7osa

X-ray diffraction
3Å resolution

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Released:
Model geometry
Fit model/data

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 83-mer (preferred)
PDBe Complex ID:
PDB-CPX-247547 (preferred)
Entry contents:
77 distinct polypeptide molecules
6 distinct RNA molecules
Macromolecules (83 distinct):
60S acidic ribosomal protein P0 Chain: uL10
Molecule details ›
Chain: uL10
Length: 312 amino acids
Theoretical weight: 33.75 KDa
Source organism: Saccharomyces cerevisiae
60S ribosomal protein L2-B Chain: uL2
Molecule details ›
Chain: uL2
Length: 254 amino acids
Theoretical weight: 27.46 KDa
Source organism: Saccharomyces cerevisiae
60S ribosomal protein L3 Chain: uL3
BJ4_G0008850.mRNA.1.CDS.1 Chain: uL4
60S ribosomal protein L5 Chain: uL18
60S ribosomal protein L6 Chain: eL6
Large ribosomal subunit protein uL30A Chain: uL30
Large ribosomal subunit protein eL8A Chain: eL8
Large ribosomal subunit protein uL6A Chain: uL6
60S ribosomal protein L10 Chain: uL16
BJ4_G0027750.mRNA.1.CDS.1 Chain: uL5
60S ribosomal protein L13 Chain: eL13
Large ribosomal subunit protein eL14A Chain: eL14
Large ribosomal subunit protein eL15A Chain: eL15
60S ribosomal protein L16-A Chain: uL13
BJ4_G0005750.mRNA.1.CDS.1 Chain: uL22
BJ4_G0033900.mRNA.1.CDS.1 Chain: eL18
Large ribosomal subunit protein eL19A Chain: eL19
60S ribosomal protein L20 Chain: eL20
BJ4_G0003770.mRNA.1.CDS.1 Chain: eL21
60S ribosomal protein L22-A Chain: eL22
60S ribosomal protein L23-B Chain: uL14
60S ribosomal protein L24-A Chain: eL24
60S ribosomal protein L25 Chain: uL23
Large ribosomal subunit protein uL24A Chain: uL24
60S ribosomal protein L27 Chain: eL27
60S ribosomal protein L28 Chain: uL15
60S ribosomal protein L29 Chain: eL29
BJ4_G0020000.mRNA.1.CDS.1 Chain: eL30
BJ4_G0008090.mRNA.1.CDS.1 Chain: eL31
HN1_G0013350.mRNA.1.CDS.1 Chain: eL32
BJ4_G0025510.mRNA.1.CDS.1 Chain: eL33
60S ribosomal protein L34-A Chain: eL34
BJ4_G0044250.mRNA.1.CDS.1 Chain: uL29
Large ribosomal subunit protein eL36A Chain: eL36
Ribosomal protein L37 Chain: eL37
BJ4_G0032190.mRNA.1.CDS.1 Chain: eL38
60S ribosomal protein L39 Chain: eL39
Ubiquitin Chain: eL40
eL41 Chain: eL41
BJ4_G0001880.mRNA.1.CDS.1 Chain: eL42
Large ribosomal subunit protein eL43A Chain: eL43
40S ribosomal protein S0 Chain: uS2
40S ribosomal protein S1 Chain: eS1
40S ribosomal protein S2 Chain: uS5
BJ4_G0045400.mRNA.1.CDS.1 Chain: uS3
40S ribosomal protein S4 Chain: eS4
Rps5p Chain: uS7
40S ribosomal protein S6 Chain: eS6
40S ribosomal protein S7 Chain: eS7
40S ribosomal protein S8 Chain: eS8
BJ4_G0026100.mRNA.1.CDS.1 Chain: uS4
40S ribosomal protein S10-A Chain: eS10
40S ribosomal protein S11-B Chain: uS17
40S ribosomal protein S12 Chain: eS12
40S ribosomal protein S13 Chain: uS15
40S ribosomal protein S14-A Chain: uS11
40S ribosomal protein S15 Chain: uS19
BJ4_G0008010.mRNA.1.CDS.1 Chain: uS9
BJ4_G0020710.mRNA.1.CDS.1 Chain: eS17
40S ribosomal protein S18-B Chain: uS13
40S ribosomal protein S19-A Chain: eS19
40S ribosomal protein S20 Chain: uS10
40S ribosomal protein S21 Chain: eS21
40S ribosomal protein S22-A Chain: uS8
40S ribosomal protein S23 Chain: uS12
40S ribosomal protein S24 Chain: eS24
40S ribosomal protein S25 Chain: eS25
40S ribosomal protein S26 Chain: eS26
Small ribosomal subunit protein eS27A Chain: eS27
eS28 Chain: eS28
HLJ1_G0030400.mRNA.1.CDS.1 Chain: uS14
40S ribosomal protein S30 Chain: eS30
BJ4_G0022010.mRNA.1.CDS.1 Chain: RACK
Ubiquitin-40S ribosomal protein S31 Chain: eS31
Elongation factor 2 Chain: eEF2
60S ribosomal protein L12-B Chain: uL11
25S ribosomal RNA Chain: 25S
5S Chain: AB
5.8S ribosomal RNA Chain: 58S
18S Ribosomal RNA Chain: 18S
Psite tRNA-Phe Chain: PSIT
Messenger RNA Chain: mRNA

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X6A
Spacegroup: P212121
Unit cell:
a: 227.11Å b: 309.35Å c: 527.96Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.196 0.196 0.25