Lactobacillus ruminis

Taxonomy
Taxonomy database identifier: 1623
Superkingdom Bacteria
Phylum Firmicutes
Class Bacilli
Order Lactobacillales
Family Lactobacillaceae
Genus Lactobacillus
Species ruminis
Peptidase View peptidase sequences from Lactobacillus ruminis
Count of known and putative peptidases: 63, non-peptidase homologues 23
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0232095 lspA LRC_09200
AD A24 unassigned subfamily A24A unassigned peptidases MER0333106 BN628_01693/pilD LRU_02272
CA C1 C01.086 aminopeptidase C MER0238149 LRC_03930
CA C1 unassigned subfamily C1B unassigned peptidases MER1165335
CA C1 unassigned subfamily C1B unassigned peptidases MER1165412
CA C1 unassigned subfamily C1B unassigned peptidases MER0274563 pepC2 HMPREF0542_11870
CA C39 C39.001 bacteriocin-processing peptidase MER0274531 LRC_17080
CA C39 unassigned family C39 unassigned peptidases MER0236826 comA2
CF C15 C15.001 pyroglutamyl-peptidase I (prokaryote) MER0219041 pcp HMPREF0542_11798
CL C60 C60.003 sortase C2 MER0190107 HMPREF0542_11663
CL C60 C60.006 sortase A (Streptococcus-type) MER0274552 srtA HMPREF0542_11866
CL C60 C60.007 sortase C1 (Streptococcus sp.) MER0186272 LRU_01509
CL C60 unassigned subfamily C60A unassigned peptidases MER0717402 LRN_1466
CL C82 C82.001 L,D-transpeptidase (Enterococcus-type) MER0186494 ANHS_453
CL C82 unassigned subfamily C82A unassigned peptidases MER0737740 BN628_01415/LRC_1645/LRC_16450/LRU_01082
CO C40 non-peptidase homologue family C40 non-peptidase homologues MER0717798 LRN_1628
CO C40 non-peptidase homologue family C40 non-peptidase homologues MER0377500 LRU_00770
CO C40 unassigned family C40 unassigned peptidases MER0963327
CO C40 unassigned family C40 unassigned peptidases MER0918182
CO C40 unassigned family C40 unassigned peptidases MER0960246
CO C40 unassigned family C40 unassigned peptidases MER0274575 LRC_03890
G- G5 unassigned family G5 unassigned peptidases MER0912009 LRC_06030
G- G5 unassigned family G5 unassigned peptidases MER0912710 LRC_14870
G- G5 unassigned family G5 unassigned peptidases MER0911072 BN628_00554
MA M1 M01.002 lysyl aminopeptidase (bacteria) MER0233215
MA M1 M01.002 lysyl aminopeptidase (bacteria) MER1182343
MA M1 M01.002 lysyl aminopeptidase (bacteria) MER1182953
MA M3 M03.007 oligopeptidase F MER1187838
MA M3 M03.007 oligopeptidase F MER0199255 pepF LRC_07660
MA M3 unassigned family M3 unassigned peptidases MER0111526 pepF HMPREF0542_11804
MA M13 unassigned family M13 unassigned peptidases MER0274573 pepO HMPREF0542_11717
MA M41 M41.009 FtsH-2 peptidase MER0274540 ftsH LRC_03560
MA M48 unassigned subfamily M48B unassigned peptidases MER0274543 htpX LRU_02186
MA M78 unassigned family M78 unassigned peptidases MER0910086 HMPREF0542_11154
MD M15 M15.012 Aad peptidase MER0188691 ddpX LRC_07620
ME M16 M16.A20 ymfH g.p. (Bacillus subtilis) MER0274570 LRC_07820
ME M16 non-peptidase homologue subfamily M16C non-peptidase homologues MER0274526 LRC_07810
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0274527 LRC_07810
MG M24 M24.006 bacillus Xaa-Pro aminopeptidase MER0274574 pepQ LRC_14740
MG M24 unassigned subfamily M24A unassigned peptidases MER0274539 map LRC_06780
MG M24 unassigned subfamily M24B unassigned peptidases MER0274537 pepQ2 LRC_08270
MH M20 M20.003 peptidase T MER0274577 pepT HMPREF0542_11541
MH M20 non-peptidase homologue subfamily M20F non-peptidase homologues MER0825800 HMPREF0542_11283
MH M20 unassigned subfamily M20A unassigned peptidases MER0274576 pepV LRC_14400
MH M20 unassigned subfamily M20B unassigned peptidases MER0330936 LRU_00098
MH M20 unassigned family M20D unassigned peptidases MER0373436 LRC_14810
MH M20 unassigned subfamily M20F unassigned peptidases MER0274548 LRC_16670
MH M20 unassigned family M20 unassigned peptidases MER0274544 LRC_17240
MJ M38 M38.982 urease MER0872708 ureC
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0865392 LRN_1290
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0863822 pyrC
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0865484 pyrC
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0860467 nagA
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0872019 BN628_00490/LRU_02284
MM M50 unassigned subfamily M50B unassigned peptidases MER0894176 BN628_00694/LRC/LRC_08620/LRU_00358/rseP
MQ M29 M29.004 PepS aminopeptidase MER1257962
MQ M29 M29.004 PepS aminopeptidase MER1258013
MQ M29 M29.004 PepS aminopeptidase MER0274567 pepS2 HMPREF0542_11042
MQ M29 M29.004 PepS aminopeptidase MER0274571 pepS HMPREF0542_10928
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0274530 flhB LRC_15940
PA S1 unassigned subfamily S1C unassigned peptidases MER0274568 LRC_00450
PA S1 unassigned subfamily S1E unassigned peptidases MER0408015
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0233180 purF LRC_11300
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0457508 asnB LRC_14570
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0274553 gltA/gltB LRC_04200
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0274551 glmS LRC_17690
PB C44 unassigned family C44 unassigned peptidases MER0456544 glmS
PB C59 C59.001 penicillin V acylase precursor MER0329982 bsh HMPREF0542_10263
PB C59 C59.951 choloylglycine hydrolase MER0329991 cbh HMPREF0542_11052
PB C69 C69.001 dipeptidase A MER0274536 LRU_02318
PB C69 C69.001 dipeptidase A MER0274547 pepDA2 HMPREF0542_10154
PB C69 C69.001 dipeptidase A MER0274565 LRU_01083
PB T1 T01.007 CodW component of CodWX peptidase MER0237434
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0274546 LRC_07910
PC C26 C26.957 GMP synthase MER0274534 guaA LRC_18220
PC C26 C26.964 CTP synthetase MER0446908 pyrG ANHS_147
PC C26 C26.A32 imidazoleglycerol-phosphate synthase (Pyrococcus furiosus) MER0450451 pdxT LRC_08650
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0274541 carA HMPREF0542_10541
PC C26 unassigned family C26 unassigned peptidases MER0439135 trpG HMPREF0542_10455
PC C26 unassigned family C26 unassigned peptidases MER0274550 guaA LRC_19670
PC C26 unassigned family C26 unassigned peptidases MER0448205 ANHS_2163
PC C26 unassigned family C26 unassigned peptidases MER0444551 hisH LRC_06640
PC C26 unassigned family C26 unassigned peptidases MER0448510
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0385823 ANHS_884
PE T5 T05.002 ArgJ protein (archea) MER0238579 argJ HMPREF0542_12100
SB S8 unassigned subfamily S8A unassigned peptidases MER0986651 LRN_0476
SB S8 unassigned subfamily S8A unassigned peptidases MER0192061
SC S9 S09.B04 BSU23640 g.p. (Bacillus subtilis) MER0274545 BN628_00878 LRC_13060
SC S9 unassigned family S9 unassigned peptidases MER0274559 LRC_02170
SC S9 unassigned family S9 unassigned peptidases MER0274529 LRC_18510
SC S15 S15.001 Xaa-Pro dipeptidyl-peptidase MER0274549 pepX HMPREF0542_10169
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1024240 HMPREF0542_/LRC_13060/LRN_1150/LRU_00589
SC S15 unassigned family S15 unassigned peptidases MER1322201
SC S15 unassigned family S15 unassigned peptidases MER1322080
SC S33 S33.004 prolyl dipeptidase (Lactobacillus-type) MER0274555 pepR LRC_01730
SC S33 S33.021 iminopeptidase I (Lactobacillus delbrueckii) and similar MER0274532 LRC_00470
SC S33 unassigned family S33 unassigned peptidases MER0274554 LRC_03100
SC S33 unassigned family S33 unassigned peptidases MER0381625 pepI LRU_01527
SE S11 S11.006 D,D-carboxypeptidase PBP3 (Streptococcus-type) MER0274542 dac LRC_02080
SE S11 unassigned family S11 unassigned peptidases MER1305910
SE S11 unassigned family S11 unassigned peptidases MER1305946
SE S12 S12.950 esterase EstB MER0274538 ampC LRC_13730
SE S12 unassigned family S12 unassigned peptidases MER0421294 HMPREF0542_10406
SF S24 S24.001 repressor LexA MER0274564 lexA LRC_08380
SF S24 unassigned family S24 unassigned peptidases MER1044521 LRN_0693
SF S24 unassigned family S24 unassigned peptidases MER1044300 LRU_02134
SF S24 unassigned family S24 unassigned peptidases MER1042538 BN628_01725
SF S26 S26.006 signal peptidase SipV MER0246848 lepB HMPREF0542_10587
SF S26 non-peptidase homologue subfamily S26A non-peptidase homologues MER1045779 BN628_00513/lepB/LRU_01461
SF S26 unassigned subfamily S26A unassigned peptidases MER0246858 lepB HMPREF0542_10012
SF S26 unassigned subfamily S26A unassigned peptidases MER0274535 lepB/spsB HMPREF0542_10565
SJ S16 S16.012 SepM peptidase (Streptococcus mutans) MER0274557 lon LRC_12590
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0274566 radA LRC_03970
SK S14 S14.001 peptidase Clp (type 1) MER0274561 clpP LRC_06380
SK S41 S41.007 ctpB peptidase MER0274558 LRU_00244
ST S54 unassigned family S54 unassigned peptidases MER0274560 LRC_12370

GENOME ANALYSIS: Comparison with 64 completely sequenced genomes from genus Lactobacillus
Family Comment
M15 significant presence (1 homologues)
M29 significant presence (4 homologues)
N6 significant presence (1 homologues)
S41 significant presence (1 homologues)
T5 significant presence (1 homologues)