Structure for peptidase M38.001: isoaspartyl dipeptidase (metallo-type)

Summary Alignment Tree Sequences Sequence features Distribution Structure Literature Substrates

 

PDB Organism Resolution Comment
1ONW Escherichia coli 1.65 Å mature
One molecule of the homodimer is shown. The catalytic zinc ions are shown as light grey CPK spheres. The zinc ligands are shown in ball-and-stick representation: His68, His70, Lys162, His201 and His230 in purple. The catalytic Asp285 is shown in pink.
This browser does not have a Java Plug-in.
Get the latest Java Plug-in here.
Show surface
TERTIARY STRUCTURE DATA
Comment Resolution PDB PDBe SCOP CATH PDBSum Proteopedia Reference
Escherichia coli
mature  peptidase 1.65 Å 1ONW 1ONW 1ONW 1ONW 1ONW 1ONW Thoden et al., 2003
complex with aspartate 2.10 Å 1ONX 1ONX 1ONX 1ONX 1ONX 1ONX Thoden et al., 2003
mature  peptidase 2.00 Å 1PO9 1PO9 1PO9 1PO9 1PO9 1PO9 Jozic et al., 2003
complex with inhibitor 2-[[(1S)-1-amino-2-carboxyethyl](dihydroxy)phosphoranyl]methyl-4-methylpentanoic acid 3.30 Å 1POJ 1POJ 1POJ 1POJ 1POJ 1POJ Jozic et al., 2003
mature  peptidase 2.70 Å 1POK 1POK 1POK 1POK 1POK 1POK Jozic et al., 2003
Asp285Asn mutant; complex with beta-aspartylhistidine 2.00 Å 1YBQ 1YBQ 1YBQ 1YBQ 1YBQ 1YBQ Marti-Arbona et al., 2005
Glu77Glu mutant 1.95 Å 2AQO 2AQO 2AQO 2AQO 2AQO 2AQO Marti-Arbona et al., 2005
Tyr137Phe mutant 1.95 Å 2AQV 2AQV 2AQV 2AQV 2AQV 2AQV Marti-Arbona et al., 2005
three tetrameric rings of isoaspartyl dipeptidase fitted in an em volume. 10.50 Å 5LP3 5LP3 5LP3 5LP3 5LP3 5LP3