Index of Organisms
Organisms names highlighted are those for which the genomes have been completely sequenced. Total number of organisms in which peptidases have been classified is 8623. Statistics for peptidases in the completed genomes can be seen here.
| ORGANISM | ||
|---|---|---|
| NAME | MAIN NAME | Counts of known and putative peptidases, and homologues |
| Daboia russelii | Daboia russellii | 3, 0 |
| Daboia russelii russelii | Daboia russellii | 3, 0 |
| Daboia russelli | Daboia russellii | 3, 0 |
| Daboia russelli siamensis | Daboia russellii | 3, 0 |
| Daboia russellii | Daboia russellii | 3, 0 |
| Daboia russellii russellii | Daboia russellii | 3, 0 |
| Daboia russellii siamensis | Daboia russellii | 3, 0 |
| Dacryopinax sp. DJM-731 SS1 | Dacryopinax sp. DJM-731 SS1 | 1, 0 |
| Dactylaria parvispora | Dactylaria parvispora | 1, 0 |
| Dactylella shizishanna | Dactylella shizishanna | 1, 0 |
| Dactylella varietas | Dactylella varietas | 1, 0 |
| Dactylis glomerata | Dactylis glomerata | 2, 1 |
| Dacus oleae | Bactrocera oleae | 1, 2 |
| daffodil | Narcissus pseudonarcissus | 5, 3 |
| Dahlia common mosaic virus | Dahlia common mosaic virus | 1, 0 |
| dahlia mosaic virus | dahlia mosaic virus | 2, 1 |
| Dahlia mosaic virus D10 | dahlia mosaic virus | 2, 1 |
| Dahlia mosaic virus-Holland | dahlia mosaic virus | 2, 1 |
| Dakar bat virus | Dakar bat virus | 1, 0 |
| Daltons mouse | Praomys daltoni | 1, 0 |
| Daltons Praomys | Praomys daltoni | 1, 0 |
| Danaus (Danaus) plexippus | Danaus plexippus | 229, 49 |
| Danaus plexippus | Danaus plexippus | 229, 49 |
| Danaus plexippus plexippus | Danaus plexippus | 229, 49 |
| dandelion | Taraxacum officinale | 1, 0 |
| Danio aequipinnatus | Danio aequipinnatus | 1, 0 |
| Danio aff. albolineatus | Danio albolineatus | 1, 0 |
| Danio aff. tweediei | Danio cf. tweediei | 2, 0 |
| Danio albolineatus | Danio albolineatus | 1, 0 |
| Danio albolineatus (Blyth, 1860) | Danio albolineatus | 1, 0 |
| Danio cf. tweediei | Danio cf. tweediei | 2, 0 |
| Danio devario | Danio devario | 2, 0 |
| Danio frankei | Danio frankei | 2, 0 |
| Danio kerri | Danio kerri | 4, 0 |
| Danio kerri Smith, 1931 | Danio kerri | 4, 0 |
| Danio malabaricus | Danio malabaricus | 1, 0 |
| Danio pathirana | Danio pathirana | 2, 0 |
| Danio pulcher | Danio pulcher | 2, 0 |
| Danio pulcher Smith 1931 | Danio pulcher | 2, 0 |
| Danio rerio | Danio rerio | 614, 157 |
| Danio rerio (Hamilton, 1822) | Danio rerio | 614, 157 |
| Danio rerio endogenous retrovirus ZFERV | Danio rerio endogenous retrovirus ZFERV | 1, 0 |
| Danio rerio frankei | Danio frankei | 2, 0 |
| danio, barred | Danio pathirana | 2, 0 |
| danio, giant | Danio aequipinnatus | 1, 0 |
| danio, Kerr’s | Danio kerri | 4, 0 |
| danio, leopard | Danio frankei | 2, 0 |
| daphne leaf distortion S virus | Daphne virus S | 1, 0 |
| Daphne mosaic virus | Daphne mosaic virus | 5, 0 |
| Daphne virus S | Daphne virus S | 1, 0 |
| Daphne virus Y | Daphne virus Y | 2, 0 |
| Daphnia arenata | Daphnia arenata | 7, 0 |
| Daphnia magna | Daphnia magna | 2, 0 |
| Daphnia parvula | Daphnia parvula | 8, 0 |
| Daphnia pulex | Daphnia pulex | 397, 66 |
| dark sword grass moth | Agrotis ipsilon | 8, 0 |
| Darmtuberculose | Mycobacterium paratuberculosis | 3, 1 |
| Darwins termite | Mastotermes darwiniensis | 0, 2 |
| dasheen | Colocasia esculenta | 1, 0 |
| Dasheen mosaic potyvirus | Dasheen mosaic virus | 3, 0 |
| dasheen mosaic potyvirus DMV | Dasheen mosaic virus | 3, 0 |
| Dasheen mosaic virus | Dasheen mosaic virus | 3, 0 |
| dasheen mosaic virus DMV | Dasheen mosaic virus | 3, 0 |
| Dasymys rufulus | Dasymys rufulus | 1, 0 |
| Dasypogon bromeliifolius | Dasypogon bromeliifolius | 1, 0 |
| Dasypus novemcinctus | Dasypus novemcinctus | 464, 174 |
| date palm | Phoenix dactylifera | 3, 0 |
| Datura stramonium | Datura stramonium | 1, 0 |
| Daubenton’s bat | Myotis daubentoni | 1, 0 |
| Daubentons bat | Myotis daubentoni | 1, 0 |
| Daucus carota | Daucus carota | 11, 1 |
| Daucus carota L. | Daucus carota | 11, 1 |
| Daucus carota subsp. sativus | Daucus carota | 11, 1 |
| Davidia involucrata | Davidia involucrata | 1, 0 |
| Davidiella tassiana | Davidiella tassiana | 1, 0 |
| day lily | Hemerocallis sp. | 3, 0 |
| daylily | Hemerocallis sp. | 3, 0 |
| deadly nightshade | Atropa belladonna | 1, 0 |
| Debaryomyces hansenii | Debaryomyces hansenii | 152, 65 |
| Debaryomyces hansenii CBS767 | Debaryomyces hansenii | 152, 65 |
| Debaryomyces hansenii var. hansenii | Debaryomyces hansenii | 152, 65 |
| Debaryomyces neoformans | Cryptococcus neoformans | 142, 80 |
| Dechloromonas aromatica | Dechloromonas aromatica | 72, 10 |
| Dechloromonas aromatica RCB | Dechloromonas aromatica | 72, 10 |
| Dechlorosoma suillum | Azospira oryzae | 71, 18 |
| Dechlorosoma suillum PS | Azospira oryzae | 71, 18 |
| deepsea smelt | Glossanodon semifasciatus | 4, 0 |
| deer tick | Ixodes scapularis | 309, 203 |
| deer tick virus | deer tick virus | 1, 0 |
| deer, white-tailed | Odocoileus virginianus | 6, 2 |
| Deerpox virus | Mule deer poxvirus | 3, 0 |
| Deerpox virus W-1170-84 | Mule deer poxvirus | 3, 0 |
| Deerpox virus W-848-83 | Mule deer poxvirus | 3, 0 |
| defective nucleopolyhedrovirus, Choristoneura fumiferana | Choristoneura fumiferana defective nucleopolyhedrovirus | 1, 0 |
| Deferribacter desulfuricans | Deferribacter desulfuricans | 46, 27 |
| Deferribacter desulfuricans SSM1 | Deferribacter desulfuricans | 46, 27 |
| degu | Octodon degus | 1, 0 |
| Dehalococcoides ethenogenes | Dehalococcoides ethenogenes | 41, 8 |
| Dehalococcoides ethenogenes 195 | Dehalococcoides ethenogenes | 41, 8 |
| Dehalococcoides mccartyi | Dehalococcoides ethenogenes | 41, 8 |
| Dehalococcoides mccartyi BAV1 | Dehalococcoides sp. BAV1 | 30, 3 |
| Dehalococcoides mccartyi BTF08 | Dehalococcoides ethenogenes | 41, 8 |
| Dehalococcoides mccartyi CBDB1 | Dehalococcoides sp. CBDB1 | 39, 8 |
| Dehalococcoides mccartyi DCMB5 | Dehalococcoides ethenogenes | 41, 8 |
| Dehalococcoides mccartyi GT | Dehalococcoides sp. GT | 36, 15 |
| Dehalococcoides mccartyi GY50 | Dehalococcoides ethenogenes | 41, 8 |
| Dehalococcoides mccartyi IBARAKI | Dehalococcoides ethenogenes | 41, 8 |
| Dehalococcoides mccartyi VS | Dehalococcoides sp. VS | 54, 21 |
| Dehalococcoides sp. BAV1 | Dehalococcoides sp. BAV1 | 30, 3 |
| Dehalococcoides sp. CBDB1 | Dehalococcoides sp. CBDB1 | 39, 8 |
| Dehalococcoides sp. GT | Dehalococcoides sp. GT | 36, 15 |
| Dehalococcoides sp. VS | Dehalococcoides sp. VS | 54, 21 |
| Dehalogenimonas lykanthroporepellens | Dehalogenimonas lykanthroporepellens | 21, 2 |
| Dehalogenimonas lykanthroporepellens BL-DC-9 | Dehalogenimonas lykanthroporepellens | 21, 2 |
| Deinagkistrodon acutus | Deinagkistrodon acutus | 21, 0 |
| Deinagkistrodon acutus (Gunther, 1888) | Deinagkistrodon acutus | 21, 0 |
| Deinococcus deserti | Deinococcus deserti | 162, 46 |
| Deinococcus deserti VCD115 | Deinococcus deserti | 162, 46 |
| Deinococcus geothermalis | Deinococcus geothermalis | 78, 17 |
| Deinococcus geothermalis DSM 11300 | Deinococcus geothermalis | 78, 17 |
| Deinococcus gobiensis | Deinococcus gobiensis | 39, 8 |
| Deinococcus gobiensis I-0 | Deinococcus gobiensis | 39, 8 |
| Deinococcus maricopensis | Deinococcus maricopensis | 119, 31 |
| Deinococcus maricopensis DSM 21211 | Deinococcus maricopensis | 119, 31 |
| Deinococcus proteolyticus | Deinococcus proteolyticus | 68, 23 |
| Deinococcus proteolyticus MRP | Deinococcus proteolyticus | 68, 23 |
| Deinococcus radiodurans | Deinococcus radiodurans | 109, 34 |
| Deinococcus radiodurans R1 | Deinococcus radiodurans | 109, 34 |
| Dekkera bruxellensis | Dekkera bruxellensis | 51, 2 |
| Dekkera bruxellensis AWRI1499 | Dekkera bruxellensis | 51, 2 |
| Delacroixia coronata | Conidiobolus coronatus | 1, 0 |
| Delftia acidovorans | Delftia acidovorans | 86, 20 |
| Delftia acidovorans CCUG 15835 | Delftia acidovorans | 86, 20 |
| Delftia acidovorans CCUG 274B | Delftia acidovorans | 86, 20 |
| Delftia acidovorans SPH-1 | Delftia acidovorans | 86, 20 |
| Delftia sp. AN3 | Delftia sp. AN3 | 1, 0 |
| Delftia sp. Cs1-4 | Delftia sp. Cs1-4 | 109, 34 |
| Delftia tsuruhatensis | Delftia tsuruhatensis | 1, 0 |
| Delia antiqua | Delia antiqua | 1, 0 |
| Delia coarctata | Delia coarctata | 2, 0 |
| Delia radicum | Delia radicum | 1, 0 |
| Delma borea | Delma borea | 1, 0 |
| Delphinapterus leucas | Delphinapterus leucas | 1, 0 |
| Delphinium vein-clearing virus | Delphinium vein-clearing virus | 0, 1 |
| Delphinus capensis | Delphinus capensis | 1, 0 |
| delta proteobacterium Hxd3 | Desulfococcus oleovorans | 70, 12 |
| delta proteobacterium MLMS-1 | delta proteobacterium MLMS-1 | 50, 13 |
| delta proteobacterium NaphS2 | delta proteobacterium NaphS2 | 46, 7 |
| delta smelt | Hypomesus transpacificus | 1, 0 |
| deltacoronavirus, porcine | Porcine coronavirus HKU15 | 1, 0 |
| Demansia atra | Demansia vestigiata | 4, 0 |
| Demansia vestigiata | Demansia vestigiata | 4, 0 |
| Dendrobium hybrid cultivar | Dendrobium hybrid cultivar | 1, 0 |
| Dendrocalamopsis edulis | Phyllostachys edulis | 1, 0 |
| Dendrocalamopsis oldhami | Bambusa oldhamii | 1, 0 |
| Dendrocalamopsis oldhamii | Bambusa oldhamii | 1, 0 |
| Dendrocalamopsis oldhamii (Munro) Keng f. | Bambusa oldhamii | 1, 0 |
| Dendrocalamus latiflorus | Dendrocalamus latiflorus | 1, 0 |
| Dendrocalamus latiflorus Munro | Dendrocalamus latiflorus | 1, 0 |
| Dendroctonus ponderosae | Dendroctonus ponderosae | 65, 8 |
| Dendrolimus punctatus tetravirus | Dendrolimus punctatus tetravirus | 1, 0 |
| dengue 2 virus DEN-2 | dengue virus type 2 | 2, 0 |
| dengue 3 virus | dengue virus type 3 | 14, 0 |
| dengue type 1 D1 virus | dengue virus type 1 | 3, 0 |
| dengue type 4 virus DEN4 | dengue virus type 4 | 1, 0 |
| Dengue virus | Dengue virus | 22, 1 |
| Dengue virus 1 | Dengue virus | 22, 1 |
| Dengue virus 1 Brazil/97-11/1997 | Dengue virus | 22, 1 |
| Dengue virus 1 Nauru/West Pac/1974 | Dengue virus | 22, 1 |
| Dengue virus 2 | Dengue virus | 22, 1 |
| Dengue virus 2 16681-PDK53 | Dengue virus | 22, 1 |
| Dengue virus 2 Jamaica/1409/1983 | Dengue virus | 22, 1 |
| Dengue virus 2 Puerto Rico/PR159-S1/1969 | Dengue virus | 22, 1 |
| Dengue virus 2 Thailand/0168/1979 | Dengue virus | 22, 1 |
| Dengue virus 2 Thailand/16681/84 | Dengue virus | 22, 1 |
| Dengue virus 2 Thailand/NGS-C/1944 | Dengue virus | 22, 1 |
| Dengue virus 2 Tonga/EKB194/1974 | Dengue virus | 22, 1 |
| Dengue virus 3 | dengue virus type 3 | 14, 0 |
| dengue virus 3 | dengue virus type 3 | 14, 0 |
| Dengue virus 3 China/80-2/1980 | Dengue virus | 22, 1 |
| Dengue virus 3 Martinique/1243/1999 | Dengue virus | 22, 1 |
| Dengue virus 3 Philippines/H87/1956 | Dengue virus | 22, 1 |
| Dengue virus 3 Singapore/8120/1995 | Dengue virus | 22, 1 |
| Dengue virus 4 | Dengue virus | 22, 1 |
| Dengue virus 4 Dominica/814669/1981 | Dengue virus | 22, 1 |
| Dengue virus 4 Philippines/H241/1956 | Dengue virus | 22, 1 |
| Dengue virus 4 Singapore/8976/1995 | Dengue virus | 22, 1 |
| Dengue virus 4 Thailand/0476/1997 | Dengue virus | 22, 1 |
| dengue virus type 1 | dengue virus type 1 | 3, 0 |
| dengue virus type 1 DEN1 | dengue virus type 1 | 3, 0 |
| dengue virus type 2 | dengue virus type 2 | 2, 0 |
| Dengue virus type 2 (strain Tonga 1974) | Dengue virus | 22, 1 |
| Dengue virus type 2 Thailand/0168/1979 | Dengue virus | 22, 1 |
| Dengue virus type 2 vector p2 | Dengue virus type 2 vector p2 | 1, 0 |
| Dengue virus type 2 vector p2(delta30) | Dengue virus type 2 vector p2(delta30) | 1, 0 |
| dengue virus type 3 | dengue virus type 3 | 14, 0 |
| Dengue virus type 3 Singapore/8120/1995 | Dengue virus | 22, 1 |
| dengue virus type 4 | dengue virus type 4 | 1, 0 |
| Dengue virus type 4 Philippines/H241/1956 | Dengue virus | 22, 1 |
| Dengue virus type 4 Singapore/8976/1995 | Dengue virus | 22, 1 |
| Dengue virus type 4 Thailand/0348/1991 | Dengue virus | 22, 1 |
| Dengue virus type 4 Thailand/0476/1997 | Dengue virus | 22, 1 |
| dengue virus type I | dengue virus type 1 | 3, 0 |
| Dengue virus type II | dengue virus type 2 | 2, 0 |
| dengue virus-1 DEN-1 | dengue virus type 1 | 3, 0 |
| dengue-2 virus | dengue virus type 2 | 2, 0 |
| Denitrobacillus licheniformis | Bacillus licheniformis | 153, 36 |
| Denitrovibrio acetiphilus | Denitrovibrio acetiphilus | 58, 34 |
| Denitrovibrio acetiphilus DSM 12809 | Denitrovibrio acetiphilus | 58, 34 |
| Denitrovibrio acetiphilus N2460 | Denitrovibrio acetiphilus | 58, 34 |
| deodar cedar | Cedrus deodara | 1, 0 |
| Dermacentor andersoni | Dermacentor andersoni | 0, 1 |
| Dermacentor reticulatus | Dermacentor reticulatus | 0, 1 |
| Dermacentor variabilis | Dermacentor variabilis | 8, 6 |
| Dermacentroxenus murinus | Rickettsia akari | 31, 3 |
| Dermacentroxenus rickettsii | Rickettsia rickettsii | 40, 1 |
| Dermacentroxenus typhi | Rickettsia typhi | 30, 5 |
| Dermacoccus sp. Ellin185 | Dermacoccus sp. Ellin185 | 30, 5 |
| dermal sarcoma virus, walleye | walleye dermal sarcoma virus | 1, 1 |
| Dermanyssus gallinae | Dermanyssus gallinae | 2, 0 |
| Dermanyssus gallinae (DeGeer, 1778) | Dermanyssus gallinae | 2, 0 |
| Dermasterias imbricata | Dermasterias imbricata | 2, 0 |
| Dermatophagoides farinae | Dermatophagoides farinae | 5, 2 |
| Dermatophagoides farinae Hughes, 1961 | Dermatophagoides farinae | 5, 2 |
| Dermatophagoides microceras | Dermatophagoides microceras | 1, 0 |
| Dermatophagoides pteronyssina | Dermatophagoides pteronyssinus | 8, 0 |
| Dermatophagoides pteronyssinnus | Dermatophagoides pteronyssinus | 8, 0 |
| Dermatophagoides pteronyssinus | Dermatophagoides pteronyssinus | 8, 0 |
| Dermatophilaceae bacterium Aji5-31 | Mobilicoccus pelagius | 36, 9 |
| Dermatophilus chelonae | Austwickia chelonae | 2, 0 |
| Dermatophilus congolensis | Dermatophilus congolensis | 1, 1 |
| Dermatophilus dermatonomus | Dermatophilus congolensis | 1, 1 |
| Dermatophilus pedis | Dermatophilus congolensis | 1, 1 |
| Dermatophylus congolense | Dermatophilus congolensis | 1, 1 |
| Dermestes frischii | Dermestes frischii | 1, 0 |
| Dermestes frischii Kugelann, 1792 | Dermestes frischii | 1, 0 |
| desert locust | Schistocerca gregaria | 1, 1 |
| desert spadefoot toad | Spea multiplicata | 0, 1 |
| Desmodus rotundus | Desmodus rotundus | 3, 0 |
| Desmonostoc muscorum | Nostoc muscorum | 1, 0 |
| Desmospora sp. 8437 | Desmospora sp. 8437 | 64, 10 |
| dessert bananas | Musa acuminata | 7, 1 |
| destroying angel | Amanita virosa | 0, 1 |
| Desulfallas gibsoniae | Desulfotomaculum gibsoniae | 58, 4 |
| Desulfarculus baarsii | Desulfarculus baarsii | 70, 27 |
| Desulfarculus baarsii DSM 2075 | Desulfarculus baarsii | 70, 27 |
| Desulfatibacillum alkenivorans | Desulfatibacillum alkenivorans | 115, 56 |
| Desulfatibacillum alkenivorans AK-01 | Desulfatibacillum alkenivorans | 115, 56 |
| Desulfatibacillum alkenivorans DSM 16219 | Desulfatibacillum alkenivorans | 115, 56 |
| Desulfitobacterium dehalogenans | Desulfitobacterium dehalogenans | 67, 6 |
| Desulfitobacterium dehalogenans ATCC 51507 | Desulfitobacterium dehalogenans | 67, 6 |
| Desulfitobacterium dichloroeliminans | Desulfitobacterium dichloroeliminans | 52, 7 |
| Desulfitobacterium dichloroeliminans LMG P-21439 | Desulfitobacterium dichloroeliminans | 52, 7 |
| Desulfitobacterium frappieri | Desulfitobacterium hafniense | 197, 76 |
| Desulfitobacterium hafniense | Desulfitobacterium hafniense | 197, 76 |
| Desulfitobacterium hafniense DCB-2 | Desulfitobacterium hafniense | 197, 76 |
| Desulfitobacterium hafniense DP7 | Desulfitobacterium hafniense | 197, 76 |
| Desulfitobacterium hafniense Y51 | Desulfitobacterium hafniense | 197, 76 |
| Desulfitobacterium metallireducens | Desulfitobacterium metallireducens | 54, 7 |
| Desulfitobacterium metallireducens DSM 15288 | Desulfitobacterium metallireducens | 54, 7 |
| Desulfobacca acetoxidans | Desulfobacca acetoxidans | 57, 21 |
| Desulfobacca acetoxidans DSM 11109 | Desulfobacca acetoxidans | 57, 21 |
| Desulfobacter postgatei | Desulfobacter postgatei | 37, 4 |
| Desulfobacter postgatei 2ac9 | Desulfobacter postgatei | 37, 4 |
| Desulfobacterium autotrophicum | Desulfobacterium autotrophicum | 102, 44 |
| Desulfobacterium autotrophicum HRM2 | Desulfobacterium autotrophicum | 102, 44 |
| Desulfobacterium oleovorans | Desulfococcus oleovorans | 70, 12 |
| Desulfobulbus propionicus | Desulfobulbus propionicus | 49, 3 |
| Desulfobulbus propionicus DSM 2032 | Desulfobulbus propionicus | 49, 3 |
| Desulfococcus oleovorans | Desulfococcus oleovorans | 70, 12 |
| Desulfococcus oleovorans Hxd3 | Desulfococcus oleovorans | 70, 12 |
| Desulfofarcimen acetoxidans | Desulfotomaculum acetoxidans | 89, 35 |
| Desulfohalobium retbaense | Desulfohalobium retbaense | 56, 32 |
| Desulfohalobium retbaense DSM 5692 | Desulfohalobium retbaense | 56, 32 |
| Desulfohalobium retbense | Desulfohalobium retbaense | 56, 32 |
| Desulfomicrobium baculatum | Desulfomicrobium baculatum | 72, 43 |
| Desulfomicrobium baculatum DSM 4028 | Desulfomicrobium baculatum | 72, 43 |
| Desulfomicrobium baculatus | Desulfomicrobium baculatum | 72, 43 |
| Desulfomonas pigra | Desulfovibrio piger | 30, 7 |
| Desulfomonile tiedjei | Desulfomonile tiedjei | 38, 10 |
| Desulfomonile tiedjei DSM 6799 | Desulfomonile tiedjei | 38, 10 |
| Desulfonatronospira thiodismutans | Desulfonatronospira thiodismutans | 35, 5 |
| Desulfonatronospira thiodismutans ASO3-1 | Desulfonatronospira thiodismutans | 35, 5 |
| Desulforudis audaxviator | Candidatus Desulforudis audaxviator | 57, 22 |
| Desulfosporosinus acidiphilus | Desulfosporosinus acidiphilus | 61, 15 |
| Desulfosporosinus acidiphilus SJ4 | Desulfosporosinus acidiphilus | 61, 15 |
| Desulfosporosinus meridiei | Desulfosporosinus meridiei | 59, 9 |
| Desulfosporosinus meridiei DSM 13257 | Desulfosporosinus meridiei | 59, 9 |
| Desulfosporosinus orientis | Desulfosporosinus orientis | 100, 33 |
| Desulfosporosinus orientis DSM 765 | Desulfosporosinus orientis | 100, 33 |
| Desulfosporosinus sp. OT | Desulfosporosinus sp. OT | 70, 18 |
| Desulfosporosinus youngiae | Desulfosporosinus youngiae | 65, 9 |
| Desulfosporosinus youngiae DSM 17734 | Desulfosporosinus youngiae | 65, 9 |
| Desulfosudis oleivorans | Desulfococcus oleovorans | 70, 12 |
| Desulfotalea psychrophila | Desulfotalea psychrophila | 66, 17 |
| Desulfotalea psychrophila LSv54 | Desulfotalea psychrophila | 66, 17 |
| Desulfotomaculum acetoxidans | Desulfotomaculum acetoxidans | 89, 35 |
| Desulfotomaculum acetoxidans DSM 771 | Desulfotomaculum acetoxidans | 89, 35 |
| Desulfotomaculum acetoxidans Widdel and Pfennig 1977 | Desulfotomaculum acetoxidans | 89, 35 |
| Desulfotomaculum carboxydivorans | Desulfotomaculum carboxydivorans | 63, 21 |
| Desulfotomaculum carboxydivorans CO-1-SRB | Desulfotomaculum carboxydivorans | 63, 21 |
| Desulfotomaculum gibsoniae | Desulfotomaculum gibsoniae | 58, 4 |
| Desulfotomaculum gibsoniae DSM 7213 | Desulfotomaculum gibsoniae | 58, 4 |
| Desulfotomaculum kuznetsovii | Desulfotomaculum kuznetsovii | 63, 19 |
| Desulfotomaculum kuznetsovii DSM 6115 | Desulfotomaculum kuznetsovii | 63, 19 |
| Desulfotomaculum nigrificans | Desulfotomaculum nigrificans | 49, 6 |
| Desulfotomaculum nigrificans DSM 574 | Desulfotomaculum nigrificans | 49, 6 |
| Desulfotomaculum orientis | Desulfosporosinus orientis | 100, 33 |
| Desulfotomaculum reducens | Desulfotomaculum reducens | 81, 27 |
| Desulfotomaculum reducens MI-1 | Desulfotomaculum reducens | 81, 27 |
| Desulfotomaculum ruminis | Desulfotomaculum ruminis | 79, 28 |
| Desulfotomaculum ruminis DSM 2154 | Desulfotomaculum ruminis | 79, 28 |
| Desulfovibrio aespoeensis | Desulfovibrio aespoeensis | 63, 24 |
| Desulfovibrio aespoeensis Aspo-2 | Desulfovibrio aespoeensis | 63, 24 |
| Desulfovibrio africanus | Desulfovibrio africanus | 70, 19 |
| Desulfovibrio africanus PCS | Desulfovibrio africanus | 70, 19 |
| Desulfovibrio africanus str. Walvis Bay | Desulfovibrio africanus | 70, 19 |
| Desulfovibrio africanus Walvis Bay | Desulfovibrio africanus | 70, 19 |
| Desulfovibrio alaskensis | Desulfovibrio alaskensis | 57, 31 |
| Desulfovibrio alaskensis G20 | Desulfovibrio alaskensis | 57, 31 |
| Desulfovibrio baarsii | Desulfarculus baarsii | 70, 27 |
| Desulfovibrio baculatum | Desulfomicrobium baculatum | 72, 43 |
| Desulfovibrio baculatus | Desulfomicrobium baculatum | 72, 43 |
| Desulfovibrio baculatus Rozanova and Nazina 1984 | Desulfomicrobium baculatum | 72, 43 |
| Desulfovibrio desulfuricans | Desulfovibrio desulfuricans | 153, 49 |
| Desulfovibrio desulfuricans G20 | Desulfovibrio desulfuricans | 153, 49 |
| Desulfovibrio desulfuricans ND132 | Desulfovibrio desulfuricans | 153, 49 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Desulfovibrio desulfuricans | 153, 49 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. G20 | Desulfovibrio desulfuricans | 153, 49 |
| Desulfovibrio fructosivorans | Desulfovibrio fructosivorans | 47, 9 |
| Desulfovibrio fructosivorans JJ | Desulfovibrio fructosivorans | 47, 9 |
| Desulfovibrio fructosovorans | Desulfovibrio fructosivorans | 47, 9 |
| Desulfovibrio fructosovorans JJ | Desulfovibrio fructosivorans | 47, 9 |
| Desulfovibrio gigas | Desulfovibrio gigas | 1, 1 |
| Desulfovibrio gigas DSM 1382 = ATCC 19364 | Desulfovibrio gigas | 1, 1 |
| Desulfovibrio magneticus | Desulfovibrio magneticus | 84, 51 |
| Desulfovibrio magneticus RS-1 | Desulfovibrio magneticus | 84, 51 |
| Desulfovibrio magneticus str. Maddingley MBC34 | Desulfovibrio magneticus | 84, 51 |
| Desulfovibrio orientis | Desulfosporosinus orientis | 100, 33 |
| Desulfovibrio piger | Desulfovibrio piger | 30, 7 |
| Desulfovibrio piger ATCC 29098 | Desulfovibrio piger | 30, 7 |
| Desulfovibrio salexigens | Desulfovibrio salexigens | 82, 38 |
| Desulfovibrio salexigens DSM 2638 | Desulfovibrio salexigens | 82, 38 |
| Desulfovibrio salexigens Postgate and Campbell 1966 | Desulfovibrio salexigens | 82, 38 |
| Desulfovibrio sp. 3_1_syn3 | Desulfovibrio sp. 3_1_syn3 | 32, 5 |
| Desulfovibrio sp. 6_1_46AFAA | Desulfovibrio sp. 6_1_46AFAA | 31, 4 |
| Desulfovibrio sp. A2 | Desulfovibrio sp. A2 | 39, 5 |
| Desulfovibrio sp. FW1012B | Desulfovibrio sp. FW1012B | 42, 8 |
| Desulfovibrio sp. ND132 | Desulfovibrio sp. ND132 | 1, 0 |
| Desulfovibrio sp. U5L | Desulfovibrio sp. U5L | 42, 5 |
| Desulfovibrio vulgaris | Desulfovibrio vulgaris | 149, 58 |
| Desulfovibrio vulgaris ’Miyazaki F’ | Desulfovibrio vulgaris | 149, 58 |
| Desulfovibrio vulgaris DP4 | Desulfovibrio vulgaris | 149, 58 |
| Desulfovibrio vulgaris RCH1 | Desulfovibrio vulgaris | 149, 58 |
| Desulfovibrio vulgaris str. ’Miyazaki F’ | Desulfovibrio vulgaris | 149, 58 |
| Desulfovibrio vulgaris str. Hildenborough | Desulfovibrio vulgaris | 149, 58 |
| Desulfovibrio vulgaris str. Miyazaki F | Desulfovibrio vulgaris | 149, 58 |
| Desulfovibrio vulgaris subsp. vulgaris DP4 | Desulfovibrio vulgaris | 149, 58 |
| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough | Desulfovibrio vulgaris | 149, 58 |
| Desulfurispirillum indicum | Desulfurispirillum indicum | 55, 23 |
| Desulfurispirillum indicum S5 | Desulfurispirillum indicum | 55, 23 |
| Desulfurivibrio alkaliphilus | Desulfurivibrio alkaliphilus | 55, 24 |
| Desulfurivibrio alkaliphilus AHT2 | Desulfurivibrio alkaliphilus | 55, 24 |
| Desulfurobacterium thermolithotrophum | Desulfurobacterium thermolithotrophum | 35, 14 |
| Desulfurobacterium thermolithotrophum DSM 11699 | Desulfurobacterium thermolithotrophum | 35, 14 |
| Desulfurococcus fermentans | Desulfurococcus fermentans | 20, 1 |
| Desulfurococcus fermentans DSM 16532 | Desulfurococcus fermentans | 20, 1 |
| Desulfurococcus kamchatkensis | Desulfurococcus kamchatkensis | 39, 17 |
| Desulfurococcus kamchatkensis 1221n | Desulfurococcus kamchatkensis | 39, 17 |
| Desulfurococcus mucosus | Desulfurococcus mucosus | 32, 11 |
| Desulfurococcus mucosus DSM 2162 | Desulfurococcus mucosus | 32, 11 |
| Desulfurolobus ambivalens | Acidianus ambivalens | 0, 1 |
| Desulfuromonas acetoxidans | Desulfuromonas acetoxidans | 49, 12 |
| Desulfuromonas acetoxidans DSM 684 | Desulfuromonas acetoxidans | 49, 12 |
| Desulfuromonas acetoxidans Pfennig and Biebl 1977 | Desulfuromonas acetoxidans | 49, 12 |
| Dethiobacter alkaliphilus | Dethiobacter alkaliphilus | 59, 5 |
| Dethiobacter alkaliphilus AHT 1 | Dethiobacter alkaliphilus | 59, 5 |
| Dethiosulfovibrio peptidovorans | Dethiosulfovibrio peptidovorans | 73, 53 |
| Dethiosulfovibrio peptidovorans DSM 11002 | Dethiosulfovibrio peptidovorans | 73, 53 |
| Devario aequipinnatus | Danio aequipinnatus | 1, 0 |
| Devario aequipinnatus (McClelland, 1839) | Danio aequipinnatus | 1, 0 |
| Devario devario | Danio devario | 2, 0 |
| Devario devario (Hamilton, 1822) | Danio devario | 2, 0 |
| Devario malabaricus | Danio malabaricus | 1, 0 |
| Devario pathirana | Danio pathirana | 2, 0 |
| Devario pathirana (Kottelat & Pethiyagoda, 1990) | Danio pathirana | 2, 0 |
| devilpepper | Rauvolfia serpentina | 1, 0 |
| Diabrotica virgifera virgifera | Diabrotica virgifera virgifera | 7, 0 |
| Diachasmimorpha longicaudata entomopoxvirus | Diachasmimorpha longicaudata entomopoxvirus | 0, 1 |
| Diadromus pulchellus ascovirus 4a | Diadromus pulchellus ascovirus 4a | 1, 0 |
| Diaemus youngi | Diaemus youngi | 1, 0 |
| Dialister invisus | Dialister invisus | 24, 12 |
| Dialister invisus CAG:218 | Dialister invisus | 24, 12 |
| Dialister invisus DSM 15470 | Dialister invisus | 24, 12 |
| Dialister micraerophilus | Dialister micraerophilus | 24, 8 |
| Dialister micraerophilus DSM 19965 | Dialister micraerophilus | 24, 8 |
| Dialister microaerophilus | Dialister micraerophilus | 24, 8 |
| Dialister microaerophilus UPII 345-E | Dialister micraerophilus | 24, 8 |
| Dialister succinatiphilus | Dialister succinatiphilus | 27, 6 |
| Dialister succinatiphilus YIT 11850 | Dialister succinatiphilus | 27, 6 |
| Dialysis elongata | Dialysis elongata | 0, 1 |
| diamond-spot pearl | Loxostege sticticalis | 1, 0 |
| diamondback moth | Plutella xylostella | 14, 9 |
| Dianthus caryophyllus | Dianthus caryophyllus | 1, 0 |
| Diaphorina citri | Diaphorina citri | 1, 0 |
| Diaprepes abbreviata | Diaprepes abbreviata | 3, 0 |
| Diaprepes abbreviatus | Diaprepes abbreviata | 3, 0 |
| Diaprepes abbreviatus (Linnaeus, 1758) | Diaprepes abbreviata | 3, 0 |
| Diaprepes root weevil | Diaprepes abbreviata | 3, 0 |
| Diascia yellow mottle virus | Diascia yellow mottle virus | 1, 0 |
| Diatraea saccharalis | Diatraea saccharalis | 3, 0 |
| Dibamus novaeguinae | Dibamus novaeguineae | 1, 0 |
| Dibamus novaeguineae | Dibamus novaeguineae | 1, 0 |
| dibenzofuran-degrading bacterium DPO360 | Terrabacter sp. DPO360 | 0, 1 |
| Dicentrarchus labrax | Dicentrarchus labrax | 61, 10 |
| Dicentrarchus labrax (Linnaeus, 1758) | Dicentrarchus labrax | 61, 10 |
| Diceros bicornis | Diceros bicornis | 1, 0 |
| Dichanthelium lanuginosum | Dichanthelium lanuginosum | 1, 0 |
| Dichelobacter nodosus | Dichelobacter nodosus | 45, 8 |
| Dichelobacter nodosus VCS1703A | Dichelobacter nodosus | 45, 8 |
| Dichelostemma capitatum | Dichelostemma capitatum | 1, 0 |
| Dichelostemma capitatum (Benth.) A.W.Wood | Dichelostemma capitatum | 1, 0 |
| Dichomitus squalens | Dichomitus squalens | 137, 12 |
| Dichomitus squalens LYAD-421 SS1 | Dichomitus squalens | 137, 12 |
| Dickeya chrysanthemi | Dickeya chrysanthemi | 12, 1 |
| Dickeya dadantii | Dickeya dadantii | 271, 150 |
| Dickeya dadantii 3937 | Dickeya dadantii | 271, 150 |
| Dickeya dadantii Ech586 | Dickeya dadantii | 271, 150 |
| Dickeya dadantii Ech703 | Dickeya dadantii | 271, 150 |
| Dickeya zeae | Dickeya zeae | 57, 8 |
| Dickeya zeae EC1 | Dickeya zeae | 57, 8 |
| Dickeya zeae Ech1591 | Dickeya zeae | 57, 8 |
| Dicrospirillum rubrum | Rhodospirillum rubrum | 78, 17 |
| Dictyocaulus viviparus | Dictyocaulus viviparus | 11, 0 |
| Dictyoglomus thermophilum | Dictyoglomus thermophilum | 60, 23 |
| Dictyoglomus thermophilum H-6-12 | Dictyoglomus thermophilum | 60, 23 |
| Dictyoglomus turgidum | Dictyoglomus turgidum | 53, 21 |
| Dictyoglomus turgidum DSM 6724 | Dictyoglomus turgidum | 53, 21 |
| Dictyoglomus turgidus | Dictyoglomus turgidum | 53, 21 |
| Dictyophorus guttatus | Romalea microptera | 0, 1 |
| Dictyostelium discoideum | Dictyostelium discoideum | 174, 49 |
| Dictyostelium discoideum AX4 | Dictyostelium discoideum | 174, 49 |
| Dictyostelium fasciculatum | Dictyostelium fasciculatum | 124, 20 |
| Dictyostelium purpureum | Dictyostelium purpureum | 132, 40 |
| Dicyema japonicum | Dicyema japonicum | 1, 0 |
| Didelphis marsupialis virginiana | Didelphis virginiana | 0, 1 |
| Didelphis virginiana | Didelphis virginiana | 0, 1 |
| Didierea madagascariensis | Didierea madagascariensis | 1, 0 |
| Didymococcus colitermitum | Diplosphaera colitermitum | 27, 6 |
| Dietzia cinnamea | Dietzia cinnamea | 28, 5 |
| Dietzia cinnamea P4 | Dietzia cinnamea | 28, 5 |
| Diheterospora chlamydosporia | Pochonia chlamydosporia | 1, 0 |
| Diheterospora chlamydosporia var. chlamydosporia | Metacordyceps chlamydosporia | 1, 0 |
| dill | Anethum graveolens | 1, 0 |
| Dillenia indica | Dillenia indica | 1, 0 |
| dime-store turtle | Trachemys scripta | 2, 0 |
| Dimocarpus longan | Dimocarpus longan | 5, 0 |
| Dinocampus coccinellae | Dinocampus coccinellae | 0, 1 |
| Dinoroseobacter shibae | Dinoroseobacter shibae | 100, 22 |
| Dinoroseobacter shibae DFL 12 | Dinoroseobacter shibae | 100, 22 |
| Dinothrombium pandorae | Dinothrombium pandorae | 1, 0 |
| Dione juno MNPV tmk1/ARG/2003 | Dione juno MNPV tmk1/ARG/2003 | 1, 0 |
| Dione juno nucleopolyhedrovirus tmk1/ARG/2003 | Dione juno MNPV tmk1/ARG/2003 | 1, 0 |
| Dioscorea elephantipes | Dioscorea elephantipes | 1, 0 |
| Dioscorea elephantipes (LHer.) Engl. | Dioscorea elephantipes | 1, 0 |
| Diospyros kaki | Diospyros kaki | 2, 0 |
| Dipetalonema viteae | Acanthocheilonema viteae | 1, 0 |
| Diphylla ecaudata | Diphylla ecaudata | 1, 0 |
| Diplobacille de la conjonctivite subaigue | Moraxella lacunata | 1, 0 |
| Diplobacillus moraxenfeld | Moraxella lacunata | 1, 0 |
| Diplococcos pharyngis siccus | Neisseria sicca | 41, 5 |
| Diplococcus constellatus | Streptococcus constellatus | 38, 9 |
| Diplococcus glycinophilus | Parvimonas micra | 46, 7 |
| Diplococcus gonorrhoeae | Neisseria gonorrhoeae | 77, 32 |
| Diplococcus morbillorum | Gemella morbillorum | 27, 2 |
| Diplococcus mucosus | Neisseria mucosa | 46, 6 |
| Diplococcus pneumoniae | Streptococcus pneumoniae | 326, 93 |
| Diplococcus siccus | Neisseria sicca | 41, 5 |
| Diplodactylus ciliaris | Strophurus ciliaris | 1, 0 |
| Diplodus sargus | Diplodus sargus | 2, 0 |
| Diplodus sargus (Linnaeus, 1758) | Diplodus sargus | 2, 0 |
| Diploglossus warreni | Celestus warreni | 1, 0 |
| Diplokokkus intracellularis meningitidis | Neisseria meningitidis | 119, 42 |
| Diplosphaera colitermitum | Diplosphaera colitermitum | 27, 6 |
| Diplosphaera colitermitum TAV2 | Diplosphaera colitermitum | 27, 6 |
| Diplosphaera colitermitum TAV2 | Diplosphaera colitermitum | 27, 6 |
| Dipodomys ordii | Dipodomys ordii | 536, 382 |
| Dirofilaria immitis | Dirofilaria immitis | 3, 0 |
| Discodermia japonica | Discodermia japonica | 1, 0 |
| Discomyces brasiliensis | Nocardia brasiliensis | 91, 13 |
| Discomyces farcinicus | Nocardia farcinica | 153, 56 |
| dissimilatory selenate-respiring bacterium S5 | bacterium S5 | 1, 0 |
| Dissostichus mawsoni | Dissostichus mawsoni | 12, 2 |
| Dissostichus mawsoni haplotype 1 | Dissostichus mawsoni | 12, 2 |
| Dissostichus mawsoni haplotype 2 | Dissostichus mawsoni | 12, 2 |
| Dissostichus mawsoni Norman, 1937 | Dissostichus mawsoni | 12, 2 |
| Ditylenchus destructor | Ditylenchus destructor | 1, 0 |
| Diuraphis noxia | Diuraphis noxia | 3, 0 |
| Djungarian hamster | Phodopus campbelli | 1, 0 |
| DMV | Dasheen mosaic virus | 3, 0 |
| DNA launch vector pDE-GFP2 | DNA launch vector pDE-GFP2 | 3, 0 |
| dog | Canis lupus familiaris | 559, 190 |
| dog adenovirus 1 | canine adenovirus type 1 | 1, 0 |
| dog adenovirus 2 | canine adenovirus type 2 | 1, 0 |
| dog heartworm nematode | Dirofilaria immitis | 3, 0 |
| dog hookworm | Ancylostoma caninum | 9, 1 |
| dog roundworm | Toxocara canis | 3, 0 |
| dogfish, spiny | Squalus acanthias | 2, 1 |
| dogfish, spotted | Scyliorhinus canicula | 4, 0 |
| dogs | Canis lupus familiaris | 559, 190 |
| Doguera baboon | Papio anubis | 16, 2 |
| dojo loach | Misgurnus anguillicaudatus | 2, 0 |
| Dokdoa eastseensis | Dokdonia donghaensis | 72, 28 |
| Dokdonia donghaensis | Dokdonia donghaensis | 72, 28 |
| Dokdonia donghaensis DSW-1 | Dokdonia donghaensis | 72, 28 |
| Dokdonia donghaensis MED134 | Dokdonia donghaensis | 72, 28 |
| Dolichospermum flos-aquae | Anabaena flos-aquae | 1, 0 |
| Dolichospermum flos-aquae PMC207.03 | Anabaena flos-aquae | 1, 0 |
| Dolichospermum flos-aquae PMC208.03 | Anabaena flos-aquae | 1, 0 |
| Dolosigranulum pigrum | Dolosigranulum pigrum | 28, 6 |
| Dolosigranulum pigrum ATCC 51524 | Dolosigranulum pigrum | 28, 6 |
| dolphin, Amazon | Inia geoffrensis | 1, 0 |
| dolphin, Amazon river | Inia geoffrensis | 1, 0 |
| dolphin, bottle-nosed | Tursiops truncatus | 522, 222 |
| dolphin, pink river | Inia geoffrensis | 1, 0 |
| dolphin, Risso’s | Grampus griseus | 1, 0 |
| dolphin, rough-toothed | Steno bredanensis | 0, 1 |
| dolphin, striped | Stenella coeruleoalba | 2, 1 |
| domestic Bactrian camel | Camelus bactrianus | 1, 0 |
| domestic cat | Felis catus | 107, 39 |
| domestic cattle | Bos taurus | 621, 174 |
| domestic cow | Bos taurus | 621, 174 |
| domestic goat | Capra hircus | 31, 6 |
| domestic guinea pig | Cavia porcellus | 922, 368 |
| domestic horse | Equus caballus | 559, 177 |
| domestic pigeon | Columba livia | 1, 0 |
| domestic rabbit | Oryctolagus cuniculus | 613, 105 |
| domestic sheep | Ovis aries | 49, 20 |
| domestic silkworm | Bombyx mori | 76, 24 |
| domestic water buffalo | Bubalus bubalis | 26, 2 |
| domestic yak | Bos grunniens | 6, 3 |
| Donggang virus | Donggang virus | 1, 0 |
| Doratomyces microsporus | Doratomyces microsporus | 1, 0 |
| Dorcoceras hygrometricum | Boea hygrometrica | 1, 0 |
| Dorea formicigenerans | Dorea formicigenerans | 61, 15 |
| Dorea formicigenerans 4_6_53AFAA | Dorea formicigenerans | 61, 15 |
| Dorea formicigenerans ATCC 27755 | Dorea formicigenerans | 61, 15 |
| Dorea formicigenerans CAG:28 | Dorea formicigenerans | 61, 15 |
| Dorea longicatena | Dorea longicatena | 43, 7 |
| Dorea longicatena CAG:42 | Dorea longicatena | 43, 7 |
| Dorea longicatena DSM 13814 | Dorea longicatena | 43, 7 |
| Doryanthes palmeri | Doryanthes palmeri | 1, 0 |
| Doryichthys multiannulatus | Doryrhamphus multiannulatus | 1, 0 |
| Doryrhamphus multiannulatus | Doryrhamphus multiannulatus | 1, 0 |
| Douglas fir | Pseudotsuga menziesii | 1, 0 |
| Douglas-fir | Pseudotsuga menziesii | 1, 0 |
| douroucouli | Aotus trivirgatus | 0, 2 |
| dove langur | Pygathrix nemaeus | 2, 0 |
| Draba nemorosa | Draba nemorosa | 1, 0 |
| Drechslera carbonum | Cochliobolus carbonum | 1, 0 |
| Drimia altissima | Drimia altissima | 1, 0 |
| Drimys granadensis | Drimys granadensis | 1, 0 |
| Drimys granadensis L.f. | Drimys granadensis | 1, 0 |
| Drimys granatensis | Drimys granadensis | 1, 0 |
| Drimys granatensis Mutis ex L.f. | Drimys granadensis | 1, 0 |
| Dromaius novae-hollandiae | Dromaius novaehollandiae | 2, 2 |
| Dromaius novaehollandiae | Dromaius novaehollandiae | 2, 2 |
| dromedaries | Camelus dromedarius | 5, 1 |
| dromedary | Camelus dromedarius | 5, 1 |
| Dromedary camel coronavirus HKU23 | Betacoronavirus 1 | 5, 0 |
| Dromiciops australis | Dromiciops gliroides | 0, 1 |
| Dromiciops gliroides | Dromiciops gliroides | 0, 1 |
| Drosera capensis | Drosera capensis | 1, 0 |
| Drosera capensis L. | Drosera capensis | 1, 0 |
| Drosophila affinis | Drosophila affinis | 3, 0 |
| Drosophila americana | Drosophila americana | 2, 2 |
| Drosophila americana americana | Drosophila americana | 2, 2 |
| Drosophila americana texana | Drosophila americana | 2, 2 |
| Drosophila ananassae | Drosophila ananassae | 391, 138 |
| Drosophila ananassae strain TSC#14024-0371.13 | Drosophila ananassae | 391, 138 |
| Drosophila annanassae | Drosophila ananassae | 391, 138 |
| Drosophila arizona | Drosophila arizonae | 8, 2 |
| Drosophila arizonae | Drosophila arizonae | 8, 2 |
| Drosophila atripex | Drosophila atripex | 1, 0 |
| Drosophila biseriata | Drosophila biseriata | 1, 0 |
| Drosophila buzzati | Drosophila buzzatii | 2, 8 |
| Drosophila buzzatii | Drosophila buzzatii | 2, 8 |
| Drosophila dasycnemia | Drosophila dasycnemia | 0, 1 |
| Drosophila differens | Drosophila differens | 1, 0 |
| Drosophila disjuncta | Drosophila disjuncta | 0, 1 |
| Drosophila erecta | Drosophila erecta | 390, 128 |
| Drosophila erecta strain TSC#14021-0224.01 | Drosophila erecta | 390, 128 |
| Drosophila eugracilis | Drosophila eugracilis | 2, 0 |
| Drosophila ezoana | Drosophila ezoana | 1, 1 |
| Drosophila grimshawi | Drosophila grimshawi | 356, 113 |
| Drosophila grimshawi strain TSC#15287-2541.00 | Drosophila grimshawi | 356, 113 |
| Drosophila hemipeza | Drosophila hemipeza | 1, 0 |
| Drosophila heteroneura | Drosophila heteroneura | 5, 0 |
| Drosophila hydei | Drosophila hydei | 1, 0 |
| Drosophila hydei Sturtevant, 1921 | Drosophila hydei | 1, 0 |
| Drosophila hystricosa | Drosophila hystricosa | 1, 0 |
| Drosophila hystricosa (Hardy & Kaneshiro, 1969) | Drosophila hystricosa | 1, 0 |
| Drosophila jambulina | Drosophila jambulina | 1, 0 |
| Drosophila kanekoi | Drosophila kanekoi | 1, 0 |
| Drosophila kikkawai | Drosophila kikkawai | 1, 0 |
| Drosophila koepferae | Drosophila koepferae | 0, 10 |
| Drosophila lineosetae | Drosophila lineosetae | 0, 1 |
| Drosophila littoralis | Drosophila littoralis | 2, 1 |
| Drosophila lummei | Drosophila lummei | 1, 0 |
| Drosophila lutescens | Drosophila lutescens | 2, 0 |
| Drosophila mauritiana | Drosophila mauritiana | 5, 3 |
| Drosophila mayaguana | Drosophila mayaguana | 3, 0 |
| Drosophila melanica | Drosophila melanica | 1, 0 |
| Drosophila melanogaster | Drosophila melanogaster | 493, 259 |
| Drosophila melanogaster American nodavirus (ANV) SW-2009a | Drosophila melanogaster American nodavirus (ANV) SW-2009a | 1, 0 |
| Drosophila melanogaster nodavirus SW-2009a | Drosophila melanogaster American nodavirus (ANV) SW-2009a | 1, 0 |
| Drosophila mettleri | Drosophila mettleri | 3, 0 |
| Drosophila mimica | Drosophila mimica | 0, 1 |
| Drosophila miranda | Drosophila miranda | 8, 3 |
| Drosophila mitchelli | Drosophila mitchelli | 1, 0 |
| Drosophila mohavensis | Drosophila mojavensis | 422, 103 |
| Drosophila mojavensis | Drosophila mojavensis | 422, 103 |
| Drosophila mojavensis baja | Drosophila mojavensis | 422, 103 |
| Drosophila mojavensis mojavensis | Drosophila mojavensis | 422, 103 |
| Drosophila mojavensis sonorensis | Drosophila mojavensis | 422, 103 |
| Drosophila mojavensis TSC#15081-1352.22 | Drosophila mojavensis | 422, 103 |
| Drosophila mojavensis wrigleyi | Drosophila mojavensis | 422, 103 |
| Drosophila montana | Drosophila montana | 1, 1 |
| Drosophila navajoa | Drosophila navajoa | 3, 0 |
| Drosophila novamexicana | Drosophila novamexicana | 2, 1 |
| Drosophila persimilis | Drosophila persimilis | 370, 130 |
| Drosophila persimilis strain MSH-3 | Drosophila persimilis | 370, 130 |
| Drosophila petalopeza | Drosophila petalopeza | 0, 1 |
| Drosophila pseudoobscura | Drosophila pseudoobscura | 409, 127 |
| Drosophila pseudoobscura pseudoobscura | Drosophila pseudoobscura | 409, 127 |
| Drosophila pseudoobscura pseudoobscura strain MV2-25 | Drosophila pseudoobscura | 409, 127 |
| Drosophila santomea | Drosophila santomea | 2, 1 |
| Drosophila sechellia | Drosophila sechellia | 375, 141 |
| Drosophila sechellia strain Rob3c | Drosophila sechellia | 375, 141 |
| Drosophila sechellia Tsacas and Bachli, 1981 | Drosophila sechellia | 375, 141 |
| Drosophila silvestris | Drosophila silvestris | 6, 3 |
| Drosophila simulans | Drosophila simulans | 387, 134 |
| Drosophila sp. | Drosophila sp. | 2, 0 |
| Drosophila subobscura | Drosophila subobscura | 1, 0 |
| Drosophila suzukii | Drosophila suzukii | 1, 0 |
| Drosophila teissieri | Drosophila teissieri | 5, 1 |
| Drosophila teissieri Tsacas, 1971 | Drosophila teissieri | 5, 1 |
| Drosophila virilis | Drosophila virilis | 370, 120 |
| Drosophila virilis strain TSC#15010-1051.87 | Drosophila virilis | 370, 120 |
| Drosophila virilis Sturtevant, 1916 | Drosophila virilis | 370, 120 |
| Drosophila willistoni | Drosophila willistoni | 391, 107 |
| Drosophila willistoni strain TSC#14030-0811.24 | Drosophila willistoni | 391, 107 |
| Drosophila x virus | Drosophila x virus | 1, 1 |
| Drosophila yakuba | Drosophila yakuba | 416, 142 |
| Drosophila yakuba Tai18E2 | Drosophila yakuba | 416, 142 |
| Druentica alsa | Druentica alsa | 1, 0 |
| Druentica alsa Schaus, 1910 | Druentica alsa | 1, 0 |
| Druenticia alas | Druentica alsa | 1, 0 |
| Druenticia alsa | Druentica alsa | 1, 0 |
| dry rot fungus | Serpula lacrymans | 116, 17 |
| drylands vesper mouse | Calomys musculinus | 0, 2 |
| Drysdalia coronoides | Drysdalia coronoides | 1, 0 |
| duck | Anas platyrhynchos | 5, 5 |
| Duck adenovirus 1 | duck adenovirus A | 2, 0 |
| duck adenovirus A duck adenovirus A | duck adenovirus A | 2, 0 |
| duck adenovirus A | duck adenovirus A | 2, 0 |
| Duck astrovirus 1 | Duck astrovirus GII.A | 1, 0 |
| Duck astrovirus C-NGB | Duck astrovirus C-NGB | 1, 0 |
| Duck astrovirus GII.A | Duck astrovirus GII.A | 1, 0 |
| Duck coronavirus | Avian coronavirus | 6, 0 |
| Duck egg-drop syndrome virus | Duck egg-drop syndrome virus | 1, 0 |
| Duck enteritis virus | Duck enteritis virus | 2, 0 |
| Duck flavivirus strain TA | Duck flavivirus TA | 1, 0 |
| Duck flavivirus TA | Duck flavivirus TA | 1, 0 |
| Duck hepatitis A virus | Duck hepatitis A virus | 2, 0 |
| Duck hepatitis A virus 1 | Duck hepatitis A virus | 2, 0 |
| Duck hepatitis A virus 3 | Duck hepatitis A virus | 2, 0 |
| Duck hepatitis virus 1 | Duck hepatitis virus 1 | 1, 0 |
| Duck hepatitis virus 1 strain 04G | Duck hepatitis virus 1 | 1, 0 |
| Duck hepatitis virus 1 strain 90D | Duck hepatitis virus 1 | 1, 0 |
| Duck hepatitis virus 1v | Duck hepatitis A virus | 2, 0 |
| Duck hepatitis virus AP | Duck hepatitis virus AP | 1, 0 |
| Duck hepatitis virus AP-03337 | Duck hepatitis virus AP | 1, 0 |
| Duck hepatitis virus AP-04009 | Duck hepatitis virus AP | 1, 0 |
| Duck hepatitis virus AP-04114 | Duck hepatitis virus AP | 1, 0 |
| Duck hepatitis virus AP-04203 | Duck hepatitis virus AP | 1, 0 |
| Duck hepatitis virus DHV-HS | Duck hepatitis virus 1 | 1, 0 |
| Duck hepatitis virus DHV-HSS | Duck hepatitis virus 1 | 1, 0 |
| Duck hepatitis virus FC64/CHN/2009 | Duck hepatitis A virus | 2, 0 |
| Duck hepatitis virus G | Duck hepatitis virus 1 | 1, 0 |
| Duck hepatitis virus GD | Duck hepatitis virus AP | 1, 0 |
| Duck hepatitis virus SD01 | Duck hepatitis A virus | 2, 0 |
| Duck hepatitis virus SD02 | Duck hepatitis A virus | 2, 0 |
| Duck hepatitis virus type 1 | Duck hepatitis A virus | 2, 0 |
| Duck plague virus | Anatid herpesvirus 1 | 2, 0 |
| Duck reovirus | Avian orthoreovirus | 1, 0 |
| Duck reovirus NP03/CHN/2009 | Avian orthoreovirus | 1, 0 |
| duck, crested | Anas specularioides | 2, 0 |
| duck-billed platypus | Ornithorhynchus anatinus | 383, 91 |
| duckbill platypus | Ornithorhynchus anatinus | 383, 91 |
| Ducula rufigaster | Ducula rufigaster | 0, 1 |
| Dugbe nairovirus | Dugbe virus | 2, 0 |
| Dugbe virus | Dugbe virus | 2, 0 |
| Dugesia (Schmidtea) mediterranea | Schmidtea mediterranea | 4, 2 |
| Dugesia japonica | Dugesia japonica | 1, 0 |
| Dugesia mediterranea | Schmidtea mediterranea | 4, 2 |
| dugong | Dugong dugon | 1, 0 |
| Dugong dugon | Dugong dugon | 1, 0 |
| Dulcamara mottle tymovirus | Dulcamara mottle virus | 1, 0 |
| Dulcamara mottle virus | Dulcamara mottle virus | 1, 0 |
| Dumerils clam worm | Platynereis dumerilii | 2, 0 |
| Dumontinia tuberosa | Dumontinia tuberosa | 2, 0 |
| Dumontinia ulmariae | Dumontinia ulmariae | 1, 0 |
| Dunaliella salina | Dunaliella salina | 1, 5 |
| Dunaliella tertiolecta | Dunaliella tertiolecta | 0, 3 |
| Dunaliella viridis | Dunaliella viridis | 0, 1 |
| Dunckerocampus multiannulatus | Doryrhamphus multiannulatus | 1, 0 |
| Durinskia baltica | Durinskia baltica | 1, 0 |
| Dusky titi | Callicebus moloch | 5, 1 |
| Dutch elm disease fungus | Ophiostoma ulmi | 1, 0 |
| Dutch iris | Iris hollandica | 3, 0 |
| dwarf banana | Musa acuminata | 7, 1 |
| Dwarf hamster endogenous retrovirus MRS-Ps | Dwarf hamster endogenous retrovirus MRS-Ps | 1, 0 |
| dwarf honey bee | Apis florea | 171, 30 |
| dwarf honeybee | Apis florea | 171, 30 |
| dwarf medaka | Oryzias minutillus | 2, 0 |
| dwarf sperm whale | Kogia sima | 1, 0 |
| Dyadobacter fermentans | Dyadobacter fermentans | 195, 80 |
| Dyadobacter fermentans DSM 18053 | Dyadobacter fermentans | 195, 80 |
| Dyella ginsengisoli | Dyella ginsengisoli | 1, 0 |
| Dysgonomonas gadei | Dysgonomonas gadei | 55, 6 |
| Dysgonomonas gadei ATCC BAA-286 | Dysgonomonas gadei | 55, 6 |
| Dysgonomonas mossii | Dysgonomonas mossii | 51, 4 |
| Dysgonomonas mossii DSM 22836 | Dysgonomonas mossii | 51, 4 |
