Index of Organisms
Organisms names highlighted are those for which the genomes have been completely sequenced. Total number of organisms in which peptidases have been classified is 8623. Statistics for peptidases in the completed genomes can be seen here.
| ORGANISM | ||
|---|---|---|
| NAME | MAIN NAME | Counts of known and putative peptidases, and homologues |
| R-plasmid R391 | IncJ plasmid R391 | 2, 0 |
| rabbit | Oryctolagus cuniculus | 613, 105 |
| Rabbit calicivirus | rabbit hemorrhagic disease virus | 1, 0 |
| Rabbit calicivirus Australia 1 MIC-07 | Rabbit calicivirus Australia 1 MIC-07 | 1, 0 |
| Rabbit Calicivirus-Australia 1 (RCV-A1) Isolate MIC-07 | Rabbit calicivirus Australia 1 MIC-07 | 1, 0 |
| Rabbit coronavirus HKU14 | Rabbit coronavirus HKU14 | 3, 0 |
| rabbit fibroma virus | rabbit fibroma virus | 2, 0 |
| Rabbit fibroma virus (strain Kasza) | Shope fibroma virus | 1, 0 |
| Rabbit haemorrhagic disease virus | rabbit hemorrhagic disease virus | 1, 0 |
| rabbit hemorrhagic disease virus | rabbit hemorrhagic disease virus | 1, 0 |
| rabbit hemorrhagic disease virus RHDV | rabbit hemorrhagic disease virus | 1, 0 |
| Rabbit hemorrhagic disease virus-AST89 | rabbit hemorrhagic disease virus | 1, 0 |
| Rabbit hemorrhagic disease virus-BS89 | rabbit hemorrhagic disease virus | 1, 0 |
| Rabbit hemorrhagic disease virus-V351 | rabbit hemorrhagic disease virus | 1, 0 |
| Rabbit picobirnavirus | Rabbit picobirnavirus | 1, 0 |
| Rabbit vesivirus | Rabbit vesivirus | 1, 0 |
| rabbit, domestic | Oryctolagus cuniculus | 613, 105 |
| rabbit, European | Oryctolagus cuniculus | 613, 105 |
| rabbit, Japanese white | Oryctolagus cuniculus | 613, 105 |
| rabbitpox virus | rabbitpox virus | 2, 0 |
| Rabbitpox virus Utrecht | Vaccinia virus | 5, 1 |
| rabbits | Oryctolagus cuniculus | 613, 105 |
| rabies virus | rabies virus | 1, 0 |
| raccoon | Procyon lotor | 1, 1 |
| raccoon dog | Nyctereutes procyonoides | 1, 0 |
| Rachiplusia ou MNPV | Autographa californica MNPV | 1, 0 |
| Rachiplusia ou multiple nucleopolyhedrovirus | Rachiplusia ou multiple nucleopolyhedrovirus | 1, 0 |
| Rachiplusia ou nuclear polyhedrosis virus | Rachiplusia ou multiple nucleopolyhedrovirus | 1, 0 |
| radiation murine leukemia virus | radiation murine leukemia virus | 1, 0 |
| radish | Raphanus sativus | 6, 1 |
| Radish mosaic virus | Radish mosaic virus | 1, 0 |
| Radix peregra | Radix peregra | 3, 0 |
| Radopholus similis | Radopholus similis | 3, 0 |
| ragged-robin | Lychnis flos-cuculi | 1, 0 |
| Rahnella aquatica | Rahnella aquatilis | 98, 45 |
| Rahnella aquatilis | Rahnella aquatilis | 98, 45 |
| Rahnella aquatilis CIP 78.65 = ATCC 33071 | Rahnella aquatilis | 98, 45 |
| Rahnella aquatilis HX2 | Rahnella aquatilis | 98, 45 |
| Rahnella sp. Y9602 | Rahnella sp. Y9602 | 128, 67 |
| rainbow fern | Selaginella uncinata | 1, 0 |
| rainbow smelt | Osmerus mordax | 23, 4 |
| rainbow trout | Oncorhynchus mykiss | 50, 15 |
| Raja erinacea | Raja erinacea | 3, 1 |
| Raja erinacia | Raja erinacea | 3, 1 |
| Ralstonia basilensis | Cupriavidus basilensis | 63, 13 |
| Ralstonia eutropha | Cupriavidus necator | 172, 65 |
| Ralstonia eutropha CH34 | Cupriavidus metallidurans | 150, 62 |
| Ralstonia eutropha H16 | Cupriavidus necator | 172, 65 |
| Ralstonia eutropha JMP134 | Cupriavidus necator | 172, 65 |
| Ralstonia eutropha JMP134 | Cupriavidus pinatubonensis | 110, 66 |
| Ralstonia metallidurans | Cupriavidus metallidurans | 150, 62 |
| Ralstonia metallidurans CH34 | Cupriavidus metallidurans | 150, 62 |
| Ralstonia oxalatica | Wautersia oxalatica | 2, 0 |
| Ralstonia oxalaticus | Wautersia oxalatica | 2, 0 |
| Ralstonia phage phiRSA1 | Ralstonia phage phiRSA1 | 1, 0 |
| Ralstonia phage RSA1 | Ralstonia phage phiRSA1 | 1, 0 |
| Ralstonia pickettii | Ralstonia pickettii | 153, 66 |
| Ralstonia pickettii 12D | Ralstonia pickettii | 153, 66 |
| Ralstonia pickettii 12J | Ralstonia pickettii | 153, 66 |
| Ralstonia pickettii DTP0602 | Ralstonia pickettii | 153, 66 |
| Ralstonia pickettii OR214 | Ralstonia pickettii | 153, 66 |
| Ralstonia solanacearum | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum CFBP2957 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum CMR15 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum FQY_4 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum GMI1000 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum IPO1609 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum K60-1 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum MolK2 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum P673 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum phage RSA1 | Ralstonia phage phiRSA1 | 1, 0 |
| Ralstonia solanacearum Po82 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum PSI07 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum SD54 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum strain MolK2 | Ralstonia solanacearum | 241, 111 |
| Ralstonia solanacearum UW551 | Ralstonia solanacearum | 241, 111 |
| Ralstonia sp. 5_2_56FAA | Ralstonia sp. 5_2_56FAA | 54, 6 |
| Ralstonia sp. 5_7_47FAA | Ralstonia sp. 5_7_47FAA | 59, 6 |
| Ralstonia sp. CH34 | Cupriavidus metallidurans | 150, 62 |
| Ralstonia sp. JS705 | Ralstonia sp. JS705 | 1, 0 |
| Ralstonia sp. PBA | Ralstonia sp. PBA | 35, 6 |
| Ralstonia sp. SBUG 290 | Ralstonia sp. SBUG 290 | 1, 0 |
| Ralstonia sp. XJ12B | Ralstonia sp. XJ12B | 1, 0 |
| Ralstonia syzygii | Ralstonia syzygii | 49, 8 |
| Ralstonia syzygii R24 | Ralstonia syzygii | 49, 8 |
| Ralstonia taiwanensis | Cupriavidus taiwanensis | 94, 35 |
| Ramibacterium alactolyticum | Pseudoramibacter alactolyticus | 32, 3 |
| Ramibacterium dentium | Pseudoramibacter alactolyticus | 32, 3 |
| Ramibacterium pleuriticum | Pseudoramibacter alactolyticus | 32, 3 |
| Ramibacterium ramosum | Clostridium ramosum | 55, 13 |
| Ramlibacter tataouinensis | Ramlibacter tataouinensis | 93, 34 |
| Ramlibacter tataouinensis TTB310 | Ramlibacter tataouinensis | 93, 34 |
| ramtil | Guizotia abyssinica | 1, 0 |
| ramtilla | Guizotia abyssinica | 1, 0 |
| Rana catesbeiana | Rana catesbeiana | 12, 3 |
| Rana esculenta | Rana esculenta | 2, 0 |
| Rana esculenta synklepton | Rana esculenta | 2, 0 |
| Rana kl. esculenta | Rana esculenta | 2, 0 |
| Rana klepton esculenta | Rana esculenta | 2, 0 |
| Rana lessonae x Rana ridibunda | Rana esculenta | 2, 0 |
| Rana ridibunda | Rana ridibunda | 1, 1 |
| Rana ridibundus | Rana ridibunda | 1, 1 |
| Rana rugosa | Rana rugosa | 1, 0 |
| Rana synklepton esculenta | Rana esculenta | 2, 0 |
| Ranatra unicolor | Ranatra unicolor | 1, 0 |
| Ranunculus macranthus | Ranunculus macranthus | 1, 0 |
| Ranunculus macranthus Scheele | Ranunculus macranthus | 1, 0 |
| Raoultella planticola | Klebsiella planticola | 0, 1 |
| rape | Brassica napus | 16, 2 |
| rape, oil-seed | Brassica rapa | 12, 2 |
| rapeseeds | Brassica napus | 16, 2 |
| Raphanus sativus | Raphanus sativus | 6, 1 |
| Raphidiopsis brookii | Raphidiopsis brookii | 57, 11 |
| Raphidiopsis brookii D9 | Raphidiopsis brookii | 57, 11 |
| Raphidiopsis sp. PMC00.05 | Raphidiopsis sp. PMC00.05 | 1, 0 |
| Raptor adenovirus 1 | Raptor adenovirus 1 | 1, 0 |
| Raptor adenovirus A | Raptor adenovirus A | 1, 0 |
| Rarobacter faecitabidus | Rarobacter faecitabidus | 1, 0 |
| Rasamsonia emersonii | Talaromyces emersonii | 4, 0 |
| rasbora | Rasbora heteromorpha | 2, 0 |
| Rasbora elegans | Rasbora elegans | 2, 0 |
| Rasbora elegans Volz, 1903 | Rasbora elegans | 2, 0 |
| Rasbora heteromorpha | Rasbora heteromorpha | 2, 0 |
| Rasbora paviana | Rasbora paviei | 2, 0 |
| Rasbora paviei | Rasbora paviei | 2, 0 |
| rasbora, elegant | Rasbora elegans | 2, 0 |
| raspberry ringspot virus | raspberry ringspot virus | 1, 0 |
| raspberry ringspot virus RRV | raspberry ringspot virus | 1, 0 |
| rat | Rattus norvegicus | 677, 199 |
| Rat coronavirus | Murine coronavirus | 24, 0 |
| Rat coronavirus Parker | Rat coronavirus Parker | 6, 0 |
| Rat coronavirus strain Parker | Rat coronavirus Parker | 6, 0 |
| Rat cytomegalovirus | Murid herpesvirus 2 | 2, 0 |
| rat cytomegalovirus (strain Maastricht) | rat cytomegalovirus Maastricht | 1, 0 |
| rat cytomegalovirus Maastricht | rat cytomegalovirus Maastricht | 1, 0 |
| rat lungworm | Angiostrongylus cantonensis | 6, 0 |
| rat Moloney murine leukemia virus MoMuLV | Moloney murine leukemia virus | 1, 0 |
| rat sarcoma virus | rat sarcoma virus | 1, 0 |
| Rat theilovirus 1 | Theilovirus | 4, 16 |
| rat, African grass | Arvicanthis niloticus | 1, 0 |
| rat, African soft-furred | Mastomys natalensis | 3, 0 |
| rat, black | Rattus rattus | 2, 1 |
| rat, brown | Rattus norvegicus | 677, 199 |
| rat, brush-tailed | Octodon degus | 1, 0 |
| rat, common | Rattus norvegicus | 677, 199 |
| rat, hispid cotton | Sigmodon hispidus | 0, 1 |
| rat, laboratory | Rattus norvegicus | 677, 199 |
| rat-headed rice rat | Sooretamys angouya | 0, 3 |
| rats | Rattus norvegicus | 677, 199 |
| rats | Rattus sp. | 1, 1 |
| rattlesnake, eastern diamondback | Crotalus adamanteus | 14, 0 |
| rattlesnake, Mojave | Crotalus scutulatus | 0, 1 |
| rattlesnake, red | Crotalus ruber | 2, 0 |
| rattlesnake, tropical | Crotalus durissus terrificus | 9, 0 |
| rattlesnake, western diamondback | Crotalus atrox | 19, 0 |
| Rattus (Berylmys) berdmorei | Berylmys berdmorei | 1, 0 |
| Rattus berdmorei | Berylmys berdmorei | 1, 0 |
| Rattus brunneusculus | Rattus tanezumi | 0, 1 |
| Rattus fuscipes | Rattus fuscipes | 1, 0 |
| Rattus norvegicus | Rattus norvegicus | 677, 199 |
| Rattus rattoides | Rattus rattus | 2, 1 |
| Rattus rattus | Rattus rattus | 2, 1 |
| Rattus sp. | Rattus sp. | 1, 1 |
| Rattus surifer | Maxomys surifer | 1, 0 |
| Rattus tanezumi | Rattus tanezumi | 0, 1 |
| Rauscher murine leukemia virus | Rauscher murine leukemia virus | 1, 0 |
| Rauvolfia serpentina | Rauvolfia serpentina | 1, 0 |
| Rauvolfia serpentina (L.) Benth. ex Kurz | Rauvolfia serpentina | 1, 0 |
| Rauwolfia serpentina | Rauvolfia serpentina | 1, 0 |
| Ravenea hildebrandti | Ravenea hildebrandtii | 1, 0 |
| Ravenea hildebrandtii | Ravenea hildebrandtii | 1, 0 |
| Ravenea hildebrandtii H.Wendl. ex C.D.Bouche | Ravenea hildebrandtii | 1, 0 |
| ray, marbled electric | Torpedo marmorata | 0, 1 |
| rayado fino virus, maize | maize rayado fino virus | 1, 0 |
| RCMV | red clover mottle virus | 1, 0 |
| Recombinant chimeric Hepatitis C virus 1b/2a 432/JFH-1 | hepatitis C virus | 351, 4 |
| recombinant coronavirus | recombinant coronavirus | 5, 0 |
| Recombinant Hepatitis C virus 3a-2a (SA1/JFH1) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus DBN-JFH1 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus DH1-JFH1 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus DH5-JFH1 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus DH6-JFH1 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus ED43(5UTR-NS2)/JFH1_T827A,T977S | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus H77(5UTR-NS2)/JFH1_V787A,Q1247L | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus HK6a(5UTR-NS2)/JFH1_F350S,N417T | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus HK6a/JFH1 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J4(5UTR-NS2)/JFH1_F886L,Q1496L | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J4/JFH1 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6(5UTR-NS2)/JFH1 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(DH6-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(ED43-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(H77C-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(HCV1-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(HK6a-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(J1-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(J4-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(J6-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(QC69-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(S52-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(SA13-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1(TN-NS5A) | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1-452 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1-HK6a | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1-J6 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1-JCH2 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1-JCH4 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1-K3a.650 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1-NZL1 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1-S52 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J6/JFH1-SA13 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus J8/JFH1 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus QC69/JFH1 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus S52(5UTR-NS2)/JFH1_I793S, K1404Q | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus S52/JFH1 | Recombinant Hepatitis C virus S52/JFH1 | 1, 0 |
| Recombinant Hepatitis C virus SA13(5UTR-NS2)/JFH1_A1022G,K1119R | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C Virus SA13/JFH1 | hepatitis C virus | 351, 4 |
| Recombinant Hepatitis C virus TN-JFH1 | hepatitis C virus | 351, 4 |
| recombinant virus 6918VP60-T2 | recombinant virus 6918VP60-T2 | 2, 0 |
| Recombining vector pCRBAF1 | Recombining vector pCRBAF1 | 1, 0 |
| red abalone | Haliotis rufescens | 1, 0 |
| red baboon | Papio hamadryas | 4, 2 |
| red clover | Trifolium pratense | 6, 2 |
| red clover mottle virus | red clover mottle virus | 1, 0 |
| red clover mottle virus RCMV | red clover mottle virus | 1, 0 |
| Red clover vein mosaic virus | Red clover vein mosaic virus | 1, 0 |
| red cylinder snake | Cylindrophis ruffus | 1, 0 |
| red diamond rattlesnake | Crotalus ruber | 2, 0 |
| red fire ant | Solenopsis invicta | 149, 33 |
| red flour beetle | Tribolium castaneum | 336, 164 |
| red fox | Vulpes vulpes | 0, 1 |
| red guenon | Erythrocebus patas | 3, 0 |
| red imported fire ant | Solenopsis invicta | 149, 33 |
| red king crab | Paralithodes camtschatica | 6, 0 |
| red pepper | Capsicum annuum | 6, 2 |
| red pine | Pinus resinosa | 1, 0 |
| red piranha | Pygocentrus nattereri | 1, 0 |
| red porgy | Pagrus pagrus | 1, 0 |
| red postman butterfly | Heliconius erato | 1, 0 |
| red rattlesnake | Crotalus ruber | 2, 0 |
| red rice | Oryza rufipogon | 8, 5 |
| red ringspot virus, blueberry | blueberry red ringspot virus | 2, 0 |
| red seabream | Pagrus major | 8, 5 |
| red shanked douc langur | Pygathrix nemaeus | 2, 0 |
| Red shanked douc langur | Pygathrix nemaeus | 2, 0 |
| red spider mite | Tetranychus urticae | 0, 1 |
| red spiny rat | Maxomys surifer | 1, 0 |
| red stem pokeweed | Phytolacca americana | 2, 0 |
| red stomach worm | Haemonchus contortus | 35, 1 |
| red swamp crayfish | Procambarus clarkii | 1, 1 |
| red tail | Pagrus major | 8, 5 |
| red throated ascidian | Herdmania momus | 1, 0 |
| red wiggler worm | Eisenia foetida | 11, 0 |
| red-bellied black snake | Pseudechis porphyriacus | 3, 0 |
| red-bellied piranha | Pygocentrus nattereri | 1, 0 |
| Red-bellied titi | Callicebus moloch | 5, 1 |
| red-cheeked gibbon | Nomascus gabriellae | 2, 0 |
| red-chested mustached tamarin | Saguinus labiatus | 3, 0 |
| red-eared slider | Trachemys scripta | 2, 0 |
| red-eared slider turtle | Trachemys scripta | 2, 0 |
| red-headed rock agama | Agama agama | 1, 0 |
| red-spotted newt | Notophthalmus viridescens | 6, 0 |
| red-tailed pipe snake | Cylindrophis ruffus | 1, 0 |
| redworm | Eisenia foetida | 11, 0 |
| reed palm | Chamaedorea seifrizii | 1, 0 |
| Regiella insecticola | Candidatus Regiella insecticola | 56, 5 |
| Reinekea blandensis | Reinekea blandensis | 46, 14 |
| Reinekea blandensis MED297 | Reinekea blandensis | 46, 14 |
| Reishia clavigera | Reishia clavigera | 4, 1 |
| ren seng | Panax ginseng | 1, 0 |
| Rena humilis | Rena humilis | 1, 0 |
| Renealmia alpinia | Renealmia alpinia | 1, 0 |
| Renealmia alpinia (Rottb.) Maas | Renealmia alpinia | 1, 0 |
| Renibacterium salmoninarum | Renibacterium salmoninarum | 125, 40 |
| Renibacterium salmoninarum ATCC 33209 | Renibacterium salmoninarum | 125, 40 |
| Renibacterium salmoninarum Sanders and Fryer 1980 | Renibacterium salmoninarum | 125, 40 |
| Renilla muelleri | Renilla muelleri | 0, 1 |
| Renilla reniformis | Renilla reniformis | 0, 1 |
| Reovirus 1 | Mammalian orthoreovirus 1 | 1, 0 |
| Reovirus 3 | mammalian orthoreovirus 3 | 4, 0 |
| Reovirus GCRV104 | Reovirus GCRV104 | 1, 0 |
| Reovirus type 1 | Mammalian orthoreovirus 1 | 1, 0 |
| Reovirus type 3 | mammalian orthoreovirus 3 | 4, 0 |
| reperepe | Callorhinchus milii | 4, 0 |
| Reporter vector pCBTuMV-GFP | Reporter vector pCBTuMV-GFP | 4, 0 |
| reproductive and respiratory syndrome virus, porcine | porcine reproductive and respiratory syndrome virus | 46, 0 |
| Reptile vesivirus Cro1 | vesicular exanthema of swine virus | 3, 0 |
| respiratory and reproductive syndrome virus, porcine | porcine reproductive and respiratory syndrome virus | 46, 0 |
| resurrection grass | Sporobolus stapfianus | 1, 0 |
| reticuloendotheliosis virus | reticuloendotheliosis virus | 1, 1 |
| Reticuloendotheliosis virus | reticuloendotheliosis virus | 1, 1 |
| reticuloendotheliosis virus A REV-A | reticuloendotheliosis virus | 1, 1 |
| reticuloendotheliosis virus REV-A | reticuloendotheliosis virus | 1, 1 |
| reticuloendotheliosis virus, avian | reticuloendotheliosis virus | 1, 1 |
| retrovirus 5, human | human retrovirus HRV-5 | 1, 0 |
| retrovirus TvERV, Trichosurus vulpecula | Trichosurus vulpecula retrovirus TvERV | 1, 0 |
| retrovirus, jaagsiekte sheep | ovine pulmonary adenocarcinoma virus | 1, 0 |
| retrovirus, Phascolarctos cinereus | Phascolarctos cinereus retrovirus | 1, 0 |
| retrovirus, simian | simian type D virus 1 | 1, 0 |
| retrovirus, simian SRV-1 type D | simian SRV-1 type D retrovirus | 1, 0 |
| retrovirus, squirrel monkey | squirrel monkey retrovirus | 1, 0 |
| REV-A | reticuloendotheliosis virus | 1, 1 |
| Rhabditis elegans | Caenorhabditis elegans | 369, 143 |
| Rhabdophis tigrinus | Rhabdophis tigrinus | 1, 1 |
| Rhabdophis tigrinus tigrinus | Rhabdophis tigrinus | 1, 1 |
| rhadinovirus 17577, Macaca mulatta | Macaca mulatta rhadinovirus 17577 | 1, 0 |
| Rhechostica chalcodes | Aphonopelma chalcodes | 1, 0 |
| Rheinheimera nanhaiensis | Rheinheimera nanhaiensis | 53, 15 |
| Rheinheimera nanhaiensis E407-8 | Rheinheimera nanhaiensis | 53, 15 |
| Rheinheimera sp. A13L | Rheinheimera sp. A13L | 79, 14 |
| Rhesus cytomegalovirus | Rhesus cytomegalovirus | 2, 0 |
| Rhesus EBV-llike herpesvirus | Macacine herpesvirus 4 | 1, 0 |
| Rhesus Epstein Barr virus | Macacine herpesvirus 4 | 1, 0 |
| rhesus HHV-4-like virus | cercopithicine herpesvirus 15 | 1, 0 |
| Rhesus lymphocryptovirus | cercopithicine herpesvirus 15 | 1, 0 |
| rhesus macaque | Macaca mulatta | 780, 184 |
| Rhesus macaque cytomegalovirus | Rhesus cytomegalovirus | 2, 0 |
| rhesus macaque rhadinovirus | Cercopithecine herpesvirus 17 | 1, 0 |
| rhesus macaques | Macaca mulatta | 780, 184 |
| Rhesus monkey | Macaca mulatta | 780, 184 |
| Rhesus monkey cytomegalovirus | Rhesus cytomegalovirus | 2, 0 |
| rhesus monkeys | Macaca mulatta | 780, 184 |
| Rhesus rhadinovirus | Cercopithecine herpesvirus 17 | 1, 0 |
| Rhinella arenarum | Bufo arenarum | 1, 1 |
| Rhineura floridana | Rhineura floridana | 1, 0 |
| rhinitis A virus, equine | equine rhinovirus type 1 | 4, 1 |
| Rhinocephalus nigrescens | Rhinocephalus nigrescens | 1, 0 |
| Rhinocerophis alternatus | Bothrops alternatus | 1, 0 |
| Rhinolophus affinis pestivirus 1 | Rhinolophus affinis pestivirus 1 | 2, 0 |
| Rhinolophus ferrumequinum | Rhinolophus ferrumequinum | 8, 0 |
| Rhinolophus macrotis | Rhinolophus macrotis | 1, 0 |
| Rhinolophus pearsoni | Rhinolophus pearsonii | 1, 0 |
| Rhinolophus pearsonii | Rhinolophus pearsonii | 1, 0 |
| Rhinolophus pusillus | Rhinolophus pusillus | 1, 0 |
| Rhinolophus rouxii sinicus | Rhinolophus sinicus | 1, 0 |
| Rhinolophus ruwenzorii | Rhinolophus ruwenzorii | 1, 0 |
| Rhinolophus sinicus | Rhinolophus sinicus | 1, 0 |
| Rhinopithecus bieti | Rhinopithecus bieti | 1, 0 |
| Rhinoplocephalus nigrescens | Rhinoplocephalus nigrescens | 2, 0 |
| rhinovirus 1, equine | equine rhinovirus type 1 | 4, 1 |
| rhinovirus 10, human | human rhinovirus 10 | 3, 0 |
| rhinovirus 100, human | human rhinovirus 100 | 3, 0 |
| rhinovirus 11, human | human rhinovirus 11 | 3, 0 |
| rhinovirus 12, human | human rhinovirus 12 | 3, 0 |
| rhinovirus 13, human | human rhinovirus 13 | 3, 0 |
| rhinovirus 14, human | human rhinovirus 14 | 3, 0 |
| rhinovirus 15, human | human rhinovirus 15 | 3, 0 |
| rhinovirus 16, human | human rhinovirus 16 | 2, 0 |
| rhinovirus 17, human | human rhinovirus 17 | 3, 0 |
| rhinovirus 18, human | human rhinovirus 18 | 3, 0 |
| rhinovirus 19, human | human rhinovirus 19 | 3, 0 |
| rhinovirus 1a, human | human rhinovirus 1a | 3, 2 |
| rhinovirus 1b, human | human rhinovirus 1b | 3, 0 |
| rhinovirus 2, equine | equine rhinovirus type 2 | 1, 0 |
| rhinovirus 2, human | human rhinovirus 2 | 3, 0 |
| rhinovirus 20, human | human rhinovirus 20 | 3, 0 |
| rhinovirus 21, human | human rhinovirus 21 | 3, 0 |
| rhinovirus 22, human | human rhinovirus 22 | 3, 0 |
| rhinovirus 23, human | human rhinovirus 23 | 3, 0 |
| rhinovirus 24, human | human rhinovirus 24 | 3, 0 |
| rhinovirus 25, human | human rhinovirus 25 | 3, 0 |
| rhinovirus 26, human | human rhinovirus 26 | 3, 0 |
| rhinovirus 27, human | human rhinovirus 27 | 3, 0 |
| rhinovirus 28, human | human rhinovirus 28 | 3, 0 |
| rhinovirus 29, human | human rhinovirus 29 | 3, 0 |
| rhinovirus 3, equine | equine rhinovirus 3 | 1, 0 |
| rhinovirus 3, human | human rhinovirus 3 | 4, 0 |
| rhinovirus 30, human | human rhinovirus 30 | 3, 0 |
| rhinovirus 31, human | human rhinovirus 31 | 3, 0 |
| rhinovirus 32, human | human rhinovirus 32 | 3, 0 |
| rhinovirus 33, human | human rhinovirus 33 | 3, 0 |
| rhinovirus 34, human | human rhinovirus 34 | 3, 0 |
| rhinovirus 35, human | human rhinovirus 35 | 3, 0 |
| rhinovirus 36, human | human rhinovirus 36 | 3, 0 |
| rhinovirus 37, human | human rhinovirus 37 | 3, 0 |
| rhinovirus 38, human | human rhinovirus 38 | 3, 0 |
| rhinovirus 39, human | human rhinovirus 39 | 3, 0 |
| rhinovirus 4, human | human rhinovirus 4 | 3, 0 |
| rhinovirus 40, human | human rhinovirus 40 | 3, 0 |
| rhinovirus 41, human | human rhinovirus 41 | 3, 0 |
| rhinovirus 42, human | human rhinovirus 42 | 3, 0 |
| rhinovirus 43, human | human rhinovirus 43 | 3, 0 |
| rhinovirus 44, human | human rhinovirus 44 | 3, 0 |
| rhinovirus 45, human | human rhinovirus 45 | 3, 0 |
| rhinovirus 46, human | human rhinovirus 46 | 3, 0 |
| rhinovirus 47, human | human rhinovirus 47 | 3, 0 |
| rhinovirus 48, human | human rhinovirus 48 | 3, 0 |
| rhinovirus 49, human | human rhinovirus 49 | 3, 0 |
| rhinovirus 5, human | human rhinovirus 5 | 3, 0 |
| rhinovirus 50, human | human rhinovirus 50 | 3, 0 |
| rhinovirus 51, human | human rhinovirus 51 | 3, 0 |
| rhinovirus 52, human | human rhinovirus 52 | 3, 0 |
| rhinovirus 53, human | human rhinovirus 53 | 3, 0 |
| rhinovirus 54, human | human rhinovirus 54 | 3, 0 |
| rhinovirus 55, human | human rhinovirus 55 | 3, 0 |
| rhinovirus 56, human | human rhinovirus 56 | 3, 0 |
| rhinovirus 57, human | human rhinovirus 57 | 3, 0 |
| rhinovirus 58, human | human rhinovirus 58 | 3, 0 |
| rhinovirus 59, human | human rhinovirus 59 | 3, 0 |
| rhinovirus 6, human | human rhinovirus 6 | 3, 0 |
| rhinovirus 60, human | human rhinovirus 60 | 4, 0 |
| rhinovirus 61, human | human rhinovirus 61 | 3, 0 |
| rhinovirus 62, human | human rhinovirus 62 | 3, 0 |
| rhinovirus 63, human | human rhinovirus 63 | 3, 0 |
| rhinovirus 64, human | human rhinovirus 64 | 3, 0 |
| rhinovirus 65, human | human rhinovirus 65 | 3, 0 |
| rhinovirus 66, human | human rhinovirus 66 | 3, 0 |
| rhinovirus 67, human | human rhinovirus 67 | 3, 0 |
| rhinovirus 68, human | human rhinovirus 68 | 4, 0 |
| rhinovirus 69, human | human rhinovirus 69 | 3, 0 |
| rhinovirus 7, human | human rhinovirus 7 | 3, 0 |
| rhinovirus 70, human | human rhinovirus 70 | 3, 0 |
| rhinovirus 71, human | human rhinovirus 71 | 3, 0 |
| rhinovirus 72, human | human rhinovirus 72 | 3, 0 |
| rhinovirus 73, human | human rhinovirus 73 | 3, 0 |
| rhinovirus 74, human | human rhinovirus 74 | 3, 0 |
| rhinovirus 75, human | human rhinovirus 75 | 3, 0 |
| rhinovirus 76, human | human rhinovirus 76 | 3, 0 |
| rhinovirus 77, human | human rhinovirus 77 | 3, 0 |
| rhinovirus 78, human | human rhinovirus 78 | 3, 0 |
| rhinovirus 79, human | human rhinovirus 79 | 3, 0 |
| rhinovirus 8, human | human rhinovirus 8 | 3, 0 |
| rhinovirus 80, human | human rhinovirus 80 | 3, 0 |
| rhinovirus 81, human | human rhinovirus 81 | 3, 0 |
| rhinovirus 82, human | human rhinovirus 82 | 3, 0 |
| rhinovirus 83, human | human rhinovirus 83 | 3, 0 |
| rhinovirus 84, human | human rhinovirus 84 | 3, 0 |
| rhinovirus 85, human | human rhinovirus 85 | 3, 0 |
| rhinovirus 86, human | human rhinovirus 86 | 2, 0 |
| rhinovirus 88, human | human rhinovirus 88 | 3, 0 |
| rhinovirus 89, human | human rhinovirus 89 | 3, 0 |
| rhinovirus 9, human | human rhinovirus 9 | 3, 0 |
| rhinovirus 90, human | human rhinovirus 90 | 3, 0 |
| rhinovirus 91, human | human rhinovirus 91 | 3, 0 |
| rhinovirus 92, human | human rhinovirus 92 | 3, 0 |
| rhinovirus 93, human | human rhinovirus 93 | 3, 0 |
| rhinovirus 94, human | human rhinovirus 94 | 3, 0 |
| rhinovirus 95, human | human rhinovirus 95 | 4, 0 |
| rhinovirus 96, human | human rhinovirus 96 | 3, 0 |
| rhinovirus 97, human | human rhinovirus 97 | 3, 0 |
| rhinovirus 98, human | human rhinovirus 98 | 2, 0 |
| rhinovirus 99, human | human rhinovirus 99 | 3, 0 |
| Rhinovirus A | human rhinovirus A | 91, 95 |
| rhinovirus A1, human | human rhinovirus 1a | 3, 2 |
| Rhinovirus A98 | human rhinovirus A | 91, 95 |
| Rhinovirus B | human rhinovirus B | 33, 36 |
| rhinovirus B, human | human rhinovirus B | 33, 36 |
| Rhinovirus B14 | human rhinovirus B | 33, 36 |
| Rhinovirus B48 | human rhinovirus B | 33, 36 |
| Rhinovirus C | Human rhinovirus C | 19, 88 |
| rhinovirus strain Hanks, human | human rhinovirus strain Hanks | 1, 1 |
| rhinovirus type 1, equine | equine rhinovirus type 1 | 4, 1 |
| rhinovirus type 16, human | human rhinovirus 16 | 2, 0 |
| rhinovirus type 1A, human | human rhinovirus 1a | 3, 2 |
| rhinovirus type 2, equine | equine rhinovirus type 2 | 1, 0 |
| rhinovirus, human | human rhinovirus | 3, 1 |
| Rhiphicephalus sanguineus | Rhipicephalus sanguineus | 0, 1 |
| Rhipicephalus (Boophilus) microplus | Boophilus microplus | 7, 3 |
| Rhipicephalus appendiculatus | Rhipicephalus appendiculatus | 8, 1 |
| Rhipicephalus decoloratus | Boophilus decoloratus | 0, 1 |
| Rhipicephalus haemaphysaloides | Rhipicephalus haemaphysaloides | 2, 0 |
| Rhipicephalus haemaphysaloides (Supino, 1897) | Rhipicephalus haemaphysaloides | 2, 0 |
| Rhipicephalus haemaphysaloides haemaphysaloides | Rhipicephalus haemaphysaloides | 2, 0 |
| Rhipicephalus microplus | Boophilus microplus | 7, 3 |
| Rhipicephalus sanguineus | Rhipicephalus sanguineus | 0, 1 |
| Rhipicephalus sanguineus (Latreille, 1806) | Rhipicephalus sanguineus | 0, 1 |
| Rhizanthella gardneri | Rhizanthella gardneri | 3, 0 |
| Rhizobacterium leguminosarum | Rhizobium leguminosarum | 280, 137 |
| Rhizobium ciceri | Mesorhizobium ciceri | 146, 66 |
| Rhizobium etli | Rhizobium etli | 238, 63 |
| Rhizobium etli 8C-3 | Rhizobium etli | 238, 63 |
| Rhizobium etli Brasil 5 | Rhizobium etli | 238, 63 |
| Rhizobium etli bv. mimosae str. IE4771 | Rhizobium etli | 238, 63 |
| Rhizobium etli bv. mimosae str. Mim1 | Rhizobium etli | 238, 63 |
| Rhizobium etli bv. phaseoli str. IE4803 | Rhizobium etli | 238, 63 |
| Rhizobium etli CFN 42 | Rhizobium etli | 238, 63 |
| Rhizobium etli CIAT 652 | Rhizobium etli | 238, 63 |
| Rhizobium etli CIAT 894 | Rhizobium etli | 238, 63 |
| Rhizobium etli CNPAF512 | Rhizobium etli | 238, 63 |
| Rhizobium etli GR56 | Rhizobium etli | 238, 63 |
| Rhizobium etli IE4771 | Rhizobium etli | 238, 63 |
| Rhizobium etli Kim 5 | Rhizobium etli | 238, 63 |
| Rhizobium fredii | Sinorhizobium fredii | 97, 19 |
| Rhizobium japonicum | Bradyrhizobium japonicum | 236, 70 |
| Rhizobium leguminosarum | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. phaseoli CCGM1 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. trifolii | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. trifolii TA1 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. trifolii WSM1325 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. trifolii WSM1689 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. trifolii WSM2012 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. trifolii WSM2297 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. trifolii WSM2304 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. trifolii WSM597 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. trifolii WU95 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. viciae | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. viciae 3841 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. viciae USDA 2370 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium leguminosarum bv. viciae WSM1455 | Rhizobium leguminosarum | 280, 137 |
| Rhizobium loti | Mesorhizobium loti | 171, 109 |
| Rhizobium lupini | Rhizobium lupini | 1, 0 |
| Rhizobium lupini H13-3 | Agrobacterium sp. H13-3 | 84, 26 |
| Rhizobium lupini HPC(L) | Rhizobium lupini | 1, 0 |
| Rhizobium meliloti | Sinorhizobium meliloti | 194, 101 |
| Rhizobium phage 16-3 | Rhizobium phage 16-3 | 0, 1 |
| Rhizobium radiobacter | Agrobacterium tumefaciens | 394, 201 |
| Rhizobium rhizogenes | Agrobacterium rhizogenes | 2, 2 |
| Rhizobium rhizogenes NBRC 13257 | Agrobacterium rhizogenes | 2, 2 |
| Rhizobium sp. | Rhizobium sp. | 1, 0 |
| Rhizobium sp. AP16 | Rhizobium sp. AP16 | 58, 16 |
| Rhizobium sp. CF080 | Rhizobium sp. CF080 | 52, 21 |
| Rhizobium sp. CF122 | Rhizobium sp. CF122 | 46, 7 |
| Rhizobium sp. CF142 | Rhizobium sp. CF142 | 52, 13 |
| Rhizobium sp. DS-S-51 | Rhizobium sp. DS-S-51 | 1, 0 |
| Rhizobium sp. PDO-076 | Rhizobium sp. PDO1-076 | 58, 11 |
| Rhizobium sp. PDO1-076 | Rhizobium sp. PDO1-076 | 58, 11 |
| Rhizobium sp. TAL1145 | Rhizobium sp. TAL1145 | 1, 0 |
| Rhizobium trifoli | Rhizobium leguminosarum | 280, 137 |
| Rhizobium trifolii | Rhizobium leguminosarum | 280, 137 |
| Rhizobium vitis | Agrobacterium vitis | 89, 39 |
| Rhizoctonia solani | Thanatephorus cucumeris | 0, 1 |
| Rhizoctonia solani AG-1 IA | Thanatephorus cucumeris | 0, 1 |
| Rhizomucor miehei | Rhizomucor miehei | 1, 0 |
| Rhizomucor pusillus | Rhizomucor pusillus | 1, 0 |
| Rhizomucor racemosus | Mucor racemosus | 1, 0 |
| Rhizoplaca chrysoleuca | Rhizoplaca chrysoleuca | 1, 0 |
| Rhizopus arrhizus | Rhizopus oryzae | 132, 17 |
| Rhizopus arrhizus var. arrhizus | Rhizopus oryzae | 132, 17 |
| Rhizopus chiuniang | Rhizopus oryzae | 132, 17 |
| Rhizopus delemar | Rhizopus oryzae | 132, 17 |
| Rhizopus elegans | Actinomucor elegans | 1, 0 |
| Rhizopus formosaensis | Rhizopus oryzae | 132, 17 |
| Rhizopus formosaensis var. chlamydosporus | Rhizopus oryzae | 132, 17 |
| Rhizopus hangchow | Rhizopus oryzae | 132, 17 |
| Rhizopus javanicus Y. Takeda | Rhizopus oryzae | 132, 17 |
| Rhizopus liquefaciens | Rhizopus oryzae | 132, 17 |
| Rhizopus microsporus | Rhizopus microsporus | 4, 0 |
| Rhizopus microsporus ATCC 52813 | Rhizopus microsporus | 4, 0 |
| Rhizopus microsporus var. chinensis | Rhizopus microsporus | 4, 0 |
| Rhizopus microsporus var. microsporus | Rhizopus microsporus | 4, 0 |
| Rhizopus niveus | Rhizopus niveus | 5, 1 |
| Rhizopus oryzae | Rhizopus oryzae | 132, 17 |
| Rhizopus oryzae RA 99-880 | Rhizopus oryzae | 132, 17 |
| Rhizopus peka | Rhizopus oryzae | 132, 17 |
| Rhizopus pseudochinensis | Rhizopus oryzae | 132, 17 |
| Rhizopus rhizopodiformis | Rhizopus microsporus | 4, 0 |
| Rhizopus suinus | Rhizopus oryzae | 132, 17 |
| Rhizopus tamarii | Rhizopus oryzae | 132, 17 |
| Rhizopus thermosus | Rhizopus oryzae | 132, 17 |
| Rhizopus tritici | Rhizopus oryzae | 132, 17 |
| Rhodanobacter denitrificans | Rhodanobacter denitrificans | 59, 8 |
| Rhodanobacter fulvus | Rhodanobacter fulvus | 39, 7 |
| Rhodanobacter fulvus Jip2 | Rhodanobacter fulvus | 39, 7 |
| Rhodanobacter sp. 115 | Rhodanobacter sp. 115 | 59, 3 |
| Rhodanobacter sp. 116-2 | Rhodanobacter denitrificans | 59, 8 |
| Rhodanobacter sp. 2APBS1 | Rhodanobacter denitrificans | 59, 8 |
| Rhodanobacter spathiphylli | Rhodanobacter spathiphylli | 59, 8 |
| Rhodanobacter spathiphylli B39 | Rhodanobacter spathiphylli | 59, 8 |
| Rhodanobacter thiooxydans | Rhodanobacter thiooxydans | 55, 7 |
| Rhodanobacter thiooxydans LCS2 | Rhodanobacter thiooxydans | 55, 7 |
| Rhodinia fugax | Rhodinia fugax | 1, 0 |
| Rhodnius prolixus | Rhodnius prolixus | 2, 2 |
| Rhodobacillus palustris | Rhodopseudomonas palustris | 545, 181 |
| Rhodobacter capsulatus | Rhodobacter capsulatus | 81, 34 |
| Rhodobacter capsulatus B6 | Rhodobacter capsulatus | 81, 34 |
| Rhodobacter capsulatus DE442 | Rhodobacter capsulatus | 81, 34 |
| Rhodobacter capsulatus R121 | Rhodobacter capsulatus | 81, 34 |
| Rhodobacter capsulatus SB 1003 | Rhodobacter capsulatus | 81, 34 |
| Rhodobacter capsulatus SB1003 | Rhodobacter capsulatus | 81, 34 |
| Rhodobacter capsulatus Y262 | Rhodobacter capsulatus | 81, 34 |
| Rhodobacter capsulatus YW1 | Rhodobacter capsulatus | 81, 34 |
| Rhodobacter capsulatus YW2 | Rhodobacter capsulatus | 81, 34 |
| Rhodobacter palustris | Rhodopseudomonas palustris | 545, 181 |
| Rhodobacter sp. SW2 | Rhodobacter sp. SW2 | 41, 6 |
| Rhodobacter sphaeroides | Rhodobacter sphaeroides | 184, 94 |
| Rhodobacter sphaeroides 2.4.1 | Rhodobacter sphaeroides | 184, 94 |
| Rhodobacter sphaeroides ATCC 17025 | Rhodobacter sphaeroides | 184, 94 |
| Rhodobacter sphaeroides ATCC 17029 | Rhodobacter sphaeroides | 184, 94 |
| Rhodobacter sphaeroides KD131 | Rhodobacter sphaeroides | 184, 94 |
| Rhodobacter sphaeroides WS8N | Rhodobacter sphaeroides | 184, 94 |
| Rhodobacter sulfidiphilus | Rhodovulum sulfidophilum | 1, 0 |
| Rhodobacter sulfidophilus | Rhodovulum sulfidophilum | 1, 0 |
| Rhodobacteraceae bacterium 198 | Rhodobacteraceae bacterium 198 | 0, 1 |
| Rhodobacteraceae bacterium HTCC2083 | Rhodobacterales bacterium HTCC2083 | 51, 28 |
| Rhodobacteraceae bacterium HTCC2150 | Rhodobacterales bacterium HTCC2150 | 49, 8 |
| Rhodobacteraceae bacterium KLH11 | Rhodobacteraceae bacterium KLH11 | 52, 27 |
| Rhodobacterales bacterium HTCC2083 | Rhodobacterales bacterium HTCC2083 | 51, 28 |
| Rhodobacterales bacterium HTCC2150 | Rhodobacterales bacterium HTCC2150 | 49, 8 |
| Rhodobacterales bacterium HTCC2255 | Rhodobacterales bacterium HTCC2255 | 89, 18 |
| Rhodobacterales bacterium KLH11 | Rhodobacteraceae bacterium KLH11 | 52, 27 |
| Rhodobacterales bacterium Y4I | Rhodobacterales bacterium Y4I | 55, 26 |
| Rhodobacterales proteobacterium HTCC2255 | Rhodobacterales bacterium HTCC2255 | 89, 18 |
| Rhodobacterium capsulatum | Rhodopseudomonas palustris | 545, 181 |
| Rhodocista centenaria | Rhodospirillum centenum | 106, 55 |
| Rhodococcus aetherivorans | Rhodococcus aetherivorans | 1, 0 |
| Rhodococcus aetherivorans I24 | Rhodococcus aetherivorans | 1, 0 |
| Rhodococcus aurantiacus | Tsukamurella paurometabola | 134, 71 |
| Rhodococcus aurantiacus (ex Tsukamura and Mizuno 1971) Tsukamura and Yano 1985 | Tsukamurella paurometabola | 134, 71 |
| Rhodococcus bacteriophage REQ1 | Rhodococcus phage REQ1 | 2, 0 |
| Rhodococcus bacteriophage RER2 | Rhodococcus phage RER2 | 1, 0 |
| Rhodococcus bacteriophage RGL3 | Rhodococcus phage RGL3 | 1, 0 |
| Rhodococcus bronchialis | Gordonia bronchialis | 142, 88 |
| Rhodococcus capsulatus | Rhodobacter sphaeroides | 184, 94 |
| Rhodococcus chubuensis | Gordonia sputi | 41, 8 |
| Rhodococcus equi | Rhodococcus equi | 153, 62 |
| Rhodococcus equi 103S | Rhodococcus equi | 153, 62 |
| Rhodococcus equi ATCC 33707 | Rhodococcus equi | 153, 62 |
| Rhodococcus equi NBRC 101255 = C 7 | Rhodococcus equi | 153, 62 |
| Rhodococcus erythropolis | Rhodococcus erythropolis | 229, 126 |
| Rhodococcus erythropolis CCM2595 | Rhodococcus erythropolis | 229, 126 |
| Rhodococcus erythropolis DN1 | Rhodococcus erythropolis | 229, 126 |
| Rhodococcus erythropolis PR4 | Rhodococcus erythropolis | 229, 126 |
| Rhodococcus erythropolis R138 | Rhodococcus erythropolis | 229, 126 |
| Rhodococcus erythropolis SK121 | Rhodococcus erythropolis | 229, 126 |
| Rhodococcus fascians | Rhodococcus fascians | 3, 0 |
| Rhodococcus fascians D188 | Rhodococcus fascians | 3, 0 |
| Rhodococcus globerulus | Rhodococcus globerulus | 1, 0 |
| Rhodococcus hoagii | Rhodococcus equi | 153, 62 |
| Rhodococcus hoagii NBRC 101255 = C 7 | Rhodococcus equi | 153, 62 |
| Rhodococcus imtechensis | Rhodococcus imtechensis | 60, 15 |
| Rhodococcus imtechensis RKJ300 | Rhodococcus imtechensis | 60, 15 |
| Rhodococcus imtechensis RKJ300 = JCM 13270 | Rhodococcus imtechensis | 60, 15 |
| Rhodococcus jostii | Rhodococcus jostii | 240, 141 |
| Rhodococcus jostii RHA1 | Rhodococcus jostii | 240, 141 |
| Rhodococcus lentifragmentus | Rhodococcus ruber | 1, 0 |
| Rhodococcus luteus | Rhodococcus fascians | 3, 0 |
| Rhodococcus M5 | Rhodococcus sp. M5 | 1, 0 |
| Rhodococcus minor | Rhodobacter sphaeroides | 184, 94 |
| Rhodococcus obuensis | Gordonia sputi | 41, 8 |
| Rhodococcus opacus | Rhodococcus opacus | 280, 153 |
| Rhodococcus opacus B4 | Rhodococcus opacus | 280, 153 |
| Rhodococcus opacus M213 | Rhodococcus opacus | 280, 153 |
| Rhodococcus opacus PD630 | Rhodococcus opacus | 280, 153 |
| Rhodococcus phage REQ1 | Rhodococcus phage REQ1 | 2, 0 |
| Rhodococcus phage RER2 | Rhodococcus phage RER2 | 1, 0 |
| Rhodococcus phage RGL3 | Rhodococcus phage RGL3 | 1, 0 |
| Rhodococcus pyridinivorans | Rhodococcus pyridinivorans | 47, 6 |
| Rhodococcus pyridinivorans AK37 | Rhodococcus pyridinivorans | 47, 6 |
| Rhodococcus pyridinivorans KG-16 | Rhodococcus pyridinivorans | 47, 6 |
| Rhodococcus pyridinivorans SB3094 | Rhodococcus pyridinivorans | 47, 6 |
| Rhodococcus rhodochrous | Rhodococcus rhodochrous | 3, 4 |
| Rhodococcus rhodochrous ATCC 21198 | Rhodococcus rhodochrous | 3, 4 |
| Rhodococcus rhodochrous J3 | Rhodococcus rhodochrous | 3, 4 |
| Rhodococcus rhodochrous KG-21 | Rhodococcus rhodochrous | 3, 4 |
| Rhodococcus roseus | Rhodococcus rhodochrous | 3, 4 |
| Rhodococcus ruber | Rhodococcus ruber | 1, 0 |
| Rhodococcus ruber BKS 20-38 | Rhodococcus ruber | 1, 0 |
| Rhodococcus ruber Chol-4 | Rhodococcus ruber | 1, 0 |
| Rhodococcus sp. | Rhodococcus sp. | 6, 1 |
| Rhodococcus sp. B264-1 | Rhodococcus sp. | 6, 1 |
| Rhodococcus sp. CDT3 | Rhodococcus sp. CDT3 | 1, 0 |
| Rhodococcus sp. DFA3 | Rhodococcus sp. DFA3 | 0, 1 |
| Rhodococcus sp. DK17 | Rhodococcus sp. DK17 | 1, 1 |
| Rhodococcus sp. JVH1 | Rhodococcus sp. JVH1 | 55, 11 |
| Rhodococcus sp. M5 | Rhodococcus sp. M5 | 1, 0 |
| Rhodococcus sp. MB1 ’Bresler 1999’ | Rhodococcus sp. MB1 ’Bresler 1999’ | 1, 0 |
| Rhodococcus sp. MB1 Bresler 1999 | Rhodococcus sp. MB1 ’Bresler 1999’ | 1, 0 |
| Rhodococcus sp. NS1 | Rhodococcus sp. NS1 | 2, 0 |
| Rhodococcus sp. Phi2 | Rhodococcus sp. Phi2 | 0, 1 |
| Rhodococcus sp. PY11 | Rhodococcus sp. PY11 | 2, 0 |
| Rhodococcus sp. S9 | Rhodococcus sp. S9 | 1, 0 |
| Rhodococcus sp. strain M5 | Rhodococcus sp. M5 | 1, 0 |
| Rhodococcus sp. YK2 | Rhodococcus sp. YK2 | 2, 1 |
| Rhodococcus sputi | Gordonia sputi | 41, 8 |
| Rhodococcus terrae | Gordonia terrae | 41, 7 |
| Rhodocyclus gelatinosus | Rubrivivax gelatinosus | 86, 50 |
| Rhodocystis gelatinosa | Rubrivivax gelatinosus | 86, 50 |
| Rhodoferax ferrireducens | Rhodoferax ferrireducens | 105, 35 |
| Rhodoferax ferrireducens DSM 15236 | Rhodoferax ferrireducens | 105, 35 |
| Rhodoferax ferrireducens T118 | Rhodoferax ferrireducens | 105, 35 |
| Rhodomicrobium vannielii | Rhodomicrobium vannielii | 58, 12 |
| Rhodomicrobium vannielii ATCC 17100 | Rhodomicrobium vannielii | 58, 12 |
| Rhodomonas palustris | Rhodopseudomonas palustris | 545, 181 |
| Rhodomonas salina | Rhodomonas salina | 2, 2 |
| Rhodonia placenta | Postia placenta | 74, 36 |
| Rhodonostoc capsulatum | Rhodobacter capsulatus | 81, 34 |
| Rhodopirellula baltica | Rhodopirellula baltica | 152, 59 |
| Rhodopirellula baltica SH 1 | Rhodopirellula baltica | 152, 59 |
| Rhodopirellula baltica SH28 | Rhodopirellula baltica | 152, 59 |
| Rhodopirellula baltica SWK14 | Rhodopirellula baltica | 152, 59 |
| Rhodopirellula baltica WH47 | Rhodopirellula baltica | 152, 59 |
| Rhodopseudomonas capsulata | Rhodobacter capsulatus | 81, 34 |
| Rhodopseudomonas capsulatus | Rhodobacter capsulatus | 81, 34 |
| Rhodopseudomonas gelatinosa | Rubrivivax gelatinosus | 86, 50 |
| Rhodopseudomonas palustris | Rhodopseudomonas palustris | 545, 181 |
| Rhodopseudomonas palustris BisA53 | Rhodopseudomonas palustris | 545, 181 |
| Rhodopseudomonas palustris BisB18 | Rhodopseudomonas palustris | 545, 181 |
| Rhodopseudomonas palustris BisB5 | Rhodopseudomonas palustris | 545, 181 |
| Rhodopseudomonas palustris CGA009 | Rhodopseudomonas palustris | 545, 181 |
| Rhodopseudomonas palustris DX-1 | Rhodopseudomonas palustris | 545, 181 |
| Rhodopseudomonas palustris HaA2 | Rhodopseudomonas palustris | 545, 181 |
| Rhodopseudomonas palustris Rpal_1 | Rhodopseudomonas palustris | 545, 181 |
| Rhodopseudomonas palustris TIE-1 | Rhodopseudomonas palustris | 545, 181 |
| Rhodopseudomonas rutila | Rhodopseudomonas palustris | 545, 181 |
| Rhodopseudomonas sphaeroides | Rhodobacter sphaeroides | 184, 94 |
| Rhodopseudomonas spheroides | Rhodobacter sphaeroides | 184, 94 |
| Rhodopseudomonas sulfidophila | Rhodovulum sulfidophilum | 1, 0 |
| Rhodorhagus capsulatus | Rhodobacter sphaeroides | 184, 94 |
| Rhodorhagus minor | Rhodobacter sphaeroides | 184, 94 |
| Rhodorrhagus capsulatus | Rhodobacter sphaeroides | 184, 94 |
| Rhodorrhagus spheroides | Rhodobacter sphaeroides | 184, 94 |
| Rhodosphaera capsulata | Rhodobacter sphaeroides | 184, 94 |
| Rhodosphaera minor | Rhodobacter sphaeroides | 184, 94 |
| Rhodospirillum centenum | Rhodospirillum centenum | 106, 55 |
| Rhodospirillum centenum SW | Rhodospirillum centenum | 106, 55 |
| Rhodospirillum giganteum | Rhodospirillum rubrum | 78, 17 |
| Rhodospirillum gracile | Rhodospirillum rubrum | 78, 17 |
| Rhodospirillum longum | Rhodospirillum rubrum | 78, 17 |
| Rhodospirillum molischianum | Phaeospirillum molischianum | 38, 2 |
| Rhodospirillum photometricum | Rhodospirillum photometricum | 47, 37 |
| Rhodospirillum photometricum DSM 122 | Rhodospirillum photometricum | 47, 37 |
| Rhodospirillum rubrum | Rhodospirillum rubrum | 78, 17 |
| Rhodospirillum rubrum ATCC 11170 | Rhodospirillum rubrum | 78, 17 |
| Rhodospirillum rubrum F11 | Rhodospirillum rubrum | 78, 17 |
| Rhodosporidium paludigenum | Rhodosporidium paludigenum | 0, 1 |
| Rhodosporidium toruloides | Rhodosporidium toruloides | 0, 1 |
| Rhodosporidium toruloides (strain NP11) | Rhodosporidium toruloides | 0, 1 |
| Rhodosporidium toruloides NP11 | Rhodosporidium toruloides | 0, 1 |
| Rhodothermus marinus | Rhodothermus marinus | 143, 80 |
| Rhodothermus marinus DSM 4252 | Rhodothermus marinus | 143, 80 |
| Rhodothermus marinus SG0.5JP17-172 | Rhodothermus marinus | 143, 80 |
| Rhodothermus obamae | Rhodothermus marinus | 143, 80 |
| Rhodothermus obamensis | Rhodothermus marinus | 143, 80 |
| Rhodothermus phage RM378 | Bacteriophage RM 378 | 1, 0 |
| Rhodothermus sp. | Rhodothermus sp. | 1, 0 |
| Rhodothermus sp. ITI 518 | Rhodothermus sp. | 1, 0 |
| Rhodothermus sp. XMH10 | Rhodothermus sp. XMH10 | 1, 0 |
| Rhodotorula araucariae | Rhodotorula araucariae | 0, 1 |
| Rhodotorula glutinis | Rhodotorula glutinis | 28, 7 |
| Rhodotorula glutinis ATCC 204091 | Rhodotorula glutinis | 28, 7 |
| Rhodotorula gracilis | Rhodosporidium toruloides | 0, 1 |
| Rhodotorula mucilaginosa | Rhodotorula mucilaginosa | 1, 0 |
| Rhodotorula pilimanae | Rhodotorula mucilaginosa | 1, 0 |
| Rhodotorula rubescens | Rhodosporidium toruloides | 0, 1 |
| Rhodotorula rubra | Rhodotorula mucilaginosa | 1, 0 |
| Rhodotorula toruloides | Rhodosporidium toruloides | 0, 1 |
| Rhodovibrio parvus | Rhodopseudomonas palustris | 545, 181 |
| Rhodovulum sulfidophilum | Rhodovulum sulfidophilum | 1, 0 |
| Rhombus maximus | Scophthalmus maximus | 6, 1 |
| Rhopalosiphum padi | Rhopalosiphum padi | 0, 1 |
| Rhopalosiphum padi (Linnaeus, 1758) | Rhopalosiphum padi | 0, 1 |
| Rhopalosiphum padi virus | Rhopalosiphum padi virus | 1, 0 |
| Rhynchoryza subulata | Rhynchoryza subulata | 1, 0 |
| Rhyzopertha dominica | Rhyzopertha dominica | 4, 0 |
| Ribes nigrum | Ribes nigrum | 1, 0 |
| rice | Oryza sativa | 794, 489 |
| rice blast fungus | Magnaporthe oryzae | 162, 40 |
| rice cutgrass | Leersia oryzoides | 1, 0 |
| rice leaffolder | Cnaphalocrocis medinalis | 3, 0 |
| Rice stripe necrosis virus | Rice stripe necrosis virus | 1, 0 |
| rice tungro bacilliform virus | rice tungro bacilliform virus | 2, 0 |
| rice tungro bacilliform virus, RTBV | rice tungro bacilliform virus | 2, 0 |
| rice tungro spherical virus | rice tungro spherical virus | 1, 0 |
| rice tungro spherical virus RTSV | rice tungro spherical virus | 1, 0 |
| rice tungro spherical waikavirus | rice tungro spherical virus | 1, 0 |
| rice weevil | Sitophilus oryzae | 4, 1 |
| rice yellow mottle virus | rice yellow mottle virus | 2, 0 |
| rice, African | Oryza glaberrima | 3, 0 |
| rice, African wild | Oryza barthii | 2, 0 |
| rice, common wild | Oryza rufipogon | 8, 5 |
| rice, long-staminate | Oryza longistaminata | 2, 0 |
| rice, red | Oryza rufipogon | 8, 5 |
| rice-field eel | Monopterus albus | 1, 0 |
| ricefield mouse | Mus caroli | 1, 1 |
| Richelia sp. AO9565 | Richelia sp. AO9565 | 1, 0 |
| Richelia sp. PO9804-4 | Richelia sp. PO9804-4 | 1, 0 |
| Richelia sp. PO9804-5 | Richelia sp. PO9804-5 | 1, 0 |
| Richelia sp. PO9811-3 | Richelia sp. PO9811-3 | 1, 0 |
| Richelia sp. PO9814-5 | Richelia sp. PO9814-5 | 1, 0 |
| Richelia sp. PO9847-2 | Richelia sp. PO9847-2 | 1, 0 |
| Richelia sp. PO9847-3 | Richelia sp. PO9847-3 | 1, 0 |
| Richelia sp. PO9847-9 | Richelia sp. PO9847-9 | 1, 0 |
| Ricinus communis | Ricinus communis | 375, 123 |
| Ricinus communis L. | Ricinus communis | 375, 123 |
| Ricinus sanguineus | Ricinus communis | 375, 123 |
| Ricinus sanguineus hort. ex Groenl. | Ricinus communis | 375, 123 |
| Rickettsia africae | Rickettsia africae | 36, 7 |
| Rickettsia africae ESF-5 | Rickettsia africae | 36, 7 |
| Rickettsia akamushi | Rickettsia tsutsugamushi | 23, 7 |
| Rickettsia akari | Rickettsia akari | 31, 3 |
| Rickettsia akari Hartford | Rickettsia akari | 31, 3 |
| Rickettsia akari str. Hartford | Rickettsia akari | 31, 3 |
| Rickettsia amblyommatis | Candidatus Rickettsia amblyommii | 21, 12 |
| Rickettsia amblyommii | Candidatus Rickettsia amblyommii | 21, 12 |
| Rickettsia australis | Rickettsia australis | 25, 9 |
| Rickettsia australis Cutlack | Rickettsia australis | 25, 9 |
| Rickettsia australis str. Cutlack | Rickettsia australis | 25, 9 |
| Rickettsia azadi | Rickettsia felis | 41, 3 |
| Rickettsia bellii | Rickettsia bellii | 42, 6 |
| Rickettsia bellii OSU 85-389 | Rickettsia bellii | 42, 6 |
| Rickettsia bellii RML369-C | Rickettsia bellii | 42, 6 |
| Rickettsia bellii str. RML An4 | Rickettsia bellii | 42, 6 |
| Rickettsia bellii str. RML Mogi | Rickettsia bellii | 42, 6 |
| Rickettsia burneti | Coxiella burnetii | 56, 52 |
| Rickettsia canada | Rickettsia canadensis | 33, 5 |
| Rickettsia canadensis | Rickettsia canadensis | 33, 5 |
| Rickettsia canadensis CA410 | Rickettsia canadensis | 33, 5 |
| Rickettsia canadensis McKiel | Rickettsia canadensis | 33, 5 |
| Rickettsia canadensis str. CA410 | Rickettsia canadensis | 33, 5 |
| Rickettsia canadensis str. McKiel | Rickettsia canadensis | 33, 5 |
| Rickettsia canis | Ehrlichia canis | 23, 7 |
| Rickettsia conorii | Rickettsia conorii | 36, 7 |
| Rickettsia conorii Malish 7 | Rickettsia conorii | 36, 7 |
| Rickettsia conorii str. Malish 7 | Rickettsia conorii | 36, 7 |
| Rickettsia diaporica | Coxiella burnetii | 56, 52 |
| Rickettsia endosymbiont of Ixodes scapularis | Rickettsia endosymbiont of Ixodes scapularis | 23, 1 |
| Rickettsia felis | Rickettsia felis | 41, 3 |
| Rickettsia felis str. Pedreira | Rickettsia felis | 41, 3 |
| Rickettsia felis URRWXCal2 | Rickettsia felis | 41, 3 |
| Rickettsia heilongjiangensis | Rickettsia heilongjiangensis | 29, 5 |
| Rickettsia heilongjiangensis 054 | Rickettsia heilongjiangensis | 29, 5 |
| Rickettsia heilongjiangii | Rickettsia heilongjiangensis | 29, 5 |
| Rickettsia japonica | Rickettsia japonica | 29, 5 |
| Rickettsia japonica YH | Rickettsia japonica | 29, 5 |
| Rickettsia massiliae | Rickettsia massiliae | 37, 2 |
| Rickettsia massiliae AZT80 | Rickettsia massiliae | 37, 2 |
| Rickettsia massiliae MTU5 | Rickettsia massiliae | 37, 2 |
| Rickettsia massiliae str. AZT80 | Rickettsia massiliae | 37, 2 |
| Rickettsia montana | Rickettsia montanensis | 24, 10 |
| Rickettsia montanensis | Rickettsia montanensis | 24, 10 |
| Rickettsia montanensis OSU 85-930 | Rickettsia montanensis | 24, 10 |
| Rickettsia montanensis str. OSU 85-930 | Rickettsia montanensis | 24, 10 |
| Rickettsia mooseri | Rickettsia typhi | 30, 5 |
| Rickettsia orientalis | Rickettsia tsutsugamushi | 23, 7 |
| Rickettsia parkeri | Rickettsia parkeri | 23, 10 |
| Rickettsia parkeri Portsmouth | Rickettsia parkeri | 23, 10 |
| Rickettsia parkeri str. AT#24 | Rickettsia parkeri | 23, 10 |
| Rickettsia parkeri str. Grand Bay | Rickettsia parkeri | 23, 10 |
| Rickettsia parkeri str. Portsmouth | Rickettsia parkeri | 23, 10 |
| Rickettsia parkeri str. Tates Hell | Rickettsia parkeri | 23, 10 |
| Rickettsia peacockii | Rickettsia peacockii | 30, 5 |
| Rickettsia peacockii Rustic | Rickettsia peacockii | 30, 5 |
| Rickettsia peacockii str. Rustic | Rickettsia peacockii | 30, 5 |
| Rickettsia pediculi | Bartonella quintana | 41, 11 |
| Rickettsia phagocytophila | Anaplasma phagocytophilum | 22, 6 |
| Rickettsia phagocytophila ovis | Anaplasma phagocytophilum | 22, 6 |
| Rickettsia philipii | Rickettsia philipii | 23, 11 |
| Rickettsia philipii 364D | Rickettsia philipii | 23, 11 |
| Rickettsia philipii str. 364D | Rickettsia philipii | 23, 11 |
| Rickettsia prowazekii | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii BuV67-CWPP | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii Chernikova | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii Dachau | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii GvV257 | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii Katsinyian | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii Madrid E | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii Rp22 | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii RpGvF24 | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. Breinl | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. BuV67-CWPP | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. Cairo 3 | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. Chernikova | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. Dachau | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. GvF12 | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. GvV257 | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. Katsinyian | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. Madrid E | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. NMRC Madrid E | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. Rp22 | Rickettsia prowazekii | 33, 4 |
| Rickettsia prowazekii str. RpGvF24 | Rickettsia prowazekii | 33, 4 |
| Rickettsia psittaci | Chlamydophila psittaci | 21, 13 |
| Rickettsia quintana | Bartonella quintana | 41, 11 |
| Rickettsia rhipicephali | Rickettsia rhipicephali | 25, 11 |
| Rickettsia rhipicephali 3-7-female6-CWPP | Rickettsia rhipicephali | 25, 11 |
| Rickettsia rhipicephali str. 3-7-female6-CWPP | Rickettsia rhipicephali | 25, 11 |
| Rickettsia rhipicephali str. Ect | Rickettsia rhipicephali | 25, 11 |
| Rickettsia rickettsii | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii ’Sheila Smith’ | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii (Wolbach 1919) Brumpt 1922 | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii Arizona | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii Brazil | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii Colombia | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii Hauke | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii Hino | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii Hlp#2 | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii Iowa | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii str. ’Sheila Smith’ | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii str. Arizona | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii str. Brazil | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii str. Colombia | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii str. Hauke | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii str. Hino | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii str. Hlp#2 | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii str. Iowa | Rickettsia rickettsii | 40, 1 |
| Rickettsia rickettsii str. Sheila Smith | Rickettsia rickettsii | 40, 1 |
| Rickettsia ruminantium | Ehrlichia ruminantium | 26, 11 |
| Rickettsia sennetsu | Neorickettsia sennetsu | 26, 2 |
| Rickettsia sennetsu Misao and Kobayashi 1956 (Approved Lists 1980) | Neorickettsia sennetsu | 26, 2 |
| Rickettsia sibirica | Rickettsia sibirica | 34, 5 |
| Rickettsia sibirica 246 | Rickettsia sibirica | 34, 5 |
| Rickettsia slovaca | Rickettsia slovaca | 35, 5 |
| Rickettsia slovaca 13-B | Rickettsia slovaca | 35, 5 |
| Rickettsia slovaca D-CWPP | Rickettsia slovaca | 35, 5 |
| Rickettsia slovaca str. D-CWPP | Rickettsia slovaca | 35, 5 |
| Rickettsia sp. ELB | Rickettsia felis | 41, 3 |
| Rickettsia trachomae | Chlamydia trachomatis | 32, 11 |
| Rickettsia trachomatis | Chlamydia trachomatis | 32, 11 |
| Rickettsia tsutsugamushi | Rickettsia tsutsugamushi | 23, 7 |
| Rickettsia typhi | Rickettsia typhi | 30, 5 |
| Rickettsia typhi B9991CWPP | Rickettsia typhi | 30, 5 |
| Rickettsia typhi str. B9991CWPP | Rickettsia typhi | 30, 5 |
| Rickettsia typhi str. TH1527 | Rickettsia typhi | 30, 5 |
| Rickettsia typhi str. Wilmington | Rickettsia typhi | 30, 5 |
| Rickettsia typhi TH1527 | Rickettsia typhi | 30, 5 |
| Rickettsia typhi Wilmington | Rickettsia typhi | 30, 5 |
| Rickettsia weigli | Bartonella quintana | 41, 11 |
| Rickettsia wolhynica | Bartonella quintana | 41, 11 |
| Rickettsiaformis psittacosis | Chlamydophila psittaci | 21, 13 |
| rickettsialpox | Rickettsia akari | 31, 3 |
| Rickettsiella grylli | Rickettsiella grylli | 25, 4 |
| Riemerella anatipestifer | Riemerella anatipestifer | 45, 18 |
| Riemerella anatipestifer ATCC 11845 = DSM 15868 | Riemerella anatipestifer | 45, 18 |
| Riemerella anatipestifer CH3 | Riemerella anatipestifer | 45, 18 |
| Riemerella anatipestifer DSM 15868 | Riemerella anatipestifer | 45, 18 |
| Riemerella anatipestifer RA-CH-1 | Riemerella anatipestifer | 45, 18 |
| Riemerella anatipestifer RA-CH-2 | Riemerella anatipestifer | 45, 18 |
| Riemerella anatipestifer RA-GD | Riemerella anatipestifer | 45, 18 |
| Riemerella anatipestifer RA-YM | Riemerella anatipestifer | 45, 18 |
| Riesia pediculicola | Candidatus Riesia pediculicola | 19, 5 |
| Riftia pachyptila endosymbiont | endosymbiont of Riftia pachyptila | 36, 4 |
| Rimicaris exoculata | Rimicaris exoculata | 0, 2 |
| Ring-tailed lemur | Lemur catta | 1, 0 |
| Ringed seal | Pusa hispida | 0, 1 |
| Ringelnatter | Natrix natrix | 1, 2 |
| ringspot virus, African oil palm | African oil palm ringspot virus | 1, 0 |
| ringspot virus, beet | beet ringspot virus | 3, 0 |
| ringspot virus, papaya | papaya ringspot virus | 12, 0 |
| ringspot virus, tobacco | tobacco ringspot virus | 1, 0 |
| ringspot virus, tomato | tomato ringspot virus | 2, 0 |
| Rio Bravo virus | Rio Bravo virus | 1, 0 |
| Rio Grande shiner | Notropis jemezanus | 1, 0 |
| Riptortus clavatus | Riptortus clavatus | 0, 2 |
| Risso’s dolphin | Grampus griseus | 1, 0 |
| Rissos dolphin | Grampus griseus | 1, 0 |
| Ristella capillosa | Pseudoflavonifractor capillosus | 28, 2 |
| Ristella clostridiiformis | Enterocloster clostridioformis | 69, 11 |
| Ristella corrodens | Eikenella corrodens | 34, 5 |
| Ristella cylindroides | Faecalitalea cylindroides | 28, 1 |
| Ristella distasonis | Parabacteroides distasonis | 108, 29 |
| Ristella fragilis | Bacteroides fragilis | 160, 61 |
| Ristella incommunis | Bacteroides fragilis | 160, 61 |
| Ristella melaninogenica | Prevotella melaninogenica | 85, 25 |
| Ristella nodosa | Dichelobacter nodosus | 45, 8 |
| Ristella ochraceus | Capnocytophaga ochracea | 76, 39 |
| Ristella oralis | Prevotella oralis | 44, 6 |
| Ristella putredinis | Alistipes putredinis | 44, 11 |
| Ristella uncata | Bacteroides fragilis | 160, 61 |
| river buffalo | Bubalus bubalis | 26, 2 |
| Rivulus marmoratus | Kryptolebias marmoratus | 4, 0 |
| rivulus, mangrove | Kryptolebias marmoratus | 4, 0 |
| RNA similarity group I | Pseudomonas nov. sp. | 1, 0 |
| Robiginitalea biformata | Robiginitalea biformata | 96, 33 |
| Robiginitalea biformata HTCC2501 | Robiginitalea biformata | 96, 33 |
| Robinia pseudoacacia | Robinia pseudoacacia | 1, 0 |
| robusta coffee | Coffea canephora | 3, 0 |
| Roccus labrax | Dicentrarchus labrax | 61, 10 |
| Rochalimaea elizabethae | Bartonella elizabethae | 24, 3 |
| Rochalimaea henselae | Bartonella henselae | 41, 11 |
| Rochalimaea quintana | Bartonella quintana | 41, 11 |
| Rochalimaea vinsonii | Bartonella vinsonii | 20, 2 |
| Rochalimaea vinsonii Weiss and Dasch 1982 | Bartonella vinsonii | 20, 2 |
| Rocio virus | Ilheus virus | 1, 0 |
| rock crab | Cancer pagurus | 0, 1 |
| rock dassie | Procavia capensis | 1, 0 |
| rock dove | Columba livia | 1, 0 |
| rock hyrax | Procavia capensis | 1, 0 |
| rock pigeon | Columba livia | 1, 0 |
| rock stickleback | Xiphister mucosus | 1, 0 |
| rock worm | Arenicola marina | 3, 0 |
| rock-loving mouse | Mus saxicola | 0, 1 |
| rock-pool mosquito | Ochlerotatus atropalpus | 1, 0 |
| rockcod | Trematomus bernacchii | 6, 2 |
| rockcod, black | Notothenia coriiceps | 1, 2 |
| rockcod, emerald | Trematomus bernacchii | 6, 2 |
| rocket candytuft | Iberis amara | 1, 0 |
| rockfish, Korean | Sebastes schlegelii | 2, 0 |
| rockfish, Korean black | Sebastes schlegelii | 2, 0 |
| rockfish, Schlegel’s black | Sebastes schlegelii | 2, 0 |
| rocotillo | Capsicum chinense | 2, 3 |
| Rodent herpesvirus Peru | Rodent herpesvirus Peru | 1, 0 |
| rohu | Labeo rohita | 1, 1 |
| Romalea guttata | Romalea microptera | 0, 1 |
| Romalea guttata (Houttuyn, 1813) | Romalea microptera | 0, 1 |
| Romalea guttata (Stoll, 1813) | Romalea microptera | 0, 1 |
| Romalea microptera | Romalea microptera | 0, 1 |
| Romalea microptera (Beauvois, 1817) | Romalea microptera | 0, 1 |
| Romalea micropterum | Romalea microptera | 0, 1 |
| Romalea reticulatus | Romalea microptera | 0, 1 |
| roof rat | Rattus rattus | 2, 1 |
| root | Staphylococcus epidermidis | 215, 51 |
| root-knot nematode | Meloidogyne javanica | 0, 1 |
| rootstock stem lesion associated virus, grapevine | grapevine rootstock stem lesion associated virus | 1, 0 |
| Rorippa nasturtium-aquaticum | Nasturtium officinale | 1, 0 |
| Rosa x borboniana | Rosa x borboniana | 1, 0 |
| Rosa x borboniana N.H.F.Desp. | Rosa x borboniana | 1, 0 |
| rose gum | Eucalyptus grandis | 1, 0 |
| rose-bay | Nerium oleander | 1, 0 |
| Roseburia hominis | Roseburia hominis | 75, 18 |
| Roseburia hominis A2-183 | Roseburia hominis | 75, 18 |
| Roseburia intestinalis | Roseburia intestinalis | 78, 9 |
| Roseburia intestinalis CAG:13 | Roseburia intestinalis | 78, 9 |
| Roseburia intestinalis L1-82 | Roseburia intestinalis | 78, 9 |
| Roseburia intestinalis M50/1 | Roseburia intestinalis | 78, 9 |
| Roseburia intestinalis XB6B4 | Roseburia intestinalis | 78, 9 |
| Roseburia inulinivorans | Roseburia inulinivorans | 52, 3 |
| Roseburia inulinivorans CAG:15 | Roseburia inulinivorans | 52, 3 |
| Roseburia inulinivorans DSM 16841 | Roseburia inulinivorans | 52, 3 |
| Roseburia rectale | Eubacterium rectale | 85, 27 |
| Roseibium sp. TrichSKD4 | Roseibium sp. TrichSKD4 | 52, 8 |
| Roseiflexus castenholzii | Roseiflexus castenholzii | 112, 39 |
| Roseiflexus castenholzii DSM 13941 | Roseiflexus castenholzii | 112, 39 |
| Roseiflexus sp. RS-1 | Roseiflexus sp. RS-1 | 104, 24 |
| Roseobacter denitrificans | Roseobacter denitrificans | 69, 26 |
| Roseobacter denitrificans OCh 114 | Roseobacter denitrificans | 69, 26 |
| Roseobacter denitrificans Shiba 1991 | Roseobacter denitrificans | 69, 26 |
| Roseobacter gallaeciensis | Phaeobacter gallaeciensis | 60, 26 |
| Roseobacter litoralis | Roseobacter litoralis | 81, 39 |
| Roseobacter litoralis Och 149 | Roseobacter litoralis | 81, 39 |
| Roseobacter litoralis Shiba 1991 | Roseobacter litoralis | 81, 39 |
| Roseobacter sp. AzwK-3b | Roseobacter sp. AzwK-3b | 49, 14 |
| Roseobacter sp. CCS2 | Roseobacter sp. CCS2 | 47, 18 |
| Roseobacter sp. GAI101 | Roseobacter sp. GAI101 | 74, 20 |
| Roseobacter sp. ISM | Roseovarius nubinhibens | 63, 20 |
| Roseobacter sp. MED193 | Roseobacter sp. MED193 | 70, 23 |
| Roseobacter sp. SK209-2-6 | Roseobacter sp. SK209-2-6 | 55, 14 |
| Roseomonas cervicalis | Roseomonas cervicalis | 62, 20 |
| Roseomonas cervicalis ATCC 49957 | Roseomonas cervicalis | 62, 20 |
| Roseomonas fauriae | Azospirillum brasilense | 63, 15 |
| Roseovarius nubinhibens | Roseovarius nubinhibens | 63, 20 |
| Roseovarius nubinhibens ISM | Roseovarius nubinhibens | 63, 20 |
| Roseovarius sp. 217 | Roseovarius sp. 217 | 61, 15 |
| Roseovarius sp. HTCC2601 | Roseovarius sp. HTCC2601 | 63, 19 |
| Roseovarius sp. TM1035 | Roseovarius sp. TM1035 | 48, 15 |
| rosette virus, turnip | turnip rosette virus | 2, 0 |
| Ross River virus | Ross River virus | 5, 0 |
| Ross river virus (STRAIN NB5092) | Ross River virus | 5, 0 |
| Ross river virus (STRAIN T48) | Ross River virus | 5, 0 |
| Rossellomorea aquimaris | Bacillus aquimaris | 1, 0 |
| Rossellomorea vietnamensis | Bacillus vietnamensis | 1, 0 |
| rosy barb | Puntius conchonius | 1, 0 |
| rosy boa | Charina trivirgata | 1, 0 |
| rosy periwinkle | Catharanthus roseus | 1, 0 |
| rosyface shiner | Notropis rubellus | 1, 0 |
| Rothia aeria | Rothia aeria | 21, 3 |
| Rothia aeria F0184 | Rothia aeria | 21, 3 |
| Rothia aeria F0474 | Rothia aeria | 21, 3 |
| Rothia denticariosa | Rothia dentocariosa | 25, 5 |
| Rothia dentocariosa | Rothia dentocariosa | 25, 5 |
| Rothia dentocariosa ATCC 17931 | Rothia dentocariosa | 25, 5 |
| Rothia dentocariosa M567 | Rothia dentocariosa | 25, 5 |
| Rothia mucilaginosa | Rothia mucilaginosa | 35, 5 |
| Rothia mucilaginosa ATCC 25296 | Rothia mucilaginosa | 35, 5 |
| Rothia mucilaginosa DY-18 | Rothia mucilaginosa | 35, 5 |
| Rothia mucilaginosa M508 | Rothia mucilaginosa | 35, 5 |
| rotklee | Trifolium pratense | 6, 2 |
| Rotylenchulus reniformis | Rotylenchulus reniformis | 1, 0 |
| rough-toothed dolphin | Steno bredanensis | 0, 1 |
| roughskin sculpin | Trachidermus fasciatus | 0, 2 |
| roundworm | Caenorhabditis elegans | 369, 143 |
| roundworm, pig | Ascaris suum | 187, 19 |
| Rous avian sarcoma virus | Rous avian sarcoma virus | 1, 0 |
| Rous sarcoma virus | Rous avian sarcoma virus | 1, 0 |
| Rous sarcoma virus RSV | Rous avian sarcoma virus | 1, 0 |
| Rousettus bat coronavirus HKU9 | Rousettus bat coronavirus HKU9 | 6, 0 |
| Rousettus leschenaulti | Rousettus leschenaulti | 1, 1 |
| Rousettus leschenaultii | Rousettus leschenaulti | 1, 1 |
| Rousettus leschenaultii (Desmarest, 1830) | Rousettus leschenaulti | 1, 1 |
| Royal Farm virus | Royal Farm virus | 2, 0 |
| RTSV | rice tungro spherical virus | 1, 0 |
| rubber tree, Para | Hevea brasiliensis | 4, 0 |
| rubbertree | Hevea brasiliensis | 4, 0 |
| Rubella virus | Rubella virus | 2, 0 |
| Rubella virus strain BRD1 | Rubella virus | 2, 0 |
| Rubella virus strain BRDII | Rubella virus | 2, 0 |
| Rubella virus strain Cendehill | Rubella virus | 2, 0 |
| Rubella virus strain M33 | Rubella virus | 2, 0 |
| Rubella virus strain RN-UK86 | Rubella virus | 2, 0 |
| Rubella virus strain TO-336 vaccine | Rubella virus | 2, 0 |
| Rubella virus vaccine strain RA27/3 | Rubella virus | 2, 0 |
| Rubinisphaera brasiliensis | Rubinisphaera brasiliensis | 118, 44 |
| Rubrivivax benzoatilyticus | Rubrivivax benzoatilyticus | 47, 6 |
| Rubrivivax benzoatilyticus JA2 | Rubrivivax benzoatilyticus | 47, 6 |
| Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 | Rubrivivax benzoatilyticus | 47, 6 |
| Rubrivivax gelatinosus | Rubrivivax gelatinosus | 86, 50 |
| Rubrivivax gelatinosus IL144 | Rubrivivax gelatinosus | 86, 50 |
| Rubrivivax gelatinosus PM1 | Rubrivivax gelatinosus | 86, 50 |
| Rubrivivax gelatinosus S1 | Rubrivivax gelatinosus | 86, 50 |
| Rubrobacter xylanophilus | Rubrobacter xylanophilus | 96, 34 |
| Rubrobacter xylanophilus DSM 9941 | Rubrobacter xylanophilus | 96, 34 |
| Rubus chlorotic mottle virus | Rubus chlorotic mottle virus | 1, 0 |
| Rudbeckia flower distortion virus | Rudbeckia flower distortion virus | 1, 0 |
| ruddy quail-dove | Geotrygon montana | 0, 1 |
| Ruditapes decussatus | Venerupis decussatus | 0, 1 |
| Ruditapes philippinarum | Venerupis philippinarum | 2, 0 |
| Ruegeria conchae | Ruegeria sp. TW15 | 40, 10 |
| Ruegeria lacuscaerulensis | Ruegeria lacuscaerulensis | 41, 12 |
| Ruegeria pomeroyi | Ruegeria pomeroyi | 126, 80 |
| Ruegeria pomeroyi DSS-3 | Ruegeria pomeroyi | 126, 80 |
| Ruegeria sp. PR1b | Ruegeria sp. PR1b | 5, 1 |
| Ruegeria sp. R11 | Ruegeria sp. R11 | 52, 21 |
| Ruegeria sp. TM1040 | Silicibacter sp. TM1040 | 96, 52 |
| Ruegeria sp. TW15 | Ruegeria sp. TW15 | 40, 10 |
| ruffed lemur | Varecia variegata | 1, 0 |
| rufous elephant shrew | Elephantulus rufescens | 1, 0 |
| rumen organism LC | Megasphaera elsdenii | 51, 24 |
| Ruminiclostridium cellulolyticum | Clostridium cellulolyticum | 106, 38 |
| Ruminiclostridium papyrosolvens | Clostridium papyrosolvens | 62, 12 |
| Ruminiclostridium thermocellum | Clostridium thermocellum | 106, 23 |
| Ruminobacter ruminicola | Prevotella ruminicola | 83, 50 |
| Ruminobacter succinogenes | Fibrobacter succinogenes | 69, 37 |
| Ruminococcaceae bacterium D16 | Ruminococcaceae bacterium D16 | 42, 4 |
| Ruminococcus albus | Ruminococcus albus | 96, 30 |
| Ruminococcus albus 7 | Ruminococcus albus | 96, 30 |
| Ruminococcus albus 8 | Ruminococcus albus | 96, 30 |
| Ruminococcus albus SY3 | Ruminococcus albus | 96, 30 |
| Ruminococcus bromii | Ruminococcus bromii | 30, 1 |
| Ruminococcus bromii L2-63 | Ruminococcus bromii | 30, 1 |
| Ruminococcus champanellensis | Ruminococcus champanellensis | 16, 6 |
| Ruminococcus champanellensis 18P13 | Ruminococcus champanellensis | 16, 6 |
| Ruminococcus flavefaciens | Ruminococcus flavefaciens | 46, 7 |
| Ruminococcus flavefaciens 007c | Ruminococcus flavefaciens | 46, 7 |
| Ruminococcus flavefaciens FD-1 | Ruminococcus flavefaciens | 46, 7 |
| Ruminococcus gauvreauii | Ruminococcus gauvreauii | 2, 0 |
| Ruminococcus gnavus | Ruminococcus gnavus | 55, 9 |
| Ruminococcus gnavus ATCC 29149 | Ruminococcus gnavus | 55, 9 |
| Ruminococcus gnavus CAG:126 | Ruminococcus gnavus | 55, 9 |
| Ruminococcus gnavus CC55_001C | Ruminococcus gnavus | 55, 9 |
| Ruminococcus hansenii | Blautia hansenii | 40, 4 |
| Ruminococcus hydrogenotrophicus | Blautia hydrogenotrophica | 57, 13 |
| Ruminococcus lactaris | Ruminococcus lactaris | 43, 15 |
| Ruminococcus lactaris ATCC 29176 | Ruminococcus lactaris | 43, 15 |
| Ruminococcus lactaris CC59_002D | Ruminococcus lactaris | 43, 15 |
| Ruminococcus obeum | Ruminococcus obeum | 86, 23 |
| Ruminococcus obeum A2-162 | Ruminococcus obeum | 86, 23 |
| Ruminococcus obeum ATCC 29174 | Ruminococcus obeum | 86, 23 |
| Ruminococcus obeum CAG:39 | Ruminococcus obeum | 86, 23 |
| Ruminococcus sp. | Ruminococcus sp. | 1, 0 |
| Ruminococcus sp. 5_1_39BFAA | Ruminococcus sp. 5_1_39BFAA | 46, 8 |
| Ruminococcus sp. 5_1_39B_FAA | Ruminococcus sp. 5_1_39BFAA | 46, 8 |
| Ruminococcus sp. SR1/5 | Ruminococcus sp. SR1/5 | 34, 7 |
| Ruminococcus torques | Ruminococcus torques | 80, 15 |
| Ruminococcus torques ATCC 27756 | Ruminococcus torques | 80, 15 |
| Ruminococcus torques CAG:61 | Ruminococcus torques | 80, 15 |
| Ruminococcus torques L2-14 | Ruminococcus torques | 80, 15 |
| Runella slithyformis | Runella slithyformis | 171, 42 |
| Runella slithyformis DSM 19594 | Runella slithyformis | 171, 42 |
| Rupestris stem pitting associated virus, grapevine | grapevine Rupestris stem pitting associated virus | 1, 0 |
| Rupestris stem pitting-associated virus | Rupestris stem pitting-associated virus | 1, 0 |
| Rusa unicolor | Rusa unicolor | 1, 0 |
| Russell’s viper | Daboia russellii | 3, 0 |
| Russells viper | Daboia russellii | 3, 0 |
| Russian wheat aphid | Diuraphis noxia | 3, 0 |
| rust-red flour beetle | Tribolium castaneum | 336, 164 |
| Rutstroemia henningsiana | Poculum henningsianum | 1, 0 |
| Ruwenzori horseshoe bat | Rhinolophus ruwenzorii | 1, 0 |
| rye | Secale cereale | 0, 1 |
| ryegrass mosaic virus | ryegrass mosaic virus | 3, 0 |
| ryegrass mottle virus | ryegrass mottle virus | 1, 0 |
| ryegrass, Italian | Lolium multiflorum | 1, 0 |
| ryegrass, perennial | Lolium perenne | 7, 2 |
| rymovirus, brome streak mosaic | brome streak mosaic virus | 4, 0 |
| Ryukyu mouse | Mus caroli | 1, 1 |
