein 2 MER0363163 ftsH PRABACTJOHN_02710
MA M48 non-peptidase homologue subfamily M48C non-peptidase homologues MER0886166 HMPREF1077_01152
MA M48 unassigned subfamily M48B unassigned peptidases MER0176436 PRABACTJOHN_01766
MA M48 unassigned family M48 unassigned peptidases MER0882917 HMPREF1077_02084
MA M49 M49.003 dipeptidyl-peptidase IIIB (Bacteroides thetaiotaomicron-type) MER0884033 HMPREF1077_0247/HMPREF1077_02479/PRABACTJOHN_03327
MA M56 unassigned family M56 unassigned peptidases MER0935107 PRABACTJOHN_01689
MA M56 unassigned family M56 unassigned peptidases MER0899798 PRABACTJOHN_02244
MA M56 unassigned family M56 unassigned peptidases MER0899705 PRABACTJOHN_03414
MA M56 unassigned family M56 unassigned peptidases MER0934641 HMPREF1077_01816/PRABACTJOHN_003/PRABACTJOHN_00376
MA M56 unassigned family M56 unassigned peptidases MER0934531 HMPREF1077_03219
MA M56 unassigned family M56 unassigned peptidases MER0934649 HMPREF1077_01808/PRABACTJOHN_003/PRABACTJOHN_00385
MA M64 unassigned family M64 unassigned peptidases MER0191122 PRABACTJOHN_01925
MA M78 unassigned family M78 unassigned peptidases MER0908677 PRABACTJOHN_02361
MA M78 unassigned family M78 unassigned peptidases MER0909602 PRABACTJOHN_03648
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0469301 PRABACTJOHN_02664
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0390798 PRABACTJOHN_02517
ME M16 unassigned subfamily M16B unassigned peptidases MER0391564 PRABACTJOHN_00515
ME M16 unassigned subfamily M16B unassigned peptidases MER0391986 PRABACTJOHN_00680
ME M16 unassigned family M16 unassigned peptidases MER0392752 PRABACTJOHN_01371
MG M24 non-peptidase homologue subfamily M24B non-peptidase homologues MER0481943
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0483604
MG M24 unassigned subfamily M24A unassigned peptidases MER0394571 map PRABACTJOHN_02463
MG M24 unassigned subfamily M24A unassigned peptidases MER0394173 map PRABACTJOHN_03159
MG M24 unassigned subfamily M24B unassigned peptidases MER0481944
MH M20 M20.003 peptidase T MER0276197 PRABACTJOHN_01357
MH M20 M20.012 Pep581 peptidase MER0176090 PRABACTJOHN_00285
MH M20 unassigned subfamily M20A unassigned peptidases MER0840810 HMPREF1077_01725/PRABACTJOHN_00483
MH M20 unassigned subfamily M20C unassigned peptidases MER0371201 pepD PRABACTJOHN_03456
MH M20 unassigned subfamily M20C unassigned peptidases MER0232406 PRABACTJOHN_03455
MH M20 unassigned subfamily M20F unassigned peptidases MER0807325 HMPREF1077_01228/PRABACTJOHN_025/PRABACTJOHN_02584
MH M28 non-peptidase homologue family M28 non-peptidase homologues MER0170816 PRABACTJOHN_04141
MH M28 unassigned subfamily M28A unassigned peptidases MER0176568 PRABACTJOHN_02068
MH M28 unassigned subfamily M28B unassigned peptidases MER0196078 HMPREF1077_01004
MH M28 unassigned subfamily M28E unassigned peptidases MER1059499
MJ M19 unassigned family M19 unassigned peptidases MER0170758 PRABACTJOHN_04140
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0864705 hutI/PRABACTJO/PRABACTJOHN_04084/PRABACTJOHN_04495
MM M50 unassigned family M50 unassigned peptidases MER0891860 HMPREF1077_00928/rseP
MO M23 M23.009 Mername-AA292 peptidase MER0387596 PRABACTJOHN_00163
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0170629 PRABACTJOHN_04008
MO M23 unassigned subfamily M23B unassigned peptidases MER0176984 PRABACTJOHN_02960
MO M23 unassigned subfamily M23B unassigned peptidases MER0389014 PRABACTJOHN_03043
MO M23 unassigned subfamily M23B unassigned peptidases MER0389324 PRABACTJOHN_03459
MO M23 unassigned subfamily M23B unassigned peptidases MER0477660
MO M23 unassigned subfamily M23B unassigned peptidases MER0171029 PRABACTJOHN_04393
MU M103 M103.UNW family M103 non-peptidase homologues MER0176662 PRABACTJOHN_02289
MU M103 M103.UPW family M103 unassigned peptidases MER0176697 PRABACTJOHN_02290
PA S1 S01.527 pepK (Porphyromonas gingivalis) MER0191495 PRABACTJOHN_00632
PA S1 S01.527 pepK (Porphyromonas gingivalis) MER0392571 HMPREF1077_01601
PA S1 unassigned subfamily S1C unassigned peptidases MER0408047 HMPREF1077_03677/PRABACTJOHN_00075
PA S1 unassigned subfamily S1D unassigned peptidases MER0191496 PRABACTJOHN_00885
PA S46 S46.001 dipeptidyl-peptidase 7 (Porphyromonas gingivalis-type) MER0217453 PRABACTJOHN_00535
PA S46 S46.002 dipeptidyl-peptidase 11 (Porphyromonas gingivalis-type) MER0217400 PRABACTJOHN_02704
PB C59 unassigned family C59 unassigned peptidases MER0330170 PRABACTJOHN_01027
PB C69 non-peptidase homologue family C69 non-peptidase homologues MER0736122 PRABACTJOHN_01128
PB C69 unassigned family C69 unassigned peptidases MER0277014 PRABACTJOHN_00868
PB C69 unassigned family C69 unassigned peptidases MER0736045 HMPREF1077_03530/PRABACTJOHN_011/PRABACTJOHN_01127
PB C69 unassigned family C69 unassigned peptidases MER0168886 PRABACTJOHN_00523
PB C69 unassigned family C69 unassigned peptidases MER0313843 PRABACTJOHN_01257
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0439222
PC C26 C26.956 carbamyl phosphate synthetase MER0441425
PC C26 C26.957 GMP synthase MER0443441 PRABACTJOHN_02687
PC C26 C26.964 CTP synthetase MER0447634 PRABACTJOHN_02843
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0444501 PRABACTJOHN_03073
PC C26 unassigned family C26 unassigned peptidases MER0170759 PRABACTJOHN_04140
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0730233 HMPREF1077_03017/PRABACTJOHN_014/PRABACTJOHN_01455
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0168674 PRABACTJOHN_00037
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER0982140 HMPREF1077_00610
SB S8 unassigned subfamily S8A unassigned peptidases MER0171096 PRABACTJOHN_04399
SC S9 S09.013 dipeptidyl-peptidase 4 (bacteria-type 2) MER0176768 PRABACTJOHN_02440
SC S9 S09.013 dipeptidyl-peptidase 4 (bacteria-type 2) MER0170582 PRABACTJOHN_03838
SC S9 S09.075 dipeptidyl-peptidase 5 (Porphyromonas sp.) MER0192631 PRABACTJOHN_02643
SC S9 unassigned subfamily S9B unassigned peptidases MER1020032 HMPREF1077_01550
SC S9 unassigned subfamily S9B unassigned peptidases MER1016896 BN560_02521
SC S9 unassigned subfamily S9B unassigned peptidases MER0170875 PRABACTJOHN_04237
SC S9 unassigned subfamily S9C unassigned peptidases MER0192630 PRABACTJOHN_00695 PRABACTJOHN_00695
SC S9 unassigned subfamily S9C unassigned peptidases MER1120709
SC S9 unassigned subfamily S9C unassigned peptidases MER0192651 PRABACTJOHN_01684
SC S9 unassigned subfamily S9C unassigned peptidases MER0176607 PRABACTJOHN_02222
SC S9 unassigned subfamily S9D unassigned peptidases MER0692017 BN560_02521
SC S9 unassigned subfamily S9D unassigned peptidases MER0693012 BN560_01306
SC S9 unassigned family S9 unassigned peptidases MER0489566 PRABACTJOHN_02562
SC S9 unassigned family S9 unassigned peptidases MER0170455 PRABACTJOHN_03370
SC S9 unassigned family S9 unassigned peptidases MER0170920 PRABACTJOHN_04243
SC S28 non-peptidase homologue family S28 non-peptidase homologues MER1053871 HMPREF1077_01543/PRABACTJOHN_00700
SC S33 unassigned family S33 unassigned peptidases MER0478125 PRABACTJOHN_03409
SC S33 unassigned family S33 unassigned peptidases MER0210934
SC S37 non-peptidase homologue family S37 non-peptidase homologues MER0309219 PRABACTJOHN_00700
SE S11 non-peptidase homologue family S11 non-peptidase homologues MER0947750 PRABACTJOHN_02345
SE S11 unassigned family S11 unassigned peptidases MER0948829 PRABACTJOHN_03423
SE S12 unassigned family S12 unassigned peptidases MER1005894 HMPREF1077_0247/HMPREF1077_02475/PRABACTJOHN_03331
SE S12 unassigned family S12 unassigned peptidases MER0420124
SE S13 unassigned family S13 unassigned peptidases MER0298571
SF S26 S26.001 signal peptidase I MER0170978 lepB PRABACTJOHN_04360
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1046473 HMPREF1077_01780/lepB
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1051072 PRABACTJOHN_04295
SF S26 unassigned subfamily S26A unassigned peptidases MER0168833 PRABACTJOHN_00425
SF S26 unassigned subfamily S26A unassigned peptidases MER0334047 PRABACTJOHN_04294
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER1032480 HMPREF1077_0144/HMPREF1077_01445/PRABACTJOHN_00798
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER1033814 HMPREF1077_03263/radA
SJ S16 unassigned family S16 unassigned peptidases MER0176860 PRABACTJOHN_02739
SK S14 S14.001 peptidase Clp (type 1) MER0358494 clpP PRABACTJOHN_02501
SK S41 S41.004 C-terminal processing peptidase-3 MER0176520 PRABACTJOHN_01851
SK S41 S41.005 tricorn core peptidase (archaea) MER0171160
SK S41 S41.005 tricorn core peptidase (archaea) MER0171161 PRABACTJOHN_04411
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER1062143 PRABACTJOHN_00722
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER1059246 HMPREF1077_02097
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER1056084 HMPREF1077_01527
SK S41 unassigned subfamily S41A unassigned peptidases MER1057676 HMPREF1077_0245/HMPREF1077_02456/PRABACTJOHN_03353
SK S41 unassigned subfamily S41A unassigned peptidases MER0337299 HMPREF1077_01418
SK S41 unassigned subfamily S41A unassigned peptidases MER0170694 HMPREF1077_00310
SK S49 unassigned subfamily S49A unassigned peptidases MER0168729 PRABACTJOHN_00365
SK S49 unassigned subfamily S49C unassigned peptidases MER1071087 HMPREF1077_01027/PRABACTJOHN_02837
ST S54 unassigned family S54 unassigned peptidases MER1078877 HMPREF1077_02161/PRABACTJOHN_00096
ST S54 unassigned family S54 unassigned peptidases MER1076298 HMPREF1077_00294/PRABACTJOHN_04095
ST S54 unassigned family S54 unassigned peptidases MER1083127 HMPREF1077_00295/PRABACTJOHN_040/PRABACTJOHN_04094
U- U32 U32.001 collagenase (Porphyromonas-type) MER0168779 PRABACTJOHN_00382
U- U32 U32.003 collagenase (Salmonella-type) MER0176823 PRABACTJOHN_02731

GENOME ANALYSIS: Comparison with 21 completely sequenced genomes from family Porphyromonadaceae
Family Comment