Citrobacter freundii

Taxonomy
Taxonomy database identifier: 546
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Enterobacteriales
Family Enterobacteriaceae
Genus Citrobacter
Species freundii
Peptidase View peptidase sequences from Citrobacter freundii
Count of known and putative peptidases: 55, non-peptidase homologues 9
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1374491
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1376007
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1374869
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1375961
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1375053
AC A8 A08.001 signal peptidase II MER1150881
AC A8 A08.001 signal peptidase II MER0419415 lspA
AC A8 unassigned family A8 unassigned peptidases MER0422125 lspA
AD A24 A24.003 type 4 prepilin peptidase 2 MER0332880 P834_0/P834_08734/P835_03989/TN42_25170 HMPREF9428_04049
AD A24 A24.A10 gspO g.p. (Escherichia coli) MER0690749 CFNIH1_04350
AD A24 unassigned subfamily A24A unassigned peptidases MER0628434 CFNIH1_03070
AD A24 unassigned subfamily A24A unassigned peptidases MER1157835
AD A24 unassigned subfamily A24A unassigned peptidases MER1157838
AD A24 unassigned subfamily A24A unassigned peptidases MER1157673
AE A31 A31.001 HybD peptidase MER0230675 HMPREF9428_04111
AE A31 A31.002 HyaD peptidase MER0232033 HMPREF9428_00069
AE A31 A31.003 HycI peptidase MER0427759
CA C10 unassigned family C10 unassigned peptidases MER1169433
CA C93 unassigned family C93 unassigned peptidases MER0394335
CF C15 C15.001 pyroglutamyl-peptidase I (prokaryote) MER0292407 pcp HMPREF9428_00488
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0462633
CL C82 C82.A02 ECBD_1659 protein (Escherichia coli) MER0462635 HMPREF9428_01929
CL C82 C82.A03 YnhG protein (Escherichia coli) MER0463960 HMPREF9428_01112
CL C82 C82.A05 YcfS protein (Escherichia coli) MER0463959 HMPREF9428_00890
CL C82 unassigned subfamily C82A unassigned peptidases MER0462634 HMPREF9428_00602
CO C40 C40.004 spr peptidase MER0452428
CO C40 C40.A01 NlpC protein (Escherichia coli) MER0401960 HMPREF9428_01075
CO C40 non-peptidase homologue family C40 non-peptidase homologues MER0718298 AF42/CFNIH1_10850/TN42_23310/TO64_21105
CO C40 non-peptidase homologue family C40 non-peptidase homologues MER0305469 HMPREF9428_01183
CO C40 unassigned family C40 unassigned peptidases MER1170563
CO C40 unassigned family C40 unassigned peptidases MER0723383 P834_05331
G- G5 unassigned family G5 unassigned peptidases MER0937491 TO64_25545
G- G5 unassigned family G5 unassigned peptidases MER0911686 tir
G- G5 unassigned family G5 unassigned peptidases MER0911233 P835_01985
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0346718
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0335922 pepN D186_04945
MA M3 M03.004 oligopeptidase A MER1186329
MA M3 M03.004 oligopeptidase A MER0335663
MA M3 M03.005 peptidyl-dipeptidase Dcp MER0818120 CFNIH1_17630
MA M3 M03.005 peptidyl-dipeptidase Dcp MER0817843 AF42_01523
MA M3 M03.005 peptidyl-dipeptidase Dcp MER0345552
MA M105 M105.UPW family M105 unassigned peptidases MER1369454
MA M105 M105.UPW family M105 unassigned peptidases MER1369730
MA M105 M105.UPW family M105 unassigned peptidases MER1373277
MA M105 M105.UPW family M105 unassigned peptidases MER1369451
MA M105 M105.UPW family M105 unassigned peptidases MER1369620
MA M105 M105.UPW family M105 unassigned peptidases MER1369449
MA M32 M32.003 TcMCP1 carboxypeptidase MER0264816 HMPREF9428_01249
MA M41 M41.001 FtsH peptidase MER0363551 hflB
MA M41 unassigned family M41 unassigned peptidases MER0372051
MA M48 M48.002 HtpX peptidase MER0287581 htpX HMPREF9428_01740
MA M48 M48.022 low osmolarity induced peptidase MER0883711 CFNIH1_01660/P834_08212/TO64/TO64_17625
MA M48 M48.022 low osmolarity induced peptidase MER0886404 AF42_03406
MA M48 M48.022 low osmolarity induced peptidase MER0883133 P835_03594/TN42_11700
MA M48 M48.A03 YcaL protein (Escherichia coli) MER0882937 AF42_00737
MA M48 M48.A03 YcaL protein (Escherichia coli) MER0885964 TN42_17030
MA M48 unassigned subfamily M48A unassigned peptidases MER0887013 AF42_00660
MA M48 unassigned subfamily M48B unassigned peptidases MER0301349
MA M90 M90.001 MtfA peptidase MER0228012 mtfA HMPREF9428_01925
MA M97 M97.001 EcxAB peptidase MER0494966 cfxA
MC M14 M14.034 murein peptide amidase MpaA MER0468912 HMPREF9428_01468
MD M15 unassigned subfamily M15D unassigned peptidases MER0923379 ddpX
MD M15 unassigned subfamily M15D unassigned peptidases MER0312519 HMPREF9428_01321
MD M74 M74.001 murein endopeptidase MER0312980 mepA HMPREF9428_02293
ME M16 M16.001 pitrilysin MER0668100
ME M16 M16.001 pitrilysin MER0629514
ME M16 M16.001 pitrilysin MER0314905 HMPREF9428_03222
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0471030
MF M17 M17.003 PepA aminopeptidase MER0266761 pepA D186_14299
MF M17 M17.004 PepB aminopeptidase MER0340445 pepB HMPREF9428_02453
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0318832 map HMPREF9428_02606
MG M24 M24.003 Xaa-Pro dipeptidase (bacteria-type) MER0482578
MG M24 M24.004 aminopeptidase P (bacteria) MER0557340
MG M24 M24.004 aminopeptidase P (bacteria) MER0319132 HMPREF9428_03155
MG M24 unassigned subfamily M24B unassigned peptidases MER0482579 HMPREF9428_00844
MH M20 M20.003 peptidase T MER0303182
MH M20 M20.007 Xaa-His dipeptidase MER0303488
MH M20 M20.010 DapE peptidase MER0474895
MH M20 M20.974 acetylornithine deacetylase ArgE MER0369714 argE HMPREF9428_04518
MH M20 M20.976 allantoate amidohydrolase MER0843010 AF42_00331/CFNIH1_12725/TN42_03460/TO
MH M20 unassigned subfamily M20A unassigned peptidases MER0473101
MH M20 unassigned subfamily M20B unassigned peptidases MER0370826 HMPREF9428_00087
MH M20 unassigned family M20D unassigned peptidases MER0846913 CFNIH1_18060
MH M20 unassigned family M20D unassigned peptidases MER0849737 CFNIH1_18565
MH M20 unassigned family M20D unassigned peptidases MER0372693 HMPREF9428_01374
MH M20 unassigned family M20 unassigned peptidases MER0847739 P835_01890
MH M28 M28.005 IAP aminopeptidase MER0197084 HMPREF9428_03269
MH M28 unassigned subfamily M28C unassigned peptidases MER1245920
MH M42 M42.008 YpdE-type putative peptidase MER0301119
MH M42 M42.A01 SgcX protein (Escherichia coli) MER0881147 TO64_01515
MH M42 unassigned family M42 unassigned peptidases MER0374022
MJ M38 M38.001 isoaspartyl dipeptidase (metallo-type) MER0296483 HMPREF9428_02403
MJ M38 M38.982 urease MER0873265 ureC
MJ M38 M38.982 urease MER0859553 ureC
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0860364 CFNIH1_00145/P834/P834_07867/TN42_04265
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0869714 CFNIH1_02905
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0867613 allB
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0874850 allB
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0864156 allB
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0866372 hutI
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0863613 hutI
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0874631 P835_03283
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0870368 hutI
MJ M38 unassigned family M38 unassigned peptidases MER0296544 HMPREF9428_04282
MM M50 M50.004 RseP peptidase MER0891875 AF42/CFNIH1_10560/P834_05273/TO64_25390
MO M23 M23.011 YebA peptidase MER0404026 HMPREF9428_01767
MO M23 M23.011 YebA peptidase MER0388536 HMPREF9428_04711
MO M23 M23.950 YibP g.p. (Escherichia sp.) MER0479240
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0034985
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0477970
MP M67 unassigned subfamily M67B unassigned peptidases MER0907408 TO64_05485
MP M67 unassigned subfamily M67B unassigned peptidases MER0906077 P834_07007
MU M103 M103.UNW family M103 non-peptidase homologues MER0111319 HMPREF9428_02984
NB N6 unassigned family N6 unassigned peptide lyases MER0913023 CFNIH1_10860
NB N6 unassigned family N6 unassigned peptide lyases MER0913016 flhB
ND N4 non-peptidase homologue family N4 non-lyase homologues MER0493340
ND N4 non-peptidase homologue family N4 non-lyase homologues MER0294752 HMPREF9428_04430
ND N4 non-peptidase homologue family N4 non-lyase homologues MER0294955 HMPREF9428_00958
PA S1 S01.260 B1598 peptidase MER0488763 HMPREF9428_01247
PA S1 S01.273 DegP peptidase MER0166151 HMPREF9428_02611
PA S1 unassigned subfamily S1C unassigned peptidases MER0960264 AB180_15605
PA S1 unassigned subfamily S1C unassigned peptidases MER1270166 degP
PA S1 unassigned subfamily S1C unassigned peptidases MER0327504 HMPREF9428_04333
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0454806
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0456863
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0460048
PB C69 C69.001 dipeptidase A MER0318500 HMPREF9428_03713
PB T1 T01.006 HslV component of HslUV peptidase MER0443146
PB T2 unassigned family T2 unassigned peptidases MER1094879 AB180_25740/P834_05946/P835_/P835_01275
PB T2 unassigned family T2 unassigned peptidases MER1094747 P835_03009
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0307085 HMPREF9428_03954
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0436578
PC C26 C26.957 GMP synthase MER0443002
PC C26 C26.960 TrpD protein (anthranilate synthase component II) MER0441722
PC C26 C26.961 PuuD protein MER0445559
PC C26 C26.964 CTP synthetase MER0447730
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0445062
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0452048 HMPREF9428_00991
PC C26 unassigned family C26 unassigned peptidases MER0436937 carA
PC C26 unassigned family C26 unassigned peptidases MER0448143 HMPREF9428_02355
PC C56 C56.A06 DDB_G0276405 (Dictyostelium discoideum) MER0402914 HMPREF9428_00084
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0730681 AF42_03736
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0730785 AF42_01637
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0732383 AF42_00229/CFNIH1_12235
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0891498 TO64_04830
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0730245 P834_05545
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0385955 HMPREF9428_01810
PC S51 S51.001 dipeptidase E MER0314003 pepE HMPREF9428_04380
PC S51 unassigned family S51 unassigned peptidases MER1356383
SC S9 S09.010 oligopeptidase B MER0490785
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER1001026 AF42_01190/P834_08133
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER1001686 P834_06197
SC S9 unassigned subfamily S9B unassigned peptidases MER0997475 AB180_20540/TO64_12850
SC S9 unassigned subfamily S9B unassigned peptidases MER0997134 TO64_03985
SC S9 unassigned subfamily S9B unassigned peptidases MER0997619 P834_09484
SC S9 unassigned subfamily S9B unassigned peptidases MER0999268 A/AB180_10095/CFNIH1_22060/P835_02845
SC S9 unassigned subfamily S9B unassigned peptidases MER0998069 P834_04896
SE S11 S11.002 murein-DD-endopeptidase MER0352402 HMPREF9428_02104
SE S11 S11.003 penicillin-binding protein 6 MER0351028 HMPREF9428_00626
SE S11 S11.008 penicillin-binding protein 5-type peptidase MER0397911 HMPREF9428_00428
SE S11 S11.009 penicillin-binding protein 6b-type peptidase MER0351591 HMPREF9428_01978
SE S11 unassigned family S11 unassigned peptidases MER0948890 DPCES_2496
SE S11 unassigned family S11 unassigned peptidases MER0948217 V415_01010
SE S11 unassigned family S11 unassigned peptidases MER0948524 blaSHV-12/TN42_26575
SE S11 unassigned family S11 unassigned peptidases MER0949494 TN42_20315
SE S11 unassigned family S11 unassigned peptidases MER0950083 blaPER-2
SE S11 unassigned family S11 unassigned peptidases MER0980121 blaCTX-M-65/HMPREF1986_02084
SE S11 unassigned family S11 unassigned peptidases MER0950002 blaTEM
SE S11 unassigned family S11 unassigned peptidases MER0949238 KOY_01570
SE S12 S12.006 class C beta-lactamase MER0075677 ampC
SE S12 S12.006 class C beta-lactamase MER0000467 ampC/blaCMY-2
SE S12 S12.006 class C beta-lactamase MER0037365
SE S12 S12.A28 pksF (Bacillus subtilis) MER0354061 HMPREF9428_03310
SE S12 non-peptidase homologue family S12 non-peptidase homologues MER1004709 blaCMY
SE S12 unassigned family S12 unassigned peptidases MER1008141 CFNIH1_08415
SE S12 unassigned family S12 unassigned peptidases MER1003396 ampC
SE S12 unassigned family S12 unassigned peptidases MER1004819 AB180_23380/P834_05491
SE S12 unassigned family S12 unassigned peptidases MER1008211 AF/CFNIH1_11940/P835_00796/TO64_28675
SE S12 unassigned family S12 unassigned peptidases MER0398238 bla
SE S12 unassigned family S12 unassigned peptidases MER0988723 blaMOX-2
SE S13 S13.001 D-Ala-D-Ala peptidase C MER0298419
SE S13 unassigned family S13 unassigned peptidases MER1313839
SF S24 S24.001 repressor LexA MER0472031
SF S24 S24.003 UmuD protein MER0414323
SF S24 S24.003 UmuD protein MER0028413 mucA
SF S24 S24.003 UmuD protein MER0375598 HMPREF9428_01425
SF S24 non-peptidase homologue family S24 non-peptidase homologues MER1041015 TN42_14445
SF S24 unassigned family S24 unassigned peptidases MER1040690 CFNIH1_11255
SF S24 unassigned family S24 unassigned peptidases MER1028846 CFNIH1_18345
SF S24 unassigned family S24 unassigned peptidases MER1028837 CFNIH1_18995
SF S24 unassigned family S24 unassigned peptidases MER1041292 CFNIH1_22500
SF S24 unassigned family S24 unassigned peptidases MER1042485 CFNIH1_25055/umuD
SF S24 unassigned family S24 unassigned peptidases MER1040731 AF42_05441
SF S24 unassigned family S24 unassigned peptidases MER1041446 AF42_01055
SF S24 unassigned family S24 unassigned peptidases MER1040270 AF42_01370
SF S24 unassigned family S24 unassigned peptidases MER1042567 TN42_26845
SF S24 unassigned family S24 unassigned peptidases MER1044480 TN42_26450
SF S24 unassigned family S24 unassigned peptidases MER1041552 TN42_26015
SF S24 unassigned family S24 unassigned peptidases MER1043685 TO64_24360
SF S24 unassigned family S24 unassigned peptidases MER1044659 AB180_00870
SF S24 unassigned family S24 unassigned peptidases MER1040879 TO64_05710
SF S24 unassigned family S24 unassigned peptidases MER1043260 TO64_05925
SF S24 unassigned family S24 unassigned peptidases MER1042579 TO64_02725
SF S24 unassigned family S24 unassigned peptidases MER1045099 AB180_10405
SF S24 unassigned family S24 unassigned peptidases MER1040813 TN42_08655
SF S24 unassigned family S24 unassigned peptidases MER1332443
SF S24 unassigned family S24 unassigned peptidases MER1041380 P835_02271
SF S24 unassigned family S24 unassigned peptidases MER1029903 AF42_02250/P834_09654
SF S24 unassigned family S24 unassigned peptidases MER1043847 P834_06265
SF S24 unassigned family S24 unassigned peptidases MER1044348 P834_07000
SF S26 S26.001 signal peptidase I MER0138596 HMPREF9428_02504
SF S26 S26.014 TraF peptidase MER0269252 HMPREF9428_02529
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1050292 CFNIH1_25450/TN42_19740
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1050933 AF42_01989
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1046237 AF42_05061/TO64_24805
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1047112 TN42_25755
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1040300 TN42_22595
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1047621 TO64_16215
SF S26 unassigned subfamily S26A unassigned peptidases MER1051116 AF42_01958
SF S26 unassigned subfamily S26C unassigned peptidases MER1053479 TO64_15920
SF S26 unassigned subfamily S26C unassigned peptidases MER1052030 CFNIH1_16295/TO64_16510
SH S78 unassigned family S78 unassigned peptidases MER1087440 CFNIH1_22385
SH S78 unassigned family S78 unassigned peptidases MER1086107 SK33_00444
SJ S16 S16.001 Lon-A peptidase MER0299628
SJ S16 unassigned family S16 unassigned peptidases MER1032405 CFNIH1_09660/P835_00451
SJ S16 unassigned family S16 unassigned peptidases MER1032483 AB180_03000/AF42/AF42_00776/P834_06047
SJ S16 unassigned family S16 unassigned peptidases MER1038515 AF42_04327
SJ S16 unassigned family S16 unassigned peptidases MER1030356 AB180_21435/P834_05093
SJ S16 unassigned family S16 unassigned peptidases MER1306752
SJ S16 unassigned family S16 unassigned peptidases MER1031633 P835_01419
SK S14 S14.001 peptidase Clp (type 1) MER0295250 clpP HMPREF9428_00210
SK S14 non-peptidase homologue family S14 non-peptidase homologues MER1017010 TO64_05825
SK S14 non-peptidase homologue family S14 non-peptidase homologues MER1012460 TN42_08755
SK S14 non-peptidase homologue family S14 non-peptidase homologues MER1015601 P835_02628/TO64_02830
SK S41 S41.001 C-terminal processing peptidase-1 MER0288384 HMPREF9428_01741
SK S41 unassigned subfamily S41A unassigned peptidases MER1339004 prc
SK S49 S49.003 protein C (bacteriophage lambda) MER0321164 HMPREF9428_03487
SK S49 unassigned subfamily S49A unassigned peptidases MER1338400
SK S49 unassigned subfamily S49B unassigned peptidases MER1069253 CFNIH1_20155/TO64_05425
SK S49 unassigned subfamily S49B unassigned peptidases MER1068018 AF42_05138
SK S49 unassigned subfamily S49B unassigned peptidases MER1069393 AB18/AB180_05485/AF42_01266/TO64_01060
SK S49 unassigned subfamily S49B unassigned peptidases MER1067735 TN42_23865
SK S49 unassigned subfamily S49B unassigned peptidases MER1070909 TO64_15325
SK S49 unassigned subfamily S49B unassigned peptidases MER1068975 CFNIH1_24775/TN42_20135/TO/TO64_26305
SK S49 unassigned subfamily S49B unassigned peptidases MER1068124 AC44_1627
SK S49 unassigned subfamily S49B unassigned peptidases MER1353945
SK S49 unassigned subfamily S49B unassigned peptidases MER1347432
SK S49 unassigned subfamily S49B unassigned peptidases MER1353249
SK S49 unassigned subfamily S49B unassigned peptidases MER1353692
SK S49 unassigned subfamily S49B unassigned peptidases MER1065751 CF/CFNIH1_18885/P834_06836/P835_02249
SK S49 unassigned subfamily S49B unassigned peptidases MER0321294 HMPREF9428_00941
SK S49 unassigned subfamily S49B unassigned peptidases MER0297468 HMPREF9428_01022
SS S66 S66.002 murein tetrapeptidase LD-carboxypeptidase (Escherichia-type) MER0320357 HMPREF9428_01620
SS S66 unassigned family S66 unassigned peptidases MER1087091 ldcA
ST S54 unassigned family S54 unassigned peptidases MER1077199 glpG
U- U32 unassigned family U32 unassigned peptidases MER0403386
U- U32 unassigned family U32 unassigned peptidases MER0404049

GENOME ANALYSIS: Comparison with 13 completely sequenced genomes from genus Citrobacter
Family Comment
A24 lineage specific expansion (6 homologues)
A39 lineage specific expansion (5 homologues)
C10 significant presence (1 homologues)
C40 lineage specific expansion (6 homologues)
C56 lineage specific expansion (7 homologues)
M3 lineage specific expansion (5 homologues)
M105 significant presence (6 homologues)
M16 lineage specific expansion (4 homologues)
M20 lineage specific expansion (11 homologues)
M38 lineage specific expansion (13 homologues)
M48 lineage specific expansion (8 homologues)
M67 significant presence (2 homologues)
M97 significant presence (1 homologues)
N4 significant presence (3 homologues)
S11 lineage specific expansion (12 homologues)
S12 lineage specific expansion (11 homologues)
S14 lineage specific expansion (4 homologues)
S16 lineage specific expansion (7 homologues)
S24 lineage specific expansion (28 homologues)
S26 lineage specific expansion (11 homologues)
S49 lineage specific expansion (16 homologues)
S78 significant presence (2 homologues)