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Citrobacter rodentium

Taxonomy
Taxonomy database identifier: 67825
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Enterobacteriales
Family Enterobacteriaceae
Genus Citrobacter
Species rodentium
Peptidase View peptidase sequences from Citrobacter rodentium
Count of known and putative peptidases: 128, non-peptidase homologues 55
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1376241
AC A8 A08.001 signal peptidase II MER0196091 lspA ROD_00241
AD A24 A24.A10 gspO g.p. (Escherichia coli) MER0196251 gspO ROD_44871
AD A24 unassigned subfamily A24A unassigned peptidases MER0196241 tadV ROD_41521
AD A24 unassigned subfamily A24A unassigned peptidases MER0031169 cfcP ROD_46561
AE A31 A31.001 HybD peptidase MER0196225 hybD ROD_35411
AE A31 A31.003 HycI peptidase MER0196211 hycI ROD_30941
AF A26 A26.002 OmpP peptidase MER0195582 ompT ROD_20151
C- C118 C118.UPW family C118 homologues, unassigned MER0750548
CA C39 C39.005 colicin V processing peptidase MER0196104 mchF ROD_03701
CA C39 C39.005 colicin V processing peptidase MER0196239 ROD_41051
CA C39 non-peptidase homologue family C39 non-peptidase homologues MER0196223 ROD_35071
CA C51 C51.A01 fused glutathionylspermidine amidase/glutathionylspermidine synthetase (Escherichia coli) MER0196224 gsp ROD_35371
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0196100 ROD_02251
CL C82 C82.A02 ECBD_1659 protein (Escherichia coli) MER0196169 erfK ROD_21001
CL C82 C82.A03 YnhG protein (Escherichia coli) MER0196142 ROD_13721
CL C82 C82.A04 YbiS protein (Escherichia coli) MER0196123 ROD_08211
CL C82 C82.A05 YcfS protein (Escherichia coli) MER0196134 ROD_11801
CO C40 C40.004 spr peptidase MER0196177 spr ROD_23061
CO C40 C40.A01 NlpC protein (Escherichia coli) MER0196141 nlpC ROD_13471
CO C40 unassigned family C40 unassigned peptidases MER0196101 yafL ROD_02261
CO C40 unassigned family C40 unassigned peptidases MER0196144 ROD_14151
G- G5 unassigned family G5 unassigned peptidases MER0195188 ROD_p1041
I- I104 I104.UPW family I104 unassigned peptidase inhibitors MER1384658
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0196129 pepN ROD_10011
MA M3 M03.004 oligopeptidase A MER0196244 prlC ROD_43011
MA M3 M03.005 peptidyl-dipeptidase Dcp MER0196146 dcp ROD_14891
MA M4 M04.023 zpx peptidase MER0196184 prt1 ROD_24511
MA M41 M41.001 FtsH peptidase MER0196260 ftsH ROD_46431
MA M48 M48.002 HtpX peptidase MER0196160 htpX ROD_18691
MA M48 M48.022 low osmolarity induced peptidase MER0196271 ROD_50501
MA M48 M48.023 BepA (Escherichia coli) MER0196182 ROD_24351
MA M48 unassigned family M48 unassigned peptidases MER0196124 ROD_08251
MA M85 M85.001 NleC peptidase (Escherichia coli) MER0195404 nleC
MA M90 M90.001 MtfA peptidase MER0217879 mtfA ROD_20631
MA M91 M91.001 NleD peptidase (Escherichia coli-type) MER0128190 nleD
MC M14 M14.034 murein peptide amidase MpaA MER0196154 ROD_16761
MD M74 M74.001 murein endopeptidase MER0196201 mepA ROD_27401
ME M16 M16.001 pitrilysin MER0196204 ptrA ROD_28631
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0196243 ROD_42801
MF M17 M17.003 PepA aminopeptidase MER0196219 pepA ROD_33261
MF M17 M17.004 PepB aminopeptidase MER0196186 pepB ROD_24671
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0196096 map ROD_01711
MG M24 M24.003 Xaa-Pro dipeptidase (bacteria-type) MER0196234 pepQ ROD_39081
MG M24 M24.004 aminopeptidase P (bacteria) MER0196269 pepP ROD_49251
MH M20 M20.003 peptidase T MER0196135 pepT ROD_12151
MH M20 M20.007 Xaa-His dipeptidase MER0196102 pepD ROD_03321
MH M20 M20.010 DapE peptidase MER0196179 dapE ROD_24201
MH M20 M20.974 acetylornithine deacetylase ArgE MER0196231 argE ROD_37881
MH M20 M20.A08 YgeY protein (Escherichia coli) MER0196222 ROD_34011
MH M20 unassigned subfamily M20A unassigned peptidases MER0196114 ROD_06071
MH M20 unassigned family M20D unassigned peptidases MER0196208 ROD_30391
MH M28 M28.005 IAP aminopeptidase MER0196209 iap ROD_30561
MH M42 M42.008 YpdE-type putative peptidase MER0196202 ypdE ROD_28021
MJ M38 M38.001 isoaspartyl dipeptidase (metallo-type) MER0196181 iadA ROD_24301
MJ M38 M38.982 urease MER0196227 ureC ROD_36121
MJ M38 M38.A02 PyrC protein (Escherichia coli) MER0196132 pyrC ROD_11221
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0196118 nagA ROD_06791
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0196121 hutI ROD_07691
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0196220 ssnA ROD_33951
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0196221 ROD_34001
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0196245 ROD_43101
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0196266 ROD_48401
MJ M38 unassigned family M38 unassigned peptidases MER0196168 ROD_20981
MM M50 M50.004 RseP peptidase MER0196097 ecfE ROD_01791
MO M23 M23.011 YebA peptidase MER0196164 ROD_18971
MO M23 M23.950 YibP g.p. (Escherichia sp.) MER0479253 ROD_42031
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0196210 nlpD ROD_30671
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0196270 ROD_49451
MO M23 unassigned subfamily M23B unassigned peptidases MER0034987 cfcV ROD_46571
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0196253 tldD ROD_45711
MU M103 M103.950 microcin-processing peptidase 1 homologue MER0196217 pmbA ROD_32961
NB N6 N06.003 EscU protein (Escherichia coli) MER0181667 escU ROD_30081
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0405632 lfhB ROD_02281
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0405285 flhB ROD_19251
ND N4 N04.002 EspP gamma protein autotransporter domain (Escherichi-type) MER0294701
ND N4 N04.002 EspP gamma protein autotransporter domain (Escherichi-type) MER0294691
ND N4 non-peptidase homologue family N4 non-lyase homologues MER0294839 ROD_11971
ND N4 unassigned family N4 unassigned peptide lyases MER0294708
PA S1 S01.260 B1598 peptidase MER0196145 ROD_14671
PA S1 S01.274 DegQ peptidase MER0196255 degQ ROD_45891
PA S1 S01.275 DegS peptidase MER0196254 degS ROD_45881
PA S1 unassigned subfamily S1C unassigned peptidases MER0196095 htrA ROD_01651
PA S6 S06.005 Pic peptidase MER0195192 ROD_p1411
PA S6 S06.010 EspC peptidase MER0195191 ROD_p1251
PA S6 unassigned family S6 unassigned peptidases MER0196240 adcA ROD_41301
PA S6 unassigned family S6 unassigned peptidases MER1266091
PA S6 unassigned family S6 unassigned peptidases MER1280580
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0196200 purF ROD_27231
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0196257 gltB ROD_46051
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0196117 asnB ROD_06761
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0196237 glmS ROD_40111
PB C44 unassigned family C44 unassigned peptidases MER0196099 ROD_02241
PB T1 T01.006 HslV component of HslUV peptidase MER0196232 hslV ROD_38141
PB T2 unassigned family T2 unassigned peptidases MER0196125 iaaA ROD_08331
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0196246 ggt ROD_43811
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0196249 pabA ROD_44491
PC C26 C26.957 GMP synthase MER0196183 guaA ROD_24481
PC C26 C26.960 TrpD protein (anthranilate synthase component II) MER0196157 trpD ROD_17401
PC C26 C26.961 PuuD protein MER0196103 puuD ROD_03571
PC C26 C26.964 CTP synthetase MER0196207 pyrG ROD_30341
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0196173 hisH ROD_21611
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0196138 ROD_12641
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0196170 cobQ ROD_21041
PC C26 unassigned family C26 unassigned peptidases MER0196092 carA ROD_00351
PC C56 C56.001 PfpI peptidase MER0196263 ROD_46791
PC C56 C56.972 phosphoribosylformylglycinamidine synthase MER0196187 purL ROD_25001
PC C56 C56.975 ES1 protein homolog, mitochondrial MER0196258 elbB ROD_46111
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0196105 ROD_04011
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0196109 thiJ ROD_04731
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0196166 ROD_19541
PC S51 S51.001 dipeptidase E MER0196230 pepE ROD_37351
PC S51 unassigned family S51 unassigned peptidases MER1356370
SC S9 S09.010 oligopeptidase B MER0196163 ptrB ROD_18841
SC S9 S09.A39 YeiG protein (Escherichi coli) MER0196176 ROD_22821
SC S9 S09.A40 YqiA protein (Escherichi coli) MER0196226 ROD_35781
SC S9 S09.A43 YpfH protein (Escherichi coli) MER0196180 ROD_24221
SC S9 S09.A46 YjfP protein (Escherichi coli) MER0196214 ROD_32441
SC S9 S09.A47 aes protein (acetyl esterase) (Escherichi coli) MER0196112 aes ROD_05341
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0196113 fes ROD_05951
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0196133 ROD_11701
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0196147 ROD_15771
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0196235 ROD_39241
SC S9 unassigned family S9 unassigned peptidases MER0196143 ROD_14001
SC S9 unassigned family S9 unassigned peptidases MER0196149 ROD_16101
SC S9 unassigned family S9 unassigned peptidases MER0196233 ROD_38711
SC S33 S33.A46 YheT protein (Escherichia coli) MER0196250 ROD_44561
SC S33 S33.A54 YnbC protein (Escherichia coli) MER0196151 ROD_16321
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0196213 ROD_31441
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0196236 pldB ROD_39291
SC S33 unassigned family S33 unassigned peptidases MER0196115 ROD_06251
SC S33 unassigned family S33 unassigned peptidases MER0196119 ROD_06941
SC S33 unassigned family S33 unassigned peptidases MER0196153 rutD ROD_16641
SC S33 unassigned family S33 unassigned peptidases MER0196199 menH ROD_26701
SC S33 unassigned family S33 unassigned peptidases MER0196248 bioH ROD_44111
SE S11 S11.002 murein-DD-endopeptidase MER0196175 pbpG ROD_22571
SE S11 S11.008 penicillin-binding protein 5-type peptidase MER0196116 dacA ROD_06501
SE S11 S11.A01 penP g.p. (Bacillus subtilis) MER0196136 ROD_12321
SE S11 unassigned family S11 unassigned peptidases MER0196126 dacC ROD_08451
SE S11 unassigned family S11 unassigned peptidases MER0196172 dacD ROD_21491
SE S12 S12.012 AmpH protein (Escherichia-type) MER0196106 ampH ROD_04171
SE S13 S13.001 D-Ala-D-Ala peptidase C MER0196259 dacB ROD_46391
SF S24 S24.001 repressor LexA MER0196229 lexA ROD_37031
SF S24 S24.003 UmuD protein MER0196137 umuD ROD_12361
SF S24 S24.003 UmuD protein MER0196238 ROD_41011
SF S24 unassigned family S24 unassigned peptidases MER0196198 cI ROD_26211
SF S26 S26.001 signal peptidase I MER0196188 lepB ROD_25141
SH S73 S73.001 gpO peptidase (Enterobacteria phage P2) MER0322631 O ROD_36761
SJ S16 S16.001 Lon-A peptidase MER0196111 lon ROD_04941
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0196268 radA ROD_49121
SJ S16 S16.A10 ycbZ (Escherichia coli) MER0196130 ROD_10161
SJ S16 unassigned family S16 unassigned peptidases MER1323947
SK S14 S14.001 peptidase Clp (type 1) MER0196110 clpP ROD_04921
SK S41 S41.001 C-terminal processing peptidase-1 MER0196161 prc ROD_18701
SK S41 S41.001 C-terminal processing peptidase-1 MER0196162 prc ROD_18701
SK S49 S49.001 signal peptide peptidase A (Pseudomonas aeruginosa) MER0196139 sppA ROD_12921
SK S49 unassigned subfamily S49B unassigned peptidases MER0196155 sohB ROD_17321
SK S49 unassigned subfamily S49B unassigned peptidases MER0196197 ROD_25981
SS S66 S66.002 murein tetrapeptidase LD-carboxypeptidase (Escherichia-type) MER0196158 ldcA ROD_18261
ST S54 S54.016 GlpG peptidase (Escherichia-type) MER0196247 glpG ROD_44001
U- U32 U32.002 collagenase (Helicobacter-type) MER0196174 ROD_22131
U- U32 U32.003 collagenase (Salmonella-type) MER0196148 ROD_15981
U- U32 U32.A01 YhbV protein (Escherichia coli) MER0196261 ROD_46731
U- U32 unassigned family U32 unassigned peptidases MER0196262 ROD_46741
U- U69 unassigned family U69 unassigned peptidases MER0232454 ROD_00511
U- U69 unassigned family U69 unassigned peptidases MER0196152 ROD_16391
U- U69 unassigned family U69 unassigned peptidases MER0195572 ROD_02111
U- U69 unassigned family U69 unassigned peptidases MER0195481 ROD_03891
U- U69 unassigned family U69 unassigned peptidases MER0195585 ROD_03921
U- U69 unassigned family U69 unassigned peptidases MER0195454 ROD_15731
U- U69 unassigned family U69 unassigned peptidases MER0195600 ROD_38761

GENOME ANALYSIS: Comparison with 13 completely sequenced genomes from genus Citrobacter
Family Comment
A26 significant presence (1 homologues)
A31 significant decrease in homologues (2 homologues)
C118 significant presence (1 homologues)
C39 significant presence (3 homologues)
C51 significant presence (1 homologues)
I104 significant presence (1 homologues)
M4 significant presence (1 homologues)
M24 significant decrease in homologues (3 homologues)
M85 significant presence (1 homologues)
M91 significant presence (1 homologues)
N4 significant presence (4 homologues)
S6 significant presence (5 homologues)
S9 lineage specific expansion (13 homologues)
S73 significant presence (1 homologues)
U69 lineage specific expansion (7 homologues)

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