Alicycliphilus denitrificans

Taxonomy
Taxonomy database identifier: 179636
Superkingdom Bacteria
Phylum Proteobacteria
Class Betaproteobacteria
Order Burkholderiales
Species denitrificans
Family Comamonadaceae
Genus Alicycliphilus
Peptidase View peptidase sequences from Alicycliphilus denitrificans
Count of known and putative peptidases: 112, non-peptidase homologues 34
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 unassigned family A32 unassigned peptidases MER0241849 Alide_1496
AA A32 unassigned family A32 unassigned peptidases MER0235343 Alide2_4797
AA A32 unassigned family A32 unassigned peptidases MER0234802 Alide2_4800
AC A8 unassigned family A8 unassigned peptidases MER0232512 lspA Alide2_3722
AC A8 unassigned family A8 unassigned peptidases MER1154994
AC A8 unassigned family A8 unassigned peptidases MER0244451 lspA Alide2_1819
AD A24 A24.001 type 4 prepilin peptidase 1 MER0234211 Alide2_0872
CA C1 unassigned subfamily C1A unassigned peptidases MER0234189 Alide_0263
CO C40 C40.006 PgpA peptidase MER0234238 Alide2_2438
CO C40 C40.006 PgpA peptidase MER0234184 Alide2_0023
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0234224 Alide_1485
MA M3 M03.004 oligopeptidase A MER0234237 Alide_2222
MA M12 unassigned subfamily M12A unassigned peptidases MER0234287 Alide_4107
MA M41 M41.001 FtsH peptidase MER0234243 ftsH1 Alide_2498
MA M41 unassigned family M41 unassigned peptidases MER0234283 ftsH Alide2_4290
MA M41 unassigned family M41 unassigned peptidases MER0244688 ftsH Alide2_2059
MA M48 M48.002 HtpX peptidase MER0234280 htpX Alide2_4123
MA M48 unassigned subfamily M48A unassigned peptidases MER0234216 Alide_1213
MA M48 unassigned subfamily M48B unassigned peptidases MER0887124 Alide2_4782
MA M48 unassigned subfamily M48B unassigned peptidases MER0244676 Alide2_2056
MA M48 unassigned subfamily M48C unassigned peptidases MER0234193 Alide_0318
MA M48 unassigned subfamily M48C unassigned peptidases MER0234293 Alide_4257
MA M61 M61.002 BcepAP aminopeptidase (Burkholderia cepacia) MER0234277 Alide_3651
MA M78 unassigned family M78 unassigned peptidases MER0908957 Alide_0475
MA M78 unassigned family M78 unassigned peptidases MER0234197 Alide_0472
MA M90 unassigned family M90 unassigned peptidases MER0286934 Alide_2113
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0234221 Alide_1446
MD M15 unassigned subfamily M15C unassigned peptidases MER0234204 Alide_0778
ME M16 M16.019 YMXG peptidase MER0234271 Alide_3450
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0234270 Alide_3449
ME M16 unassigned subfamily M16B unassigned peptidases MER0234269 Alide_3449
MF M17 unassigned family M17 unassigned peptidases MER0234236 pepA Alide2_2361
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0234249 map Alide2_2929
MG M24 unassigned subfamily M24B unassigned peptidases MER0234291 Alide_4160
MH M20 non-peptidase homologue subfamily M20D non-peptidase homologues MER0234276 Alide_3643
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0234261 Alide_3108
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0234295 Alide_4372
MH M20 unassigned subfamily M20A unassigned peptidases MER0234239 dapE Alide_2270
MH M20 unassigned family M20D unassigned peptidases MER0234198 Alide2_0488
MH M20 unassigned family M20D unassigned peptidases MER0234205 Alide_0810
MH M20 unassigned family M20D unassigned peptidases MER0234186 Alide_0175
MH M20 unassigned family M20D unassigned peptidases MER0234187 Alide2_0169
MH M20 unassigned family M20D unassigned peptidases MER0234272 Alide_3506
MH M20 unassigned family M20D unassigned peptidases MER0234231 Alide2_2079
MH M20 unassigned family M20 unassigned peptidases MER0234260 Alide_3107
MH M20 unassigned family M20 unassigned peptidases MER0234296 Alide_4385
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0234212 Alide_1067
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0234275 Alide_3624
MJ M38 unassigned family M38 unassigned peptidases MER0234252 hutI Alide_2770
MM M50 non-peptidase homologue subfamily M50B non-peptidase homologues MER0892435 Alide_3352
MM M50 unassigned subfamily M50B unassigned peptidases MER0896059 Alide2_1095
MM M50 unassigned subfamily M50B unassigned peptidases MER0234223 Alide_1471
MN M55 unassigned family M55 unassigned peptidases MER0234298 Alide_4408
MO M23 M23.009 Mername-AA292 peptidase MER0234200 Alide_0713
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0234257 Alide_3045
MO M23 unassigned subfamily M23B unassigned peptidases MER0234235 Alide_2026
MT M81 unassigned family M81 unassigned peptidases MER0317473 Alide2_1005
MT M81 unassigned family M81 unassigned peptidases MER0317490 Alide_4373
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0234278 Alide2_3824
MU M103 M103.UNW family M103 non-peptidase homologues MER0234213 Alide_1128
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0234282 Alide2_4216
PA S1 S01.281 arginyl peptidase MER0234199 Alide_0580
PA S1 S01.453 MucD peptidase MER0234274 Alide_3619
PA S1 non-peptidase homologue subfamily S1D non-peptidase homologues MER1275755
PA S1 unassigned subfamily S1A unassigned peptidases MER0244694 Alide2_2822
PA S1 unassigned subfamily S1C unassigned peptidases MER0234265 Alide_3177 Alide2_1270
PA S1 unassigned subfamily S1C unassigned peptidases MER0234208 Alide2_0855
PA S1 unassigned subfamily S1C unassigned peptidases MER0234215 Alide2_3747
PA S1 unassigned subfamily S1C unassigned peptidases MER0234203 Alide2_0723
PA S1 unassigned subfamily S1C unassigned peptidases MER0244674 Alide2_2055
PA S1 unassigned subfamily S1C unassigned peptidases MER0244651 Alide2_2724
PA S1 unassigned subfamily S1C unassigned peptidases MER0244392 Alide2_3374
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0234225 Alide_1513
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0234207 Alide_0854
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0234201 glmS Alide_0721
PB C44 unassigned family C44 unassigned peptidases MER0234286 Alide_4097
PB C44 unassigned family C44 unassigned peptidases MER0234202 Alide_0745
PB T1 T01.007 CodW component of CodWX peptidase MER0234279 hslV Alide_3717
PB T2 unassigned family T2 unassigned peptidases MER0234300 Alide_4414
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0234294 Alide_4353
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0234219 Alide2_3516
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0234259 Alide_3091
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0234284 Alide_3986
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0234285 Alide2_4388
PC C26 C26.957 GMP synthase MER0234233 guaA Alide_1954
PC C26 C26.964 CTP synthetase MER0449137 pyrG Alide_1094
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0446711 hisH Alide2_0835
PC C26 unassigned family C26 unassigned peptidases MER0234244 carA Alide_2505
PC C26 unassigned family C26 unassigned peptidases MER0234267 Alide_3410
PC C26 unassigned family C26 unassigned peptidases MER0234292 Alide_4172
PC C56 C56.972 phosphoribosylformylglycinamidine synthase MER0234248 Alide_2611
PC S51 S51.001 dipeptidase E MER0234281 Alide_3822
PE P1 P01.101 pantetheinyl hydrolase ThnT precursor MER0234222 Alide_1450
PE P1 unassigned family P01 unassigned peptidases MER0234299 Alide_4409
PE T5 T05.001 ornithine acetyltransferase precursor MER0234210 argJ Alide_0910
SB S8 unassigned subfamily S8A unassigned peptidases MER0244576 Alide2_1789
SC S9 S09.940 S-formylglutathione hydrolase FrmB (Escherichi coli) MER0234241 Alide_2352
SC S9 unassigned family S9 unassigned peptidases MER0234227 Alide_1613
SC S9 unassigned family S9 unassigned peptidases MER0479233 Alide2_3555
SC S9 unassigned family S9 unassigned peptidases MER0479106 Alide2_4323
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1024377 Alide_1374
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1020382 Alide2_4323
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1021603 Alide2_4333
SC S33 S33.976 Williams-Beuren syndrome critical region protein 21 epoxide hydrolase MER0234240 Alide_2334
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0234185 Alide_0106
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0234246 Alide_2603
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0234258 Alide_3062
SC S33 unassigned family S33 unassigned peptidases MER0234191 Alide_0277
SC S33 unassigned family S33 unassigned peptidases MER0234194 Alide_0336
SC S33 unassigned family S33 unassigned peptidases MER0234195 Alide_0359
SC S33 unassigned family S33 unassigned peptidases MER0234232 Alide_1924
SC S33 unassigned family S33 unassigned peptidases MER0234251 Alide_2648
SC S33 unassigned family S33 unassigned peptidases MER0234254 Alide_2940
SC S33 unassigned family S33 unassigned peptidases MER0234297 metX Alide_4391
SC S33 unassigned family S33 unassigned peptidases MER0244545 Alide2_1858
SE S11 S11.002 murein-DD-endopeptidase MER0234229 Alide2_3120
SE S11 unassigned family S11 unassigned peptidases MER0234196 Alide_0405
SE S13 S13.003 D-Ala-D-Ala carboxypeptidase PBP3 MER0234289 Alide2_4487
SF S24 S24.001 repressor LexA MER0234250 lexA Alide2_2949
SF S24 S24.003 UmuD protein MER0234214 Alide_1135
SF S24 S24.003 UmuD protein MER0234230 Alide2_2066
SF S24 non-peptidase homologue family S24 non-peptidase homologues MER0244618 Alide2_2790
SF S24 non-peptidase homologue family S24 non-peptidase homologues MER0244454 Alide2_3330
SF S24 unassigned family S24 unassigned peptidases MER0234217 Alide_1250
SF S24 unassigned family S24 unassigned peptidases MER0234228 Alide_1662
SF S26 S26.001 signal peptidase I MER0234264 Alide2_1272
SF S26 S26.014 TraF peptidase MER0234188 Alide_0235
SF S26 S26.014 TraF peptidase MER0234253 Alide_2876
SF S26 S26.014 TraF peptidase MER0234156 Alide_4427
SF S26 S26.014 TraF peptidase MER0244673 Alide2_2810
SF S26 non-peptidase homologue subfamily S26C non-peptidase homologues MER0244711 Alide2_2974
SF S26 non-peptidase homologue subfamily S26C non-peptidase homologues MER0244355 Alide2_3349
SF S26 unassigned subfamily S26A unassigned peptidases MER0244411 Alide2_1587
SF S26 unassigned subfamily S26A unassigned peptidases MER0244441 Alide2_4771
SF S26 unassigned subfamily S26C unassigned peptidases MER0270124 Alide_4538
SH S73 S73.001 gpO peptidase (Enterobacteria phage P2) MER0234218 Alide_1283
SH S78 unassigned family S78 unassigned peptidases MER0234220 Alide_1435
SJ S16 S16.001 Lon-A peptidase MER0234255 lon Alide2_1461
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0234192 Alide_0293
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0234190 Alide_0266
SK S14 S14.001 peptidase Clp (type 1) MER0234256 clpP Alide_2988
SK S41 unassigned subfamily S41A unassigned peptidases MER0234268 Alide2_0996
SK S49 S49.003 protein C (bacteriophage lambda) MER0234496 Alide_3549
SK S49 S49.003 protein C (bacteriophage lambda) MER0244590 Alide2_2023
SK S49 unassigned subfamily S49B unassigned peptidases MER1067297 Alide_3192
SK S49 unassigned subfamily S49B unassigned peptidases MER0321605 Alide_4597
SS S66 S66.002 murein tetrapeptidase LD-carboxypeptidase (Escherichia-type) MER0234245 Alide_2602
U- U32 U32.002 collagenase (Helicobacter-type) MER0234234 Alide_1985
U- U32 U32.003 collagenase (Salmonella-type) MER0234247 Alide_2605
U- U32 U32.A01 YhbV protein (Escherichia coli) MER0234263 Alide_3131
U- U32 unassigned family U32 unassigned peptidases MER0234262 Alide_3130

GENOME ANALYSIS: Comparison with 31 completely sequenced genomes from family Comamonadaceae
Family Comment
C1 significant presence (1 homologues)
C56 significant decrease in homologues (1 homologues)
M12 significant presence (1 homologues)
S78 significant presence (1 homologues)