News
wwPDB News: PDB entries with new ligands only in PDBx/mmCIF format
At current growth rates, we anticipate running out of three-character Chemical Component IDs by the end of 2023. After this point, the wwPDB will issue five-character alphanumeric accession codes for CCD IDs in the OneDep system. |
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PDB Art Virtual Exhibition 2023 - Opening Event
Protein Data Bank in Europe (PDBe) are hosting an online art exhibition to celebrate artwork created through the PDB Art project in 2023. This virtual event, on Tuesday 19th September 2023 at 5:00pm BST, will mark the official opening of the 2023 virtual exhibition. |
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Introducing ‘Covalently Linked Components’ and enriched ligand information at PDBe
We have introduced Covalently Linked Components (CLCs), a new class of reference small molecules simplifying the identification of multi-component ligands in PDB entries, plus we have enhanced the content of wwPDB CCD and PRD files with valuable meta-data. |
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PDBImages: A new, open-source macromolecular structure imaging pipeline
The PDBe team, in collaboration with David Sehnal (NCBR, Masaryk University, Czech Republic), has developed a new pipeline for generating images of macromolecular structures. |
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3D-Beacons update: Search for structural models by protein sequence
The 3D-Beacons resource has undergone some major improvements, including updates to the API and a new sequence search feature. |
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wwPDB news: Updated Annotation and Standardization of Peptide Residues
In October 2023, wwPDB will roll out updated CCD data files with additional annotation and standardized atom naming of peptide residues. |
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Illuminating protein conformational landscapes in the PDB archive
The PDBe team is excited to announce the release of a groundbreaking scientific data pipeline to identify protein conformational states in the Protein Data Bank (PDB). |
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wwPDB News - 20 Years of the wwPDB and PDBc associate member
Celebrating 20 years of the wwPDB consortium and announcing the launch of Protein Data Bank China (PDBc) as an Associate Member of the Partnership. |
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wwPDB News - NMR restraint remediation conforms to standard NMR-STAR and NEF format
Standardized NMR data files and updated validation reports are now available for existing NMR entries |
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wwPDB news: NMR restraint remediation conforms to standard NMR-STAR and NEF format
NMR data files are standardized in NEF and NMR-STAR format [Ulrich, 2019] for the PDB entries which have NMR data in many different software specific formats. |
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Improved macromolecular interactions data with PISA-lite
An updated version of PISA generates new and enhanced interactions data for all annotated assemblies in the PDB archive, available from the PDBe API and FTP. |
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A new process for aggregating and naming assemblies in the PDB
PDBe has created a new process to aggregate and name assemblies in the PDB based on unique assembly composition. |