Lactobacillus rhamnosus

Taxonomy
Taxonomy database identifier: 47715
Superkingdom Bacteria
Phylum Firmicutes
Class Bacilli
Order Lactobacillales
Family Lactobacillaceae
Genus Lactobacillus
Species rhamnosus
Peptidase View peptidase sequences from Lactobacillus rhamnosus
Count of known and putative peptidases: 90, non-peptidase homologues 24
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0312771 lspA HMPREF0539_1517
CA C1 C01.086 aminopeptidase C MER0138521 LRH_13711
CA C1 unassigned subfamily C1B unassigned peptidases MER1165593
CA C1 unassigned subfamily C1B unassigned peptidases MER1167127
CA C1 unassigned subfamily C1B unassigned peptidases MER1166428
CA C1 unassigned subfamily C1B unassigned peptidases MER0139409 LRH_13716
CA C39 C39.001 bacteriocin-processing peptidase MER0302105 HMPREF0541_01108
CF C15 C15.001 pyroglutamyl-peptidase I (prokaryote) MER0138337 pcp LRHM_0233
CF C15 C15.001 pyroglutamyl-peptidase I (prokaryote) MER0331781 pcp R0011_07642
CL C60 C60.006 sortase A (Streptococcus-type) MER0329529 srtA2 LC705_p00020
CL C60 C60.006 sortase A (Streptococcus-type) MER0331762 LRHK_2151
CL C60 unassigned subfamily C60A unassigned peptidases MER0331755 srtC1 LRHM_0425
CL C60 unassigned subfamily C60A unassigned peptidases MER0331764 srtC2 LRHM_2278
CL C82 C82.001 L,D-transpeptidase (Enterococcus-type) MER0139304 LRH_04909
CL C82 non-peptidase homologue subfamily C82A non-peptidase homologues MER0738372 HMPREF0539_/LaR308_11180/LOCK908_2607
CO C40 C40.007 YddH peptidase MER0331779 LRHK_2590
CO C40 C40.007 YddH peptidase MER0173077 LRH_04769
CO C40 non-peptidase homologue family C40 non-peptidase homologues MER0720994 AAULR_16269
CO C40 unassigned family C40 unassigned peptidases MER0141549 LRH_12224
CO C40 unassigned family C40 unassigned peptidases MER0376825 LC705_02014
CR C108 C108.001 Prp peptidase (Staphylococcus aureus) MER0130819
G- G5 unassigned family G5 unassigned peptidases MER0935823 AAULR_18116/LaR308_04060/LRHMDP2_690
G- G5 unassigned family G5 unassigned peptidases MER0910834 HMPREF0539_2054/LGG_0/LOCK908_2462
G- G5 unassigned family G5 unassigned peptidases MER0940126 LRHMDP2_1935
G- G5 unassigned family G5 unassigned peptidases MER0910567 LRHMDP2_2150
G- G5 unassigned family G5 unassigned peptidases MER0486269
G- G5 unassigned family G5 unassigned peptidases MER0504565
G- G5 unassigned family G5 unassigned peptidases MER0504569
G- G5 unassigned family G5 unassigned peptidases MER0504570
G- G5 unassigned family G5 unassigned peptidases MER0504315
G- G5 unassigned family G5 unassigned peptidases MER0504336
MA M1 M01.002 lysyl aminopeptidase (bacteria) MER0334535 AAULR_03859
MA M1 M01.002 lysyl aminopeptidase (bacteria) MER0164144 LRH_02602
MA M1 M01.002 lysyl aminopeptidase (bacteria) MER1182678
MA M3 M03.007 oligopeptidase F MER0107431 LRH_12644
MA M3 M03.007 oligopeptidase F MER1189346
MA M3 M03.A08 BSSC8_09230 g.p. (Bacillus subtilis) MER0142197 pepF LRH_05539
MA M3 unassigned subfamily M3B unassigned peptidases MER1191252
MA M3 unassigned family M3 unassigned peptidases MER1191174
MA M3 unassigned family M3 unassigned peptidases MER0101329 pepF/Zan LRH_00087
MA M10 M10.001 matrix metallopeptidase-1 MER0188032 LC705_01942
MA M13 non-peptidase homologue family M13 non-peptidase homologues MER0468526 AAULR_11755
MA M13 unassigned family M13 unassigned peptidases MER0137472 LRH_04328
MA M13 unassigned family M13 unassigned peptidases MER0179822 pepO LRH_03583
MA M41 M41.009 FtsH-2 peptidase MER0136827 ftsH LRH_04859
MA M41 M41.009 FtsH-2 peptidase MER0362559 AAULR_20537
MA M78 unassigned family M78 unassigned peptidases MER0909786 AAULR_24041
MA M78 unassigned family M78 unassigned peptidases MER0910441 LRHMDP2_1654
MA M78 unassigned family M78 unassigned peptidases MER0504343
ME M16 M16.A20 ymfH g.p. (Bacillus subtilis) MER0173137 HMPREF0541_02804
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0396579 AAULR_08211
MG M24 M24.004 aminopeptidase P (bacteria) MER0482916 AAULR_25886
MG M24 M24.006 bacillus Xaa-Pro aminopeptidase MER0482915 AAULR_05868
MG M24 M24.006 bacillus Xaa-Pro aminopeptidase MER0170814 pepQ LRH_00387
MG M24 unassigned subfamily M24A unassigned peptidases MER0171095 map R0011_01000
MG M24 unassigned subfamily M24B unassigned peptidases MER0331760 HMPREF0541_01491
MG M24 unassigned subfamily M24B unassigned peptidases MER0331754 ypdF R0011_08153
MH M20 non-peptidase homologue subfamily M20D non-peptidase homologues MER0474618 abgB LRHM_0460
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0473205 AAULR_08870
MH M20 unassigned subfamily M20A unassigned peptidases MER1218724
MH M20 unassigned subfamily M20A unassigned peptidases MER0504320
MH M20 unassigned subfamily M20A unassigned peptidases MER0504337
MH M20 unassigned subfamily M20B unassigned peptidases MER0143203 pepT LRH_01032
MH M20 unassigned family M20D unassigned peptidases MER0170919 amaA LRH_10240
MH M20 unassigned family M20D unassigned peptidases MER0172899 hipO LRH_08108
MH M20 unassigned family M20D unassigned peptidases MER0408429
MH M20 unassigned family M20 unassigned peptidases MER0472443 dapE LGG_01846
MH M20 unassigned family M20 unassigned peptidases MER0370328 dapE HMPREF0541_02813
MH M20 unassigned family M20 unassigned peptidases MER0805722 LRHMDP2_148
MH M20 unassigned family M20 unassigned peptidases MER0504340
MH M42 unassigned family M42 unassigned peptidases MER0233463 ypdE LRHM_0343
MH M42 unassigned family M42 unassigned peptidases MER0236824 ysdC LRHK_2599
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0504324
MJ M38 unassigned family M38 unassigned peptidases MER0504317
MJ M38 unassigned family M38 unassigned peptidases MER0504329
MM M50 unassigned subfamily M50A unassigned peptidases MER0504326
MN M55 unassigned family M55 unassigned peptidases MER0238576 dppA HMPREF0539_0818
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0479718 LRHM_1664
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0173076 LRH_04769
MO M23 unassigned subfamily M23B unassigned peptidases MER0480004 AAULR_26406
MQ M29 M29.004 PepS aminopeptidase MER0141073 LRH_04403
MQ M29 M29.004 PepS aminopeptidase MER1258030
MQ M29 M29.004 PepS aminopeptidase MER1258250
MQ M29 unassigned family M29 unassigned peptidases MER1257920
MQ M29 unassigned family M29 unassigned peptidases MER1257900
MQ M29 unassigned family M29 unassigned peptidases MER1257273
PA S1 unassigned subfamily S1E unassigned peptidases MER0408460
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0454355 purF R0011_04240
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0457543 gltB LRHM_2429
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0455758 glmS LRHM_0940
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0504332
PB C44 unassigned family C44 unassigned peptidases MER0455275 glmS R0011_00670
PB C44 unassigned family C44 unassigned peptidases MER0458552 asnB LRHK_2627
PB C59 unassigned family C59 unassigned peptidases MER0144102 LRHM_0484
PB C69 C69.001 dipeptidase A MER0142293 pepD LC705_00035
PB C69 C69.001 dipeptidase A MER0279342 R0011_11723
PB C69 C69.001 dipeptidase A MER0171156 HMPREF0541_02851
PB C69 unassigned family C69 unassigned peptidases MER0386787 AAULR_15989
PB T1 unassigned subfamily T1B unassigned peptidases MER0237871 hslV LRHM_1359
PB T2 T02.007 Chryseobacterium meningosepticum-type N4-(beta-N-acetylglucosaminyl)-L-asparaginase MER0306956 asnA LC705_02741
PC C26 C26.957 GMP synthase MER0043165 guaA R0011_11703
PC C26 C26.961 PuuD protein MER0446191 radC LRHM_1198
PC C26 C26.964 CTP synthetase MER0450197 pyrG LRHM_2444
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0446887 hisH LRHM_1384
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0441265 carA LRHK_1458
PC C26 unassigned family C26 unassigned peptidases MER0331763 LRHK_2219
PC C26 unassigned family C26 unassigned peptidases MER0448818 guaA LRHM_2777
PC C26 unassigned family C26 unassigned peptidases MER0331757 puuD R0011_08963
PC C56 C56.001 PfpI peptidase MER0139410 pfpI LRHM_0014
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0385858 AAULR_24951
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0504571
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0170627
SB S8 S08.153 prtR peptidase (Lactobacillus rhamnosus) MER0028258 prtR LRH_04228
SB S8 unassigned subfamily S8A unassigned peptidases MER0331778 LRHK_2575
SB S8 unassigned subfamily S8A unassigned peptidases MER0191982 LRH_08518
SC S9 S09.071 trilobed protease MER0144416 HMPREF0539_1916
SC S9 S09.071 trilobed protease MER0329140 AAULR_15123
SC S9 S09.B04 BSU23640 g.p. (Bacillus subtilis) MER0504341
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0504342
SC S9 unassigned subfamily S9B unassigned peptidases MER0504331
SC S9 unassigned subfamily S9C unassigned peptidases MER1302032
SC S9 unassigned subfamily S9C unassigned peptidases MER1302764
SC S9 unassigned family S9 unassigned peptidases MER0504319
SC S9 unassigned family S9 unassigned peptidases MER0504330
SC S15 unassigned family S15 unassigned peptidases MER1323843
SC S15 unassigned family S15 unassigned peptidases MER1323013
SC S15 unassigned family S15 unassigned peptidases MER0006311 pepX
SC S33 S33.004 prolyl dipeptidase (Lactobacillus-type) MER0017144 pepR
SC S33 S33.004 prolyl dipeptidase (Lactobacillus-type) MER0331759 pepR LRHM_0714
SC S33 unassigned family S33 unassigned peptidases MER0213641 LRHM_2043
SC S33 unassigned family S33 unassigned peptidases MER0381271 HMPREF0541_02918
SC S33 unassigned family S33 unassigned peptidases MER0136828 R0011_05002
SC S33 unassigned family S33 unassigned peptidases MER0331780 LRHK_2602
SC S33 unassigned family S33 unassigned peptidases MER0331766 LRHM_2708
SE S11 S11.006 D,D-carboxypeptidase PBP3 (Streptococcus-type) MER0144645 LRH_12479
SE S11 unassigned family S11 unassigned peptidases MER0351656 AAULR_01880
SE S11 unassigned family S11 unassigned peptidases MER1305912
SE S11 unassigned family S11 unassigned peptidases MER0504339
SE S12 S12.950 esterase EstB MER0420362 HMPREF0541_01903
SE S12 S12.A21 pbpX g.p. (Bacillus subtilis) MER0331761 R0011_12575
SE S12 S12.A21 pbpX g.p. (Bacillus subtilis) MER0140091 LRH_01223
SE S12 S12.A21 pbpX g.p. (Bacillus subtilis) MER0421107 R0011_04455
SE S12 non-peptidase homologue family S12 non-peptidase homologues MER0331758 LRHM_0640
SE S12 non-peptidase homologue family S12 non-peptidase homologues MER1008432 AAULR_15058
SE S12 non-peptidase homologue family S12 non-peptidase homologues MER0164096 HMPREF0541_02214
SE S12 unassigned family S12 unassigned peptidases MER0355361 R0011_08948
SE S12 unassigned family S12 unassigned peptidases MER0420467 ampC LRHM_1114
SE S12 unassigned family S12 unassigned peptidases MER0421317 HMPREF0541_00070
SE S12 unassigned family S12 unassigned peptidases MER0331756 LRHK_536
SE S12 unassigned family S12 unassigned peptidases MER0331765 LRHK_2878
SE S12 unassigned family S12 unassigned peptidases MER0144417 pbpX LRH_01233
SE S12 unassigned family S12 unassigned peptidases MER0329130
SF S24 S24.001 repressor LexA MER0172767 lexA LC705_00710
SF S24 unassigned family S24 unassigned peptidases MER1042632 LaR308_12050
SF S24 unassigned family S24 unassigned peptidases MER1044722 HMPREF0539_0890
SF S24 unassigned family S24 unassigned peptidases MER1331396
SF S26 unassigned subfamily S26A unassigned peptidases MER0246690 R0011_07897
SH S78 unassigned family S78 unassigned peptidases MER1085982 LOCK908_1092
SH S78 unassigned family S78 unassigned peptidases MER1087755 LOCK908_0884
SH S78 unassigned family S78 unassigned peptidases MER1087563 ACS99_07400
SH S78 unassigned family S78 unassigned peptidases MER1086140 HMPREF0539_0419
SH S78 unassigned family S78 unassigned peptidases MER1084440 HMPREF0539_0925
SH S78 unassigned family S78 unassigned peptidases MER1087718 LRHM_2792
SH S78 unassigned family S78 unassigned peptidases MER1087686 LRHMDP2_1509
SJ S16 S16.012 SepM peptidase (Streptococcus mutans) MER0473356 lon LRHK_1326
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0504335
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0361682 LRH_08258
SK S14 S14.001 peptidase Clp (type 1) MER0144353 clpP LRH_05279
SK S14 non-peptidase homologue family S14 non-peptidase homologues MER1018935 LaR308_11865
SK S41 S41.007 ctpB peptidase MER0138249 ctpA LRH_03973
SK S49 non-peptidase homologue subfamily S49B non-peptidase homologues MER1071327 LaR308_11865
SS S66 unassigned family S66 unassigned peptidases MER0504316
ST S54 non-peptidase homologue family S54 non-peptidase homologues MER1076450 AAULR_02744
ST S54 non-peptidase homologue family S54 non-peptidase homologues MER1082935 AAULR_24631
ST S54 unassigned family S54 unassigned peptidases MER1081389 ACS99_12010/HMPREF0539_2811/LOCK908_0510
ST S54 unassigned family S54 unassigned peptidases MER1075896 ACS99_13160/HMPREF0539_2655/LOCK908_0/LOCK908_0359
ST S54 unassigned family S54 unassigned peptidases MER0504318
ST S54 unassigned family S54 unassigned peptidases MER0504328

GENOME ANALYSIS: Comparison with 64 completely sequenced genomes from genus Lactobacillus
Family Comment
M29 significant presence (6 homologues)
M55 significant presence (1 homologues)
S41 significant presence (1 homologues)
T2 significant presence (1 homologues)