Assemblies
Assembly Name:
RNA polymerase sigma factor RpoD
Multimeric state:
hetero hexamer
Accessible surface area:
158097.36 Å2
Buried surface area:
37478.25 Å2
Dissociation area:
2,757.4
Å2
Dissociation energy (ΔGdiss):
4.88
kcal/mol
Dissociation entropy (TΔSdiss):
16.04
kcal/mol
Symmetry number:
1
PDBe Complex ID:
PDB-CPX-132738
Assembly Name:
RNA polymerase sigma factor RpoD
Multimeric state:
hetero hexamer
Accessible surface area:
163614.76 Å2
Buried surface area:
38090.1 Å2
Dissociation area:
2,744.02
Å2
Dissociation energy (ΔGdiss):
4.65
kcal/mol
Dissociation entropy (TΔSdiss):
16.05
kcal/mol
Symmetry number:
1
PDBe Complex ID:
PDB-CPX-132738
Macromolecules
Chains: A, B, G, H
Length: 239 amino acids
Theoretical weight: 26.46 KDa
Source organism: Escherichia coli DH1
Expression system: Escherichia coli
Length: 239 amino acids
Theoretical weight: 26.46 KDa
Source organism: Escherichia coli DH1
Expression system: Escherichia coli
- RNA polymerase, RBP11-like subunit
- DNA-directed RNA polymerase, RpoA/D/Rpb3-type
- DNA-directed RNA polymerase, alpha subunit
- DNA-directed RNA polymerase, insert domain superfamily
- DNA-directed RNA polymerase, insert domain
Chains: C, I
Length: 1342 amino acids
Theoretical weight: 150.82 KDa
Source organism: Escherichia coli DH1
Expression system: Escherichia coli
Length: 1342 amino acids
Theoretical weight: 150.82 KDa
Source organism: Escherichia coli DH1
Expression system: Escherichia coli
- DNA-directed RNA polymerase beta subunit, bacterial-type
- RNA polymerase, beta subunit, protrusion
- DNA-directed RNA polymerase, subunit 2
- RNA polymerase Rpb2, domain 2
- RNA polymerase Rpb2, domain 2 superfamily
- RNA polymerase Rpb2, domain 3
- DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily
- DNA-directed RNA polymerase, beta subunit, external 1 domain
- DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
- RNA polymerase Rpb2, OB-fold
- DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
- RNA polymerase, beta subunit, conserved site
- RNA polymerase Rpb2, domain 7
- RNA polymerase Rpb2, domain 2
- DNA-directed RNA polymerase, beta subunit, external 1 domain
- DNA-directed RNA polymerase, subunit 2, domain 6
- OB fold (Dihydrolipoamide Acetyltransferase, E2P)
- OB fold (Dihydrolipoamide Acetyltransferase, E2P)
- Helix Hairpins
- Rna Polymerase Beta Subunit; Chain: C,domain 2
Chains: D, J
Length: 1407 amino acids
Theoretical weight: 155.37 KDa
Source organism: Escherichia coli BW2952
Expression system: Escherichia coli
Length: 1407 amino acids
Theoretical weight: 155.37 KDa
Source organism: Escherichia coli BW2952
Expression system: Escherichia coli
- RNA polymerase Rpb1, clamp domain superfamily
- DNA-directed RNA polymerase, subunit beta-prime, bacterial type
- RNA polymerase Rpb1, domain 1
- DNA-directed RNA polymerase, subunit beta-prime
- RNA polymerase, N-terminal
- RNA polymerase, alpha subunit
- RNA polymerase Rpb1, domain 3
- RNA polymerase Rpb1, domain 3 superfamily
- RNA polymerase Rpb1, funnel domain superfamily
- RNA polymerase Rpb1, domain 4
- RNA polymerase Rpb1, domain 5
Chains: E, K
Length: 91 amino acids
Theoretical weight: 10.25 KDa
Source organism: Escherichia coli DH1
Expression system: Escherichia coli
Length: 91 amino acids
Theoretical weight: 10.25 KDa
Source organism: Escherichia coli DH1
Expression system: Escherichia coli
- DNA-directed RNA polymerase, omega subunit
- RPB6/omega subunit-like superfamily
- RNA polymerase, subunit omega/Rpo6/RPB6
Chains: F, L
Length: 613 amino acids
Theoretical weight: 70.35 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
Pfam:
Length: 613 amino acids
Theoretical weight: 70.35 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
- Canonical:
P00579 (Residues: 1-613; Coverage: 100%)
Pfam:
- Sigma-70 factor, region 1.1
- Sigma-70 factor, region 1.2
- Sigma-70, non-essential region
- Sigma-70 region 2
- Sigma-70 region 3
- Sigma-70, region 4
- Sigma-70 factor, region 1.1 superfamily
- RNA polymerase sigma factor 70, region 1.1
- RNA polymerase sigma factor RpoD
- RNA polymerase sigma-70 region 1.2
- RNA polymerase sigma factor, region 2
- RNA polymerase sigma factor 70, non-essential domain
- RNA polymerase sigma factor RpoD, C-terminal
- RNA polymerase sigma-70-like domain
- RNA polymerase sigma-70 region 2
- RNA polymerase sigma-70
- RNA polymerase sigma factor, region 3/4-like
- Winged helix-like DNA-binding domain superfamily
- RNA polymerase sigma-70 region 3
- RNA polymerase sigma-70 region 4
