Afipia sp. 1NLS2

Taxonomy
Taxonomy database identifier: 666684
Superkingdom		Bacteria
Phylum		Proteobacteria
Class		Alphaproteobacteria
Order		Rhizobiales
Family		Bradyrhizobiaceae
Genus		Afipia
Species		sp. 1NLS2
Peptidase			View peptidase sequences from Afipia sp. 1NLS2
Count of known and putative peptidases: 40, non-peptidase homologues 5
Completely sequences genomes from subspecies and strains				Protein coding genes
	To show all strains with completely sequenced genomes, click here.

Clan	Family	MEROPS ID	Peptidase or homologue (subtype)	MERNUM	Gene	Locus
AA	A32	A32.001	PerP peptidase (Caulobacter sp.)	MER0241839		AfiDRAFT_1913
AA	A32	unassigned	family A32 unassigned peptidases	MER0241643		AfiDRAFT_0940
AC	A8	unassigned	family A8 unassigned peptidases	MER0401271	lspA	AfiDRAFT_2551
AD	A24	non-peptidase homologue	subfamily A24A non-peptidase homologues	MER0692662	AfiDRAFT_0609
CA	C39	non-peptidase homologue	family C39 non-peptidase homologues	MER0717063	AfiDRAFT_2318
CA	C93	unassigned	family C93 unassigned peptidases	MER0393168
CA	C93	unassigned	family C93 unassigned peptidases	MER0391715
CF	C15	unassigned	family C15 unassigned peptidases	MER0292617		AfiDRAFT_1800
CL	C82	C82.003	ykuD transpeptidase	MER0462338
CL	C82	C82.003	ykuD transpeptidase	MER0462339
CL	C82	C82.003	ykuD transpeptidase	MER0462340
CL	C82	C82.003	ykuD transpeptidase	MER0462341
CL	C82	C82.003	ykuD transpeptidase	MER0462342
CL	C82	C82.003	ykuD transpeptidase	MER0463758
CL	C82	C82.003	ykuD transpeptidase	MER0463759
CL	C82	unassigned	subfamily C82A unassigned peptidases	MER0462337
CL	C82	unassigned	subfamily C82A unassigned peptidases	MER0243911
CL	C82	unassigned	subfamily C82A unassigned peptidases	MER0321990
CL	C82	unassigned	subfamily C82A unassigned peptidases	MER0462343
CO	C40	C40.001	dipeptidyl-peptidase VI (bacteria)	MER0305249		AfiDRAFT_0618
CO	C40	non-peptidase homologue	family C40 non-peptidase homologues	MER0723335	AfiDRAFT_1859
G-	G5	unassigned	family G5 unassigned peptidases	MER0940389	AfiDRAFT_3458
MA	M3	unassigned	subfamily M3A unassigned peptidases	MER0340812
MA	M3	unassigned	subfamily M3B unassigned peptidases	MER0342573		AfiDRAFT_0383
MA	M41	M41.001	FtsH peptidase	MER0300822
MA	M48	unassigned	subfamily M48C unassigned peptidases	MER0889237	AfiDRAFT_1139
MA	M48	unassigned	family M48 unassigned peptidases	MER0886519	AfiDRAFT_2094
MA	M78	unassigned	family M78 unassigned peptidases	MER0908870	AfiDRAFT_1091
MA	M78	unassigned	family M78 unassigned peptidases	MER0909616	AfiDRAFT_1216
MD	M74	unassigned	family M74 unassigned peptidases	MER0280026		AfiDRAFT_0961
ME	M16	non-peptidase homologue	subfamily M16B non-peptidase homologues	MER0928011	AfiDRAFT_2548
ME	M16	unassigned	subfamily M16B unassigned peptidases	MER0315587		AfiDRAFT_2384
ME	M16	unassigned	subfamily M16B unassigned peptidases	MER0390592		AfiDRAFT_2549
MF	M17	unassigned	family M17 unassigned peptidases	MER0340556		AfiDRAFT_0617
MF	M17	unassigned	family M17 unassigned peptidases	MER0339965	pepA	AfiDRAFT_2037
MG	M24	M24.009	aminopeptidase P1	MER0482237
MG	M24	unassigned	subfamily M24A unassigned peptidases	MER0394105	map	AfiDRAFT_0972
MH	M20	non-peptidase homologue	subfamily M20D non-peptidase homologues	MER0817175	AfiDRAFT_3814
MH	M20	unassigned	subfamily M20A unassigned peptidases	MER0852558	dapE
MH	M20	unassigned	subfamily M20B unassigned peptidases	MER0370636		AfiDRAFT_3357
MH	M20	unassigned	family M20D unassigned peptidases	MER0372160		AfiDRAFT_1785
MH	M20	unassigned	family M20 unassigned peptidases	MER0851753	AfiDRAFT_1807
MJ	M38	non-peptidase homologue	family M38 non-peptidase homologues	MER0870786	AfiDRAFT_3092
MM	M50	unassigned	subfamily M50B unassigned peptidases	MER0897253	AfiDRAFT_3314
MO	M23	M23.009	Mername-AA292 peptidase	MER0276571		AfiDRAFT_2101
MO	M23	M23.009	Mername-AA292 peptidase	MER0388378		AfiDRAFT_0518
MO	M23	non-peptidase homologue	subfamily M23B non-peptidase homologues	MER0388167		AfiDRAFT_3253
MO	M23	non-peptidase homologue	family M23 non-peptidase homologues	MER0480075
MU	M103	M103.001	TldD peptidase (Escherichia coli)	MER0332585		AfiDRAFT_2373
MU	M103	M103.UNW	family M103 non-peptidase homologues	MER0236870		AfiDRAFT_2532
NB	N6	N06.A01	FlhB protein (Escherichia coli)	MER0405330
PA	S1	S01.442	HtrA stress response protease (Brucella-type)	MER0406547
PA	S1	unassigned	subfamily S1A unassigned peptidases	MER0488629
PA	S1	unassigned	subfamily S1C unassigned peptidases	MER0327678		AfiDRAFT_0211
PA	S1	unassigned	subfamily S1C unassigned peptidases	MER0407496
PB	C44	C44.001	amidophosphoribosyltransferase precursor	MER0454659
PB	C44	C44.003	glutamate synthase (NADPH) large chain	MER0459512
PB	C44	non-peptidase homologue	family C44 non-peptidase homologues	MER0456342
PB	C44	unassigned	family C44 unassigned peptidases	MER0459513
PB	T1	T01.006	HslV component of HslUV peptidase	MER0491095
PB	T3	T03.001	gamma-glutamyltransferase 1 (bacterial-type)	MER0307170		AfiDRAFT_1485
PB	T3	T03.014	gamma-glutamyltransferase 2 (bacterial)	MER0379752		AfiDRAFT_1635
PB	T3	T03.025	oxamate amidohydrolase proenzyme (Klebsiella pneumonia)	MER0379450		AfiDRAFT_2991
PB	T3	T03.025	oxamate amidohydrolase proenzyme (Klebsiella pneumonia)	MER0379607		AfiDRAFT_3094
PC	C26	C26.955	aminodeoxychorismate synthase, subunit II	MER0439640
PC	C26	C26.959	TRP3 protein	MER0439200
PC	C26	C26.964	CTP synthetase	MER0450100
PC	C26	C26.A07	At1g63660 (Arabidopsis thaliana)	MER0442661
PC	C26	unassigned	family C26 unassigned peptidases	MER0439673
PC	C26	unassigned	family C26 unassigned peptidases	MER0445214
PC	C26	unassigned	family C26 unassigned peptidases	MER0446452
PC	C56	C56.001	PfpI peptidase	MER0310780		AfiDRAFT_3243
PC	C56	non-peptidase homologue	family C56 non-peptidase homologues	MER0385956		AfiDRAFT_1990
PE	T5	T05.001	ornithine acetyltransferase precursor	MER0380543	argJ	AfiDRAFT_1164
SB	S8	unassigned	subfamily S8A unassigned peptidases	MER0976106	AfiDRAFT_1797
SC	S9	non-peptidase homologue	subfamily S9C non-peptidase homologues	MER0477212
SC	S33	non-peptidase homologue	family S33 non-peptidase homologues	MER0381228		AfiDRAFT_2805
SE	S11	unassigned	family S11 unassigned peptidases	MER0947861	AfiDRAFT_3810
SE	S11	unassigned	family S11 unassigned peptidases	MER0351623		AfiDRAFT_0573
SE	S11	unassigned	family S11 unassigned peptidases	MER0351010		AfiDRAFT_2214
SE	S11	unassigned	family S11 unassigned peptidases	MER0351991		AfiDRAFT_3487
SF	S24	S24.001	repressor LexA	MER0375663	lexA	AfiDRAFT_3303
SF	S24	unassigned	family S24 unassigned peptidases	MER1042963	AfiDRAFT_2361
SF	S26	S26.001	signal peptidase I	MER0229667		AfiDRAFT_3423
SF	S26	S26.001	signal peptidase I	MER0333267		AfiDRAFT_2372
SF	S26	S26.014	TraF peptidase	MER0287698		AfiDRAFT_0832
SF	S26	S26.014	TraF peptidase	MER0269475		AfiDRAFT_1013
SF	S26	S26.014	TraF peptidase	MER0269874		AfiDRAFT_1349
SH	S78	S78.001	prohead peptidase (bacteriophage HK97)	MER0322839
SJ	S16	S16.001	Lon-A peptidase	MER0299840
SJ	S16	S16.A04	DNA repair protein RadA (Escherichia coli)	MER0475306
SK	S14	S14.001	peptidase Clp (type 1)	MER0229507	clpP	AfiDRAFT_3363
SK	S14	unassigned	family S14 unassigned peptidases	MER0491591
SK	S41	S41.004	C-terminal processing peptidase-3	MER0337228		AfiDRAFT_3777
SK	S49	unassigned	subfamily S49B unassigned peptidases	MER1069784	AfiDRAFT_1662
SK	S49	unassigned	subfamily S49B unassigned peptidases	MER1067400	AfiDRAFT_3006
ST	S54	unassigned	family S54 unassigned peptidases	MER1076657	AfiDRAFT_3630

GENOME ANALYSIS: Comparison with 27 completely sequenced genomes from family Bradyrhizobiaceae
Family	Comment
C56	significant decrease in homologues (2 homologues)
S33	significant decrease in homologues (1 homologues)
S78	significant decrease in homologues (1 homologues)