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information

Runella slithyformis

Taxonomy
Taxonomy database identifier: 106
Superkingdom Bacteria
Phylum Bacteroidetes
Order Bacteriodales
Family Cytophagaceae
Genus Runella
Species slithyformis
Peptidase View peptidase sequences from Runella slithyformis
Count of known and putative peptidases: 171, non-peptidase homologues 42
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0347892 lspA Runsl_1930
AC A8 unassigned family A8 unassigned peptidases MER0251296 lspA Runsl_5595
AE A31 A31.005 hupW peptidase MER0251031 Runsl_5654
CA C1 unassigned subfamily C1B unassigned peptidases MER0428456 Runsl_0405
CA C1 unassigned subfamily C1B unassigned peptidases MER0252162 Runsl_4989
CA C10 unassigned family C10 unassigned peptidases MER0251338 Runsl_4013
CA C39 C39.001 bacteriocin-processing peptidase MER0302378 Runsl_0935
CA C39 C39.001 bacteriocin-processing peptidase MER0251087 Runsl_1985
CA C39 C39.001 bacteriocin-processing peptidase MER0252463 Runsl_2449
CA C39 C39.001 bacteriocin-processing peptidase MER0251115 Runsl_2467
CA C39 C39.001 bacteriocin-processing peptidase MER0302402 Runsl_4213
CA C39 C39.001 bacteriocin-processing peptidase MER0302519 Runsl_4391
CA C39 non-peptidase homologue family C39 non-peptidase homologues MER0716812 Runsl_2788
CA C51 unassigned family C51 unassigned peptidases MER0251561 Runsl_2083
CD C14 unassigned subfamily C14B unassigned peptidases MER0251520 Runsl_0403
CD C14 unassigned subfamily C14B unassigned peptidases MER0250727 Runsl_5205
CD C14 unassigned family C14 unassigned peptidases MER0251723 Runsl_2756
CD C25 C25.004 PG0026 peptidase (Porphyromonas-type) MER0252901 Runsl_2551
CD C25 unassigned family C25 unassigned peptidases MER0251231 Runsl_0603
CD C25 unassigned family C25 unassigned peptidases MER0251978 Runsl_3485
CO C40 unassigned family C40 unassigned peptidases MER0251335 Runsl_4056
CO C40 unassigned family C40 unassigned peptidases MER0251397 Runsl_4126
G- G5 unassigned family G5 unassigned peptidases MER0938564 Runsl_2674
G- G5 unassigned family G5 unassigned peptidases MER0911327 Runsl_3010
G- G5 unassigned family G5 unassigned peptidases MER0938549 Runsl_5138
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0293151 Runsl_4315
MA M1 unassigned family M1 unassigned peptidases MER0252045 Runsl_0246
MA M1 unassigned family M1 unassigned peptidases MER0252895 Runsl_1803
MA M1 unassigned family M1 unassigned peptidases MER0252816 Runsl_1839
MA M1 unassigned family M1 unassigned peptidases MER0250617 Runsl_1882
MA M1 unassigned family M1 unassigned peptidases MER0252241 Runsl_2145
MA M1 unassigned family M1 unassigned peptidases MER0250779 Runsl_2824
MA M1 unassigned family M1 unassigned peptidases MER0250753 Runsl_3423
MA M3 unassigned subfamily M3A unassigned peptidases MER0252786 Runsl_1954
MA M3 unassigned subfamily M3A unassigned peptidases MER0250748 Runsl_2308
MA M3 unassigned subfamily M3C unassigned peptidases MER0252868 Runsl_1383
MA M12 unassigned family M12 unassigned peptidases MER0251412 Runsl_5598
MA M13 unassigned family M13 unassigned peptidases MER0252256 Runsl_3231
MA M41 M41.A17 DDB_G0284249 g.p. (Dictyostelium discoideum) MER0251663 ftsH Runsl_3147
MA M43 unassigned subfamily M43A unassigned peptidases MER0251158 Runsl_1596
MA M43 unassigned subfamily M43B unassigned peptidases MER0251356 Runsl_2534
MA M43 unassigned subfamily M43B unassigned peptidases MER0251060 Runsl_5393
MA M48 unassigned subfamily M48C unassigned peptidases MER0251948 Runsl_1485
MA M48 unassigned subfamily M48C unassigned peptidases MER0252760 Runsl_4713
MA M48 unassigned subfamily M48C unassigned peptidases MER0251462 Runsl_5353
MA M56 unassigned family M56 unassigned peptidases MER0935078 Runsl_0377
MA M56 unassigned family M56 unassigned peptidases MER0934636 Runsl_3679
MA M56 unassigned family M56 unassigned peptidases MER0251207 Runsl_0911
MA M56 unassigned family M56 unassigned peptidases MER0252375 Runsl_3601
MA M61 unassigned family M61 unassigned peptidases MER0251760 Runsl_2382
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0836338 Runsl_5797
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0469337 Runsl_0828
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0252668 Runsl_0914
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0469334 Runsl_1798
MC M14 non-peptidase homologue subfamily M14B non-peptidase homologues MER0251136 Runsl_5636
MC M14 non-peptidase homologue subfamily M14D non-peptidase homologues MER0251064 Runsl_0364
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0250813 Runsl_0369
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0469366 Runsl_1825
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0252433 Runsl_3084
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0250671 Runsl_3132
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0252940 Runsl_3133
MC M14 unassigned subfamily M14A unassigned peptidases MER0382263 Runsl_0708
MD M15 unassigned subfamily M15D unassigned peptidases MER0251938 Runsl_2040
MD M15 unassigned subfamily M15D unassigned peptidases MER0252210 Runsl_2386
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0252657 Runsl_2406
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0252422 Runsl_4495
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0252656 Runsl_2406
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0252604 Runsl_4994
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0252675 Runsl_5010
ME M16 unassigned subfamily M16B unassigned peptidases MER0251675 Runsl_0667
ME M16 unassigned subfamily M16B unassigned peptidases MER0251365 Runsl_2106
ME M16 unassigned subfamily M16B unassigned peptidases MER0252674 Runsl_5010
ME M16 unassigned family M16 unassigned peptidases MER0252603 Runsl_4994
MF M17 unassigned family M17 unassigned peptidases MER0251048 pepA Runsl_3980
MG M24 unassigned subfamily M24A unassigned peptidases MER0252141 map Runsl_1680
MG M24 unassigned subfamily M24A unassigned peptidases MER0252682 map Runsl_2119
MG M24 unassigned subfamily M24B unassigned peptidases MER0251787 Runsl_5148
MG M24 unassigned subfamily M24B unassigned peptidases MER0252249 Runsl_5149
MH M20 non-peptidase homologue subfamily M20D non-peptidase homologues MER0374418 Runsl_0279
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0474986 Runsl_3929
MH M20 unassigned subfamily M20A unassigned peptidases MER0252620 Runsl_0401
MH M20 unassigned subfamily M20A unassigned peptidases MER0252556 Runsl_1043
MH M20 unassigned subfamily M20A unassigned peptidases MER0251679 Runsl_2665
MH M20 unassigned subfamily M20B unassigned peptidases MER0250955 Runsl_4358
MH M20 unassigned family M20D unassigned peptidases MER0372027 Runsl_0722
MH M20 unassigned family M20D unassigned peptidases MER0304258 Runsl_5578
MH M20 unassigned subfamily M20F unassigned peptidases MER0251263 Runsl_2593
MH M28 non-peptidase homologue subfamily M28E non-peptidase homologues MER0206466 Runsl_3431
MH M28 non-peptidase homologue family M28 non-peptidase homologues MER0252719 Runsl_5230
MH M28 unassigned subfamily M28A unassigned peptidases MER0195182 Runsl_2713
MH M28 unassigned subfamily M28A unassigned peptidases MER0194242 Runsl_4195
MH M28 unassigned subfamily M28B unassigned peptidases MER0251935 Runsl_1076
MH M28 unassigned subfamily M28D unassigned peptidases MER0251156 Runsl_1386
MH M28 unassigned family M28 unassigned peptidases MER0251266 Runsl_1462
MH M28 unassigned family M28 unassigned peptidases MER0321639 Runsl_2233
MH M28 unassigned family M28 unassigned peptidases MER0166631 Runsl_2914
MH M42 unassigned family M42 unassigned peptidases MER0250989 Runsl_2875
MJ M19 unassigned family M19 unassigned peptidases MER0251917 Runsl_1905
MJ M19 unassigned family M19 unassigned peptidases MER0471753 Runsl_4958
MJ M19 unassigned family M19 unassigned peptidases MER0252703 Runsl_5014
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0869825 Runsl_1892
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0872138 Runsl_1910
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0874816 Runsl_2296
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0858925 Runsl_3134
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0252661 Runsl_0210
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0296655
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0251945 Runsl_2028
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0250865 Runsl_5088
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0252580 Runsl_5575
MM M50 unassigned family M50 unassigned peptidases MER0898014 Runsl_5427
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0251468 Runsl_0816
MO M23 unassigned subfamily M23B unassigned peptidases MER0251889 Runsl_5828
MO M23 unassigned subfamily M23B unassigned peptidases MER0251812 Runsl_0198
MO M23 unassigned subfamily M23B unassigned peptidases MER0251915 Runsl_1419
MO M23 unassigned subfamily M23B unassigned peptidases MER0479094 Runsl_3653
MO M23 unassigned subfamily M23B unassigned peptidases MER0252307 Runsl_3925
MO M23 unassigned subfamily M23B unassigned peptidases MER0252930 Runsl_5969
MO M23 unassigned family M23 unassigned peptidases MER0480098 Runsl_2038
MU M103 M103.UNW family M103 non-peptidase homologues MER0251962 Runsl_4802
MU M103 M103.UPW family M103 unassigned peptidases MER0252617 Runsl_4803
PA S1 unassigned subfamily S1C unassigned peptidases MER0250984 Runsl_0807
PA S1 unassigned subfamily S1C unassigned peptidases MER0250999 Runsl_2854
PA S1 unassigned family S1 unassigned peptidases MER0252272 Runsl_1309
PA S46 S46.002 dipeptidyl-peptidase 11 (Porphyromonas gingivalis-type) MER0252347 Runsl_1727
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0251473 Runsl_4388
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0252228 glmS Runsl_0137
PB S45 S45.002 cephalosporin acylase precursor MER0252217 Runsl_0129
PB S45 S45.002 cephalosporin acylase precursor MER0252514 Runsl_0169
PB S45 S45.002 cephalosporin acylase precursor MER0252328 Runsl_0284
PB S45 S45.002 cephalosporin acylase precursor MER0251605 Runsl_3533
PB S45 S45.003 cephalosporin C acylase precursor MER0250622 Runsl_1180
PB S45 S45.003 cephalosporin C acylase precursor MER0252576 Runsl_5046
PB T1 unassigned subfamily T1B unassigned peptidases MER0252039 hslV Runsl_0231
PB T2 unassigned family T2 unassigned peptidases MER0252691 Runsl_2272
PB T2 unassigned family T2 unassigned peptidases MER0251516 Runsl_4261
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0252181 Runsl_1431
PB T3 T03.014 gamma-glutamyltransferase 2 (bacterial) MER0252184 Runsl_5470
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0252551 Runsl_2525
PC C26 C26.957 GMP synthase MER0252524 guaA Runsl_0587
PC C26 C26.964 CTP synthetase MER0449912 pyrG Runsl_3161
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0448035 Runsl_2023
PC C26 C26.A05 gamma-glutamyl peptidase 1 (Arabidopsis thaliana) MER0252612 Runsl_2419
PC C26 unassigned family C26 unassigned peptidases MER0251709 carA Runsl_1672
PC C26 unassigned family C26 unassigned peptidases MER0250830 hisH Runsl_3951
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0252147 Runsl_0262
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0251072 Runsl_5161
PC S51 S51.003 cyanophycinase MER0252128 Runsl_4260
PC S51 unassigned family S51 unassigned peptidases MER0252928 Runsl_4888
PE P1 unassigned family P01 unassigned peptidases MER0251423 Runsl_1621
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER0990099 Runsl_2168
SB S8 unassigned subfamily S8A unassigned peptidases MER0988713 Runsl_2167
SB S8 unassigned subfamily S8A unassigned peptidases MER0252314 Runsl_1099
SB S8 unassigned subfamily S8A unassigned peptidases MER0250916 Runsl_4090
SB S8 unassigned subfamily S8A unassigned peptidases MER0250605 Runsl_5150
SC S9 S09.010 oligopeptidase B MER0252808 Runsl_0016
SC S9 S09.010 oligopeptidase B MER0252630 Runsl_2201
SC S9 S09.021 glutamyl endopeptidase C MER0251738 Runsl_4354
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER1001599 Runsl_1105
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER0998372 Runsl_5744
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0251179 Runsl_1070
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0251180 Runsl_1070
SC S9 unassigned subfamily S9A unassigned peptidases MER0252142 Runsl_0277 Runsl_0277
SC S9 unassigned subfamily S9A unassigned peptidases MER0252374 Runsl_1481
SC S9 unassigned subfamily S9B unassigned peptidases MER0252218 Runsl_2417 Runsl_2417
SC S9 unassigned subfamily S9B unassigned peptidases MER0250673 Runsl_2784
SC S9 unassigned subfamily S9B unassigned peptidases MER0490888 Runsl_4189
SC S9 unassigned subfamily S9B unassigned peptidases MER0250644 Runsl_4225
SC S9 unassigned subfamily S9B unassigned peptidases MER0250931 Runsl_4712
SC S9 unassigned subfamily S9B unassigned peptidases MER0252804 Runsl_5037
SC S9 unassigned subfamily S9B unassigned peptidases MER0250733 Runsl_5614
SC S9 unassigned subfamily S9C unassigned peptidases MER1120464
SC S9 unassigned subfamily S9C unassigned peptidases MER0251138 Runsl_0831
SC S9 unassigned subfamily S9C unassigned peptidases MER0251298 Runsl_1041
SC S9 unassigned subfamily S9C unassigned peptidases MER0251254 Runsl_1087
SC S9 unassigned subfamily S9C unassigned peptidases MER0251002 Runsl_5435
SC S9 unassigned family S9 unassigned peptidases MER0250866 Runsl_0243
SC S9 unassigned family S9 unassigned peptidases MER0251126 Runsl_0870
SC S9 unassigned family S9 unassigned peptidases MER0250685 Runsl_0908
SC S9 unassigned family S9 unassigned peptidases MER0252495 Runsl_0923
SC S9 unassigned family S9 unassigned peptidases MER0477581 Runsl_2337
SC S9 unassigned family S9 unassigned peptidases MER0250894 Runsl_2747
SC S9 unassigned family S9 unassigned peptidases MER0252487 Runsl_3041
SC S9 unassigned family S9 unassigned peptidases MER0251221 Runsl_3613
SC S9 unassigned family S9 unassigned peptidases MER0252579 Runsl_4257
SC S10 unassigned family S10 unassigned peptidases MER0251184 Runsl_1034
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1022872 Runsl_2486
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1022982 Runsl_2337
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1025623 Runsl_4189
SC S15 unassigned family S15 unassigned peptidases MER1021497 Runsl_5744
SC S15 unassigned family S15 unassigned peptidases MER0252807 Runsl_1105
SC S33 S33.972 mesoderm specific transcript protein MER0251240 Runsl_4921
SC S33 S33.976 Williams-Beuren syndrome critical region protein 21 epoxide hydrolase MER0252151 Runsl_3713
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0251302 Runsl_5482
SC S33 unassigned family S33 unassigned peptidases MER0381177 Runsl_5674
SC S33 unassigned family S33 unassigned peptidases MER0250722 Runsl_0527
SC S33 unassigned family S33 unassigned peptidases MER0251564 Runsl_0646
SC S33 unassigned family S33 unassigned peptidases MER0251513 Runsl_1178
SC S33 unassigned family S33 unassigned peptidases MER0251633 Runsl_4543
SC S33 unassigned family S33 unassigned peptidases MER0251127 Runsl_4632
SC S33 unassigned family S33 unassigned peptidases MER0252359 Runsl_5367
SC S33 unassigned family S33 unassigned peptidases MER0251028 Runsl_5473
SC S82 unassigned family S82 unassigned homologues MER0206304
SE S11 unassigned family S11 unassigned peptidases MER0251853 Runsl_0006
SE S11 unassigned family S11 unassigned peptidases MER0251680 Runsl_3063
SE S11 unassigned family S11 unassigned peptidases MER0252330 Runsl_3159
SE S11 unassigned family S11 unassigned peptidases MER0252350 Runsl_3254
SE S11 unassigned family S11 unassigned peptidases MER0251046 Runsl_4456
SE S11 unassigned family S11 unassigned peptidases MER0250625 Runsl_5356
SE S12 S12.950 esterase EstB MER0252687 Runsl_1035
SE S12 S12.950 esterase EstB MER0252841 Runsl_1171
SE S12 S12.A23 GYO_0385 g.p. (Bacillus subtilis) MER0251433 Runsl_0942
SE S12 unassigned family S12 unassigned peptidases MER0251747 Runsl_5676
SE S12 unassigned family S12 unassigned peptidases MER0252170 Runsl_5677
SE S12 unassigned family S12 unassigned peptidases MER0252662 Runsl_0210
SE S12 unassigned family S12 unassigned peptidases MER0251868 Runsl_0549
SE S12 unassigned family S12 unassigned peptidases MER0420202 Runsl_0556
SE S12 unassigned family S12 unassigned peptidases MER0422059 Runsl_0557
SE S12 unassigned family S12 unassigned peptidases MER0252501 Runsl_1123
SE S12 unassigned family S12 unassigned peptidases MER0420142 Runsl_2016
SE S12 unassigned family S12 unassigned peptidases MER0252688 Runsl_2568
SE S12 unassigned family S12 unassigned peptidases MER0251204 Runsl_3062
SE S12 unassigned family S12 unassigned peptidases MER0251694 Runsl_3067
SE S12 unassigned family S12 unassigned peptidases MER0251227 Runsl_4787
SE S12 unassigned family S12 unassigned peptidases MER0250680 Runsl_5344
SE S12 unassigned family S12 unassigned peptidases MER0251234 Runsl_5807
SE S13 unassigned family S13 unassigned peptidases MER0356820 Runsl_2899
SF S24 S24.003 UmuD protein MER0252326 Runsl_3911
SF S24 S24.003 UmuD protein MER0252243 Runsl_5320
SF S26 unassigned subfamily S26A unassigned peptidases MER0333624 Runsl_5609
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0252931 Runsl_3824
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0250886 Runsl_3044
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0251172 Runsl_4262
SJ S16 unassigned family S16 unassigned peptidases MER0251130 lon Runsl_4856
SK S14 S14.001 peptidase Clp (type 1) MER0251251 clpP Runsl_2554
SK S41 S41.001 C-terminal processing peptidase-1 MER0251166 Runsl_2948
SK S41 S41.012 Pep putative peptidase (Vibrio-type) MER0251290 Runsl_2707
SK S41 S41.012 Pep putative peptidase (Vibrio-type) MER0250715 Runsl_3251
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER1061123 Runsl_3693
SK S41 unassigned subfamily S41A unassigned peptidases MER1055878 Runsl_0370
SK S41 unassigned subfamily S41A unassigned peptidases MER0252564 Runsl_0719
SK S41 unassigned subfamily S41A unassigned peptidases MER0252717 Runsl_2070
SK S41 unassigned subfamily S41B unassigned peptidases MER0251181 Runsl_1070
SK S49 unassigned subfamily S49B unassigned peptidases MER0252836 Runsl_0320
SK S49 unassigned subfamily S49B unassigned peptidases MER0300928 Runsl_5187
SS S66 S66.001 murein tetrapeptidase LD-carboxypeptidase (Pseudomonas-type) MER0251489 Runsl_5566
SS S66 unassigned family S66 unassigned peptidases MER0252693 Runsl_5501
ST S54 S54.025 At5g25752 rhomboid peptidase MER0251532 Runsl_2232
ST S54 unassigned family S54 unassigned peptidases MER1078542 Runsl_0822
ST S54 unassigned family S54 unassigned peptidases MER1080590 Runsl_0823

GENOME ANALYSIS: Comparison with 12 completely sequenced genomes from family Cytophagaceae
Family Comment
A31 significant presence (1 homologues)
C1 significant presence (2 homologues)
C10 significant presence (1 homologues)
C14 significant presence (3 homologues)
C39 lineage specific expansion (7 homologues)
C44 significant decrease in homologues (2 homologues)
C51 significant presence (1 homologues)
M103 significant decrease in homologues (2 homologues)
M12 significant presence (1 homologues)
M13 significant presence (1 homologues)
M14 lineage specific expansion (12 homologues)
M20 lineage specific expansion (9 homologues)
M23 lineage specific expansion (8 homologues)
M50 significant decrease in homologues (1 homologues)
S10 significant presence (1 homologues)
S11 significant presence (6 homologues)
S12 lineage specific expansion (17 homologues)
S15 lineage specific expansion (5 homologues)
S16 lineage specific expansion (4 homologues)
S45 lineage specific expansion (6 homologues)
S46 significant presence (1 homologues)
S51 significant presence (2 homologues)

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