› › Structure analysis

CpOGA D298N in complex with Drosophila HCF -derived Thr-O-GlcNAc peptide

X-ray diffraction
2.6Å resolution
PDB entry 4zxl coloured by chain, front view.
PDB entry 4zxl coloured by chain, side view.
PDB entry 4zxl coloured by chain, top view.
Source organisms:
Assembly composition:
hetero dimer (preferred)
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: O-GlcNAcase NagJ and peptide
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Multimeric state: hetero dimer
Accessible surface area: 24149.84 Å2
Buried surface area: 2669.03 Å2
Dissociation area: 437.49 Å2
Dissociation energy (ΔGdiss): -4.27 kcal/mol
Dissociation entropy (TΔSdiss): 5.67 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-165416

Macromolecules

NAG-PRO-SER-THR-ALA-Thr-O-GlcNAc containing peptide from drosophila HCF
Chain: H
Length: 4 amino acids
Theoretical weight: 374 Da
Source organism: Drosophila melanogaster
Expression system: Not provided
NAG-PRO-SER-THR-ALA-Thr-O-GlcNAc containing peptide from drosophila HCF in PDB entry 4zxl, assembly 1, front view.
NAG-PRO-SER-THR-ALA-Thr-O-GlcNAc containing peptide from drosophila HCF in PDB entry 4zxl, assembly 1, side view.
NAG-PRO-SER-THR-ALA-Thr-O-GlcNAc containing peptide from drosophila HCF in PDB entry 4zxl, assembly 1, top view.
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O-GlcNAcase NagJ
Chain: A
Length: 579 amino acids
Theoretical weight: 65.1 KDa
Source organism: Clostridium perfringens ATCC 13124
Expression system: Escherichia coli
UniProt:
  • Canonical: Q0TR53 (Residues: 39-617; Coverage: 60%)
Gene names: CPF_1442, nagJ
Pfam:
InterPro:
CATH:
O-GlcNAcase NagJ in PDB entry 4zxl, assembly 1, front view.
O-GlcNAcase NagJ in PDB entry 4zxl, assembly 1, side view.
O-GlcNAcase NagJ in PDB entry 4zxl, assembly 1, top view.
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