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MEROPS SUBMISSIONS

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Serratia symbiotica

Taxonomy
Taxonomy database identifier: 138074
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Enterobacteriales
Family Enterobacteriaceae
Genus Serratia
Species symbiotica
Peptidase View peptidase sequences from Serratia symbiotica
Count of known and putative peptidases: 38, non-peptidase homologues 12
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 A08.001 signal peptidase II MER0324326 lspA
AC A8 A08.001 signal peptidase II MER0283699 lspA SCc_113
AC A8 unassigned family A8 unassigned peptidases MER1152910 lspA
AD A24 non-peptidase homologue subfamily A24A non-peptidase homologues MER0476503 pilU
AD A24 unassigned subfamily A24A unassigned peptidases MER0671043 SYMBAF_10057
AD A24 unassigned subfamily A24A unassigned peptidases MER0675469 pilU
AD A24 unassigned family A24 unassigned peptidases MER0692220 SYMBAF_160020
CA C39 non-peptidase homologue family C39 non-peptidase homologues MER0717074 SYMBAF_20177
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0243836
CL C82 non-peptidase homologue subfamily C82A non-peptidase homologues MER0739170 ybiS
CL C82 unassigned subfamily C82A unassigned peptidases MER0741789 ybiS
CO C40 non-peptidase homologue family C40 non-peptidase homologues MER0377131 ydhO SSYM_0841
CO C40 unassigned family C40 unassigned peptidases MER0722245 spr
CO C40 unassigned family C40 unassigned peptidases MER0719625 nlpC
G- G5 unassigned family G5 unassigned peptidases MER0911708 SYMBAF_20087
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0336087 pepN SSYM_2508
MA M3 M03.004 oligopeptidase A MER1185284
MA M3 M03.004 oligopeptidase A MER0283448 prlC SCc_714
MA M3 M03.004 oligopeptidase A MER0333593 prlC
MA M41 M41.001 FtsH peptidase MER0876988 hflB
MA M41 M41.001 FtsH peptidase MER0283116 hflB SCc_062
MA M48 M48.002 HtpX peptidase MER0883678 htpX
MA M48 M48.002 HtpX peptidase MER0283956 htpX SSYM_0668
MA M48 M48.023 BepA (Escherichia coli) MER0889174 yfgC
MD M15 unassigned subfamily M15B unassigned peptidases MER0837126 vanY
MD M74 M74.001 murein endopeptidase MER0313043 mepA SSYM_2350
MD M74 unassigned family M74 unassigned peptidases MER1261907
MD M74 unassigned family M74 unassigned peptidases MER1262348
ME M16 unassigned subfamily M16A unassigned peptidases MER0280690 ptrA SSYM_1524
MF M17 M17.003 PepA aminopeptidase MER0283525 yrbA SCc_750
MF M17 M17.003 PepA aminopeptidase MER0289576 pepA SSYM_1016
MF M17 M17.004 PepB aminopeptidase MER0340357 pepB SSYM_0992
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER1223859 map
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0283861 map SSYM_1933
MG M24 M24.003 Xaa-Pro dipeptidase (bacteria-type) MER0482339 pepQ
MG M24 M24.004 aminopeptidase P (bacteria) MER0283837 pepP SCc_189
MG M24 M24.004 aminopeptidase P (bacteria) MER0319155 pepP SSYM_2023
MG M24 unassigned subfamily M24A unassigned peptidases MER1221754
MH M20 M20.010 DapE peptidase MER0847366 dapE
MH M20 M20.010 DapE peptidase MER0283313 dapE SCc_332
MH M20 M20.974 acetylornithine deacetylase ArgE MER0805882 argE
MH M20 M20.974 acetylornithine deacetylase ArgE MER0852947 argE
MH M20 unassigned subfamily M20C unassigned peptidases MER0594111 pepD
MM M50 M50.004 RseP peptidase MER0894131 yaeL
MM M50 M50.004 RseP peptidase MER0898633 rseP
MO M23 M23.011 YebA peptidase MER0283832 yebA SCc_353
MO M23 M23.011 YebA peptidase MER0477175 yebA
MO M23 M23.950 YibP g.p. (Escherichia sp.) MER0479099 envC
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0283798 nlpD SCc_165
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0477880 nlpD
MU M103 M103.950 microcin-processing peptidase 1 homologue MER0238390 pmbA SSYM_1546
PA S1 S01.274 DegQ peptidase MER0327517 degQ SSYM_1174
PA S1 unassigned subfamily S1B unassigned peptidases MER0964809 htrA
PA S1 unassigned subfamily S1C unassigned peptidases MER0900524 degQ
PA S1 unassigned subfamily S1C unassigned peptidases MER1270640 degQ
PA S1 unassigned subfamily S1C unassigned peptidases MER0276777 degP SSYM_2382
PA S6 unassigned family S6 unassigned peptidases MER1274711
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0283360 purF SCc_497
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0454709 purF
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0283019 glmS SCc_010
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0459677 asnB
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0456524 glmS
PB T1 T01.006 HslV component of HslUV peptidase MER0323456
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0436401 pabA
PC C26 C26.964 CTP synthetase MER0447963 pyrG SCc_149
PC C26 C26.964 CTP synthetase MER0448646 pyrG
PC C26 unassigned family C26 unassigned peptidases MER0283702 carA SCc_116
PC C26 unassigned family C26 unassigned peptidases MER0283456 guaA SCc_555
PC C26 unassigned family C26 unassigned peptidases MER0444133 guaA
PC C26 unassigned family C26 unassigned peptidases MER0441485 carA
PC C56 C56.972 phosphoribosylformylglycinamidine synthase MER0283955 purL SCc_570
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0731936 yajL
SC S9 unassigned subfamily S9A unassigned peptidases MER0994813 SYMBAF_20369
SC S9 unassigned subfamily S9A unassigned peptidases MER0994196 ptrB
SE S11 S11.002 murein-DD-endopeptidase MER0949583 pbpG
SE S11 S11.008 penicillin-binding protein 5-type peptidase MER0351428 dacA SSYM_0760
SE S12 unassigned family S12 unassigned peptidases MER0990539 ampH
SE S13 S13.001 D-Ala-D-Ala peptidase C MER0298447
SF S24 S24.001 repressor LexA MER0304361
SF S24 S24.003 UmuD protein MER0375290 umuD SSYM_1853
SF S24 unassigned family S24 unassigned peptidases MER1045175 SCTVLC_1146
SF S24 unassigned family S24 unassigned peptidases MER1040359 umuD
SF S24 unassigned family S24 unassigned peptidases MER1044109 SYMBAF_100026
SF S24 unassigned family S24 unassigned peptidases MER1045363 umuD
SF S24 unassigned family S24 unassigned peptidases MER1040935 SYMBAF_30151
SF S24 unassigned family S24 unassigned peptidases MER1043115 umuD
SF S24 unassigned family S24 unassigned peptidases MER1042484 umuD
SF S24 unassigned family S24 unassigned peptidases MER1328619
SF S26 S26.001 signal peptidase I MER0276476 lepB SSYM_0907
SF S26 S26.001 signal peptidase I MER0283153 lepB SCc_246
SF S26 unassigned subfamily S26A unassigned peptidases MER1332789 lepB
SF S26 unassigned subfamily S26A unassigned peptidases MER1332741
SH S78 unassigned family S78 unassigned peptidases MER1078134 SCTVLC_1492
SH S78 unassigned family S78 unassigned peptidases MER1086916 SSYM_2540
SJ S16 S16.001 Lon-A peptidase MER0276263 lon SSYM_2331
SJ S16 S16.001 Lon-A peptidase MER0283330 lon SCc_484
SJ S16 S16.A10 ycbZ (Escherichia coli) MER0283363 ycbZ SCc_502
SJ S16 unassigned family S16 unassigned peptidases MER1031276 ycbZ
SJ S16 unassigned family S16 unassigned peptidases MER1324231 lon
SJ S16 unassigned family S16 unassigned peptidases MER0361820 radA SSYM_1811
SK S14 S14.001 peptidase Clp (type 1) MER0283312 clpP SCc_482
SK S14 S14.001 peptidase Clp (type 1) MER0299103 clpP
SK S14 unassigned family S14 unassigned peptidases MER1317333 clpP
SK S14 unassigned family S14 unassigned peptidases MER0491644
SK S41 S41.001 C-terminal processing peptidase-1 MER0288401 prc SSYM_0667
SK S49 unassigned subfamily S49B unassigned peptidases MER1068497 SYMBAF_100005/SYMBAF_30175
SK S49 unassigned subfamily S49B unassigned peptidases MER1070241 sohB
SK S49 unassigned subfamily S49B unassigned peptidases MER1067088 sohB
SK S49 unassigned subfamily S49B unassigned peptidases MER0298028 sppA SCc_450
SK S49 unassigned subfamily S49B unassigned peptidases MER0321331 SSYM_0779
SK S49 unassigned subfamily S49B unassigned peptidases MER0297860 sppA SSYM_1412
SS S66 unassigned family S66 unassigned peptidases MER1078153 SYMBAF_80042
ST S54 unassigned family S54 unassigned peptidases MER1075346 glpG

GENOME ANALYSIS: Comparison with 15 completely sequenced genomes from genus Serratia
Family Comment
A24 lineage specific expansion (4 homologues)
C26 significant decrease in homologues (7 homologues)
C56 significant decrease in homologues (2 homologues)
M103 significant decrease in homologues (1 homologues)
M15 significant decrease in homologues (1 homologues)
M16 significant decrease in homologues (1 homologues)
M20 significant decrease in homologues (5 homologues)
S6 significant presence (1 homologues)
S11 significant decrease in homologues (2 homologues)
S12 significant decrease in homologues (1 homologues)
S16 lineage specific expansion (6 homologues)
S24 lineage specific expansion (10 homologues)
S26 lineage specific expansion (4 homologues)
S49 lineage specific expansion (6 homologues)
S66 significant presence (1 homologues)
S78 significant presence (2 homologues)

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Page created 8-September-2023

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