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Eubacterium limosum

Taxonomy
Taxonomy database identifier: 1736
Superkingdom Bacteria
Phylum Firmicutes
Class Clostridia
Order Clostridiales
Species limosum
Family Eubacteriaceae
Genus Eubacterium
Peptidase View peptidase sequences from Eubacterium limosum
Count of known and putative peptidases: 50, non-peptidase homologues 10
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0401259 lspA ELI_4055
AD A24 A24.019 ComC peptidase MER0233285 ELI_4142
AD A24 unassigned subfamily A24A unassigned peptidases MER1158240
CA C1 C01.160 morrenain b I (Morrenia brachystephana) MER0428437 ELI_1241
CA C1 unassigned subfamily C1A unassigned peptidases MER0428435 ELI_1241
CA C1 unassigned subfamily C1A unassigned peptidases MER0428438 ELI_4244
CA C39 C39.001 bacteriocin-processing peptidase MER0302293 ELI_3562
CL C60 C60.007 sortase C1 (Streptococcus sp.) MER0329762 ELI_1826
CL C60 C60.007 sortase C1 (Streptococcus sp.) MER0329688 ELI_4237
CL C60 unassigned subfamily C60B unassigned peptidases MER0299973 ELI_1680
CL C60 unassigned subfamily C60B unassigned peptidases MER0300082 ELI_1715
CL C82 unassigned subfamily C82A unassigned peptidases MER0279354 ELI_3916
G- G5 unassigned family G5 unassigned peptidases MER0935592 ELI_3276
G- G5 unassigned family G5 unassigned peptidases MER0935238 ELI_0388
G- G5 unassigned family G5 unassigned peptidases MER0936835 ELI_1239/ELI_1240
MA M30 unassigned family M30 unassigned peptidases MER1259471
MA M30 unassigned family M30 unassigned peptidases MER1259526
MA M30 unassigned family M30 unassigned peptidases MER1259493
MA M30 unassigned family M30 unassigned peptidases MER0428436 ELI_1241
MA M41 M41.021 FtsH peptidase (Thermotoga-type) MER0362409 ftsH ELI_3781
MA M41 unassigned family M41 unassigned peptidases MER0363556 ftsH ELI_2600
MA M56 unassigned family M56 unassigned peptidases MER0934452 ELI_4241
MA M78 non-peptidase homologue family M78 non-peptidase homologues MER0910139 ELI_2777
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER1237190
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER1237320
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER1237274
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER1237213
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER0233624 ELI_4246
MD M15 unassigned subfamily M15A unassigned peptidases MER0233477 ELI_3176
MD M15 unassigned subfamily M15B unassigned peptidases MER0275634 ELI_3595
MD M15 unassigned subfamily M15B unassigned peptidases MER0332257
MD M15 unassigned subfamily M15D unassigned peptidases MER0312444 ELI_0380
ME M16 unassigned subfamily M16C unassigned peptidases MER0316453 ELI_3288
MG M24 unassigned subfamily M24A unassigned peptidases MER0394858 map ELI_2355
MG M24 unassigned subfamily M24A unassigned peptidases MER0394725 map ELI_4013
MG M24 unassigned subfamily M24B unassigned peptidases MER0319342 ELI_3063
MH M18 unassigned family M18 unassigned peptidases MER0236875 ELI_2644
MH M18 unassigned family M18 unassigned peptidases MER0279151 ELI_3442
MH M20 M20.003 peptidase T MER0303415 pepT ELI_3615
MH M20 unassigned subfamily M20A unassigned peptidases MER0852475 ELI_1363
MH M20 unassigned subfamily M20A unassigned peptidases MER0369754 ELI_1759
MH M20 unassigned subfamily M20A unassigned peptidases MER0370322 ELI_2443
MH M20 unassigned subfamily M20C unassigned peptidases MER0303814 ELI_3170
MH M20 unassigned family M20D unassigned peptidases MER0373811 ELI_2594
MH M20 unassigned family M20D unassigned peptidases MER0372985 ELI_3249
MH M20 unassigned family M20 unassigned peptidases MER0369853 ELI_3918 ELI_3918
MH M20 unassigned family M20 unassigned peptidases MER0849420 ELI_0307
MH M42 unassigned family M42 unassigned peptidases MER0364483 ELI_1878
MJ M38 M38.976 dihydropyrimidinase related protein-3 MER0869004 ELI_2449
MJ M38 unassigned family M38 unassigned peptidases MER0868532 ELI_4534
MM M50 unassigned subfamily M50B unassigned peptidases MER0892772 ELI_1571
MM M50 unassigned subfamily M50B unassigned peptidases MER0894491 ELI_2516
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0389608 ELI_1354
MO M23 unassigned subfamily M23B unassigned peptidases MER0388501 ELI_0740
MO M23 unassigned subfamily M23B unassigned peptidases MER0388029 ELI_1085
MO M23 unassigned subfamily M23B unassigned peptidases MER0388122 ELI_4610
MO M23 unassigned subfamily M23B unassigned peptidases MER0389453 ELI_1931
MO M23 unassigned subfamily M23B unassigned peptidases MER0389801 ELI_2287
MO M23 unassigned subfamily M23B unassigned peptidases MER0387524 ELI_3059
MO M23 unassigned subfamily M23B unassigned peptidases MER0388879 ELI_3197
MQ M29 unassigned family M29 unassigned peptidases MER0294154 ELI_2896
PA S1 unassigned subfamily S1C unassigned peptidases MER0407823 ELI_0150 ELI_0150
PA S1 unassigned subfamily S1C unassigned peptidases MER0406552 ELI_2078 ELI_2078
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0454483 ELI_1201
PB C44 C44.A09 PF0204 protein (Pyrococcus furiosus ) MER0458242 ELI_4200
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0455631 glmS ELI_0478
PB C44 unassigned family C44 unassigned peptidases MER0458241 ELI_3501
PB C59 C59.951 choloylglycine hydrolase MER0329979 ELI_1322
PB C59 C59.951 choloylglycine hydrolase MER0329976 ELI_1856
PB C59 unassigned family C59 unassigned peptidases MER0914109 ELI_0510
PB C69 unassigned family C69 unassigned peptidases MER0736085 ELI_2302
PB T1 T01.007 CodW component of CodWX peptidase MER0231302 hslV ELI_2500
PC C26 C26.959 TRP3 protein MER0435842 ELI_1092
PC C26 C26.959 TRP3 protein MER0435843 ELI_1663
PC C26 C26.964 CTP synthetase MER0448760 pyrG ELI_4101
PC C26 C26.A07 At1g63660 (Arabidopsis thaliana) MER0440782 guaA ELI_1127
PC C26 unassigned family C26 unassigned peptidases MER0445176 ELI_0250
PC C26 unassigned family C26 unassigned peptidases MER0445118 hisH ELI_0358
PC C26 unassigned family C26 unassigned peptidases MER0450778 ELI_3359
PC C26 unassigned family C26 unassigned peptidases MER0441154 carA ELI_3886
PC C56 C56.001 PfpI peptidase MER0236701 ELI_4151
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0893309 ELI_1039
PC S51 unassigned family S51 unassigned peptidases MER1357458
PE T5 T05.002 ArgJ protein (archea) MER0307542 argJ ELI_2180
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER0984858 ELI_0081
SB S8 non-peptidase homologue subfamily S8A non-peptidase homologues MER0968127 ELI_1238
SB S8 unassigned subfamily S8A unassigned peptidases MER0970351 ELI_3172
SB S8 unassigned subfamily S8A unassigned peptidases MER0976944 ELI_0389
SB S8 unassigned subfamily S8A unassigned peptidases MER0971486 ELI_1242
SB S8 unassigned subfamily S8B unassigned peptidases MER1291344
SB S8 unassigned subfamily S8B unassigned peptidases MER1290573
SB S8 unassigned subfamily S8B unassigned peptidases MER1290449
SC S9 unassigned family S9 unassigned peptidases MER0381537 ELI_3697
SC S33 unassigned family S33 unassigned peptidases MER0381310 ELI_4312
SE S11 S11.004 K15-type DD-transpeptidase MER0352466 ELI_1497
SE S11 unassigned family S11 unassigned peptidases MER0352778 ELI_3287
SE S12 unassigned family S12 unassigned peptidases MER0355702 ELI_0667
SF S24 non-peptidase homologue family S24 non-peptidase homologues MER1028953 ELI_2140
SF S26 unassigned subfamily S26A unassigned peptidases MER0246569 ELI_2875
SF S26 unassigned subfamily S26B unassigned peptidases MER1051612 ELI_1958
SF S26 unassigned subfamily S26B unassigned peptidases MER1048507 ELI_3448
SF S26 unassigned subfamily S26B unassigned peptidases MER1052390 ELI_0624
SF S26 unassigned subfamily S26B unassigned peptidases MER1052146 ELI_4338
SH S78 unassigned family S78 unassigned peptidases MER1087696 ELI_3114
SJ S16 S16.001 Lon-A peptidase MER0360428 lon ELI_3524
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER1034990 ELI_3658
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER1035916 ELI_2504
SJ S16 unassigned family S16 unassigned peptidases MER1327971
SJ S16 unassigned family S16 unassigned peptidases MER0360792 lon ELI_2747
SK S14 S14.001 peptidase Clp (type 1) MER0299373 clpP ELI_3526
SK S41 S41.004 C-terminal processing peptidase-3 MER0337136 ELI_3058
SS S66 unassigned family S66 unassigned peptidases MER1087276 ELI_4479
U- U32 unassigned family U32 unassigned peptidases MER0233848 ELI_3286
U- U32 unassigned family U32 unassigned peptidases MER0233849 ELI_3286
U- U32 unassigned family U32 unassigned peptidases MER0403583 ELI_3732
U- U56 unassigned family U56 unassigned peptidases MER0332323 ELI_0384
U- U56 unassigned family U56 unassigned peptidases MER0329216 ELI_2651

GENOME ANALYSIS: Comparison with 24 completely sequenced genomes from genus Eubacterium
Family Comment
C26 lineage specific expansion (8 homologues)
C69 significant presence (1 homologues)
M15 lineage specific expansion (9 homologues)
M20 lineage specific expansion (9 homologues)
M23 lineage specific expansion (8 homologues)
M30 significant presence (4 homologues)
S8 lineage specific expansion (8 homologues)
S16 lineage specific expansion (5 homologues)
S78 significant presence (1 homologues)
U56 significant presence (2 homologues)

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